CmoCh13G009560 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACTACGGAAATATGAGAAGCATTCTGGTGGTGCCATTATAAGCCCACCAAGTTCTTCCCCCTCCGAAGGGAAACGGGAAGGAAAGGAGGAGATTCTCTTCTCGGAGGCTTCAAACCCAGAAACCATTTCCTTTCGATCTTCGATTTCAATTTGGAAAAGAAATCCAAAGAATCGAAGAACAGCCTCATCCATTAATCTTTCTTATTCTGAGGGATGGGTGTGAGCAGCCGTTGTTCCCATACTTCACACATCACCGAAATCATAATCACCAGCTTCTTCCGCCATAAGTCTTAGATTACCCCCCAACAACACAGACCCACTGGCTAATCTTCTCCGTTTTGTTGATGGCTGTTTGAAACAGGGAATAGTTTCTTTGTATTTAGGGCTATGGCGGGTCGGAGGGTATACGGCGGCGGCGACGGTGGTAGTATAAGCGGTGTTTCTTCCAATCATAGTGTTTTGCTTCATAATCGTGGAGGGTCTTTTGCTTCTGAGCCGCTTAGTGCTCTTTTCCTTTCTGGGTCATCTTCTTCTACTTCCCCCTCTCTGCTTGGTACACCCTTTTTCTTGATCTTTTCAGTTCTTGCCTCTGTATGCTTGATTTCTTTGATGTTTCTCTGTGGAATTGATGATTTGGGTCACCCTTTGGGTTTATGTGCTGAATTCTCAATGCTTTTGGCTGTTTAAATTGGATCATTAATCGCTGATTTTGAGAAAACCGATGTAATTTCCTTCTGGTTGTTAGCTGAATCTGGTGCAGTTCTAGAGTTCAATTTGTGTAGAAGAATTGTATCAGATTGATTGATATTATCTGACATATATCACTTGGGGAGTAAAACTTGTCTAGTTGATGTTCATGACAGATTGTTCTGGTATAGGTTCAAGATCCATGATGAGTTTCGAAGATATTCGTGGAGGAAACGGATCGAATAGATCGTTCTTTTGCCCGTTCGATAATGAAGATAATGGGGATGAAGACTTGGATGATTACTTCCATCACCCTGAAAAAAAGAGGCGTTTATCAGCTGATCAAGTCCGGTTCCTCGAGAAAAGTTTCGAGACCGAGAACAAGCTCGAACCGGAGAGGAAAGTTCAGCTAGCCAAGGACCTCGGGCTGCAGCCTCGTCAGGTTGCTATATGGTTTCAAAATCGCCGAGCACGGTGGAAAACTAAACAGCTGGAGAAGGACTATGAAGCTCTTCAATCCAGCTATGGAAACCTTAAGGCTGACTATGAAAACCTACTGAAGGAGAAGGATTCATTGAAGGCTGAGGTAAAATTGTTGTTGACATTCATGGATATTCCATTATTGGTGATTAAGCTGTGTTGGGTTTGCATTATTACTAAGAAACAATACATGGATATTACAGATTGTTGTCCTGACAGACAAACTGATACTCAAAGACAAAGAAAGGAGCAACTCTGTGGTGTCTGAAGATGACAAATTTGGTGAAGAACCACCACAAAATTTGGTTGATGAAGCCTCCAAATCTTCAAAGCTGGGTTGTAAGCAGGAGGATATGAGTTCAGTCAAAAGTGATATATTTGATTCAGATAGCCCACACTACACTGATGGGGTTCACTCTTCACTCCTAGACCCCGGAGATTCGTCCTACATTTTCGATCCCGATCAGTCCGACTTATCGCAAGACGAAGAAGATAACTTGGGAAAGAATCTTTTGCCTCCTTGCATCTTCCCAAAGCTCGAAGACGTCGATTACTCTGACCCGCCCACAAGTTCTTGTAATTTTGTATTCCCCATTGAAGACAATGCCCTTTGGTCCTGGTCTTAGAGAGTCTTTTTCTATGTTGTGCTTGTTTTCTTTTCTAGTAATAAATCCAAGCAATGGTAGCCCACACCCACGTGTCGAGCCTAGCCGAGCCAGGTTCGACAACTTCTTCGATCCATCCTGTAATCTTCTCGGGTTTTGGTTAAGGGTTGTTTTTAGTGTCGAATAATGGTTGTTTTCTTTGAATGTGATTAAATAATATGTTGTCAATTATGTTTCCTCCTGATTTTGATAGTTTTGAAAAGTTTAAGGTTGTTTTGATGACTGTAATTTTGTGCCCCATTTCAGGGCTTTGGCTTGCTCTTTCTTGACCTTAATTCTAGGCTTTTTGGTTACAAATCAGAGCAAGCAAATGGGTAAGAGGCAAAATGATGAGAAGAAAAGGCTAAAACTTTACTGAAATGGTGTTTTATGAAGCAATGTAATGAAGGAAAAGGGGGTTGACTTTTATGATATGCCATTAATGGGTAGCTTGCAGAATCATCATGTCACTAATAAAGTTTCTTGTTCTGTGGGG AACTACGGAAATATGAGAAGCATTCTGGTGGTGCCATTATAAGCCCACCAAGTTCTTCCCCCTCCGAAGGGAAACGGGAAGGAAAGGAGGAGATTCTCTTCTCGGAGGCTTCAAACCCAGAAACCATTTCCTTTCGATCTTCGATTTCAATTTGGAAAAGAAATCCAAAGAATCGAAGAACAGCCTCATCCATTAATCTTTCTTATTCTGAGGGATGGGTGTGAGCAGCCGTTGTTCCCATACTTCACACATCACCGAAATCATAATCACCAGCTTCTTCCGCCATAAGTCTTAGATTACCCCCCAACAACACAGACCCACTGGCTAATCTTCTCCGTTTTGTTGATGGCTGTTTGAAACAGGGAATAGTTTCTTTGTATTTAGGGCTATGGCGGGTCGGAGGGTATACGGCGGCGGCGACGGTGGTAGTATAAGCGGTGTTTCTTCCAATCATAGTGTTTTGCTTCATAATCGTGGAGGGTCTTTTGCTTCTGAGCCGCTTAGTGCTCTTTTCCTTTCTGGGTCATCTTCTTCTACTTCCCCCTCTCTGCTTGATTGTTCTGGTATAGGTTCAAGATCCATGATGAGTTTCGAAGATATTCGTGGAGGAAACGGATCGAATAGATCGTTCTTTTGCCCGTTCGATAATGAAGATAATGGGGATGAAGACTTGGATGATTACTTCCATCACCCTGAAAAAAAGAGGCGTTTATCAGCTGATCAAGTCCGGTTCCTCGAGAAAAGTTTCGAGACCGAGAACAAGCTCGAACCGGAGAGGAAAGTTCAGCTAGCCAAGGACCTCGGGCTGCAGCCTCGTCAGGTTGCTATATGGTTTCAAAATCGCCGAGCACGGTGGAAAACTAAACAGCTGGAGAAGGACTATGAAGCTCTTCAATCCAGCTATGGAAACCTTAAGGCTGACTATGAAAACCTACTGAAGGAGAAGGATTCATTGAAGGCTGAGGTAAAATTGTTGTTGACATTCATGGATATTCCATTATTGGTGATTAAGCTGTGTTGGATTGTTGTCCTGACAGACAAACTGATACTCAAAGACAAAGAAAGGAGCAACTCTGTGGTGTCTGAAGATGACAAATTTGGTGAAGAACCACCACAAAATTTGGTTGATGAAGCCTCCAAATCTTCAAAGCTGGGTTGTAAGCAGGAGGATATGAGTTCAGTCAAAAGTGATATATTTGATTCAGATAGCCCACACTACACTGATGGGGTTCACTCTTCACTCCTAGACCCCGGAGATTCGTCCTACATTTTCGATCCCGATCAGTCCGACTTATCGCAAGACGAAGAAGATAACTTGGGAAAGAATCTTTTGCCTCCTTGCATCTTCCCAAAGCTCGAAGACGTCGATTACTCTGACCCGCCCACAAGTTCTTGTAATTTTGTATTCCCCATTGAAGACAATGCCCTTTGGTCCTGGTCTTAGAGAGTCTTTTTCTATGTTGTGCTTGTTTTCTTTTCTAGTAATAAATCCAAGCAATGGTAGCCCACACCCACGTGTCGAGCCTAGCCGAGCCAGGTTCGACAACTTCTTCGATCCATCCTGTAATCTTCTCGGGTTTTGGTTAAGGGTTGTTTTTAGTGTCGAATAATGGTTGTTTTCTTTGAATGTGATTAAATAATATGTTGTCAATTATGTTTCCTCCTGATTTTGATAGTTTTGAAAAGTTTAAGGTTGTTTTGATGACTGTAATTTTGTGCCCCATTTCAGGGCTTTGGCTTGCTCTTTCTTGACCTTAATTCTAGGCTTTTTGGTTACAAATCAGAGCAAGCAAATGGGTAAGAGGCAAAATGATGAGAAGAAAAGGCTAAAACTTTACTGAAATGGTGTTTTATGAAGCAATGTAATGAAGGAAAAGGGGGTTGACTTTTATGATATGCCATTAATGGGTAGCTTGCAGAATCATCATGTCACTAATAAAGTTTCTTGTTCTGTGGGG ATGGCGGGTCGGAGGGTATACGGCGGCGGCGACGGTGGTAGTATAAGCGGTGTTTCTTCCAATCATAGTGTTTTGCTTCATAATCGTGGAGGGTCTTTTGCTTCTGAGCCGCTTAGTGCTCTTTTCCTTTCTGGGTCATCTTCTTCTACTTCCCCCTCTCTGCTTGATTGTTCTGGTATAGGTTCAAGATCCATGATGAGTTTCGAAGATATTCGTGGAGGAAACGGATCGAATAGATCGTTCTTTTGCCCGTTCGATAATGAAGATAATGGGGATGAAGACTTGGATGATTACTTCCATCACCCTGAAAAAAAGAGGCGTTTATCAGCTGATCAAGTCCGGTTCCTCGAGAAAAGTTTCGAGACCGAGAACAAGCTCGAACCGGAGAGGAAAGTTCAGCTAGCCAAGGACCTCGGGCTGCAGCCTCGTCAGGTTGCTATATGGTTTCAAAATCGCCGAGCACGGTGGAAAACTAAACAGCTGGAGAAGGACTATGAAGCTCTTCAATCCAGCTATGGAAACCTTAAGGCTGACTATGAAAACCTACTGAAGGAGAAGGATTCATTGAAGGCTGAGGTAAAATTGTTGTTGACATTCATGGATATTCCATTATTGGTGATTAAGCTGTGTTGGATTGTTGTCCTGACAGACAAACTGATACTCAAAGACAAAGAAAGGAGCAACTCTGTGGTGTCTGAAGATGACAAATTTGGTGAAGAACCACCACAAAATTTGGTTGATGAAGCCTCCAAATCTTCAAAGCTGGGTTGTAAGCAGGAGGATATGAGTTCAGTCAAAAGTGATATATTTGATTCAGATAGCCCACACTACACTGATGGGGTTCACTCTTCACTCCTAGACCCCGGAGATTCGTCCTACATTTTCGATCCCGATCAGTCCGACTTATCGCAAGACGAAGAAGATAACTTGGGAAAGAATCTTTTGCCTCCTTGCATCTTCCCAAAGCTCGAAGACGTCGATTACTCTGACCCGCCCACAAGTTCTTGTAATTTTGTATTCCCCATTGAAGACAATGCCCTTTGGTCCTGGTCTTAG MAGRRVYGGGDGGSISGVSSNHSVLLHNRGGSFASEPLSALFLSGSSSSTSPSLLDCSGIGSRSMMSFEDIRGGNGSNRSFFCPFDNEDNGDEDLDDYFHHPEKKRRLSADQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGNLKADYENLLKEKDSLKAEVKLLLTFMDIPLLVIKLCWIVVLTDKLILKDKERSNSVVSEDDKFGEEPPQNLVDEASKSSKLGCKQEDMSSVKSDIFDSDSPHYTDGVHSSLLDPGDSSYIFDPDQSDLSQDEEDNLGKNLLPPCIFPKLEDVDYSDPPTSSCNFVFPIEDNALWSWS Homology
BLAST of CmoCh13G009560 vs. ExPASy Swiss-Prot
Match: A2YWC0 (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica OX=39946 GN=HOX20 PE=2 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 5.8e-32 Identity = 84/166 (50.60%), Postives = 107/166 (64.46%), Query Frame = 0
BLAST of CmoCh13G009560 vs. ExPASy Swiss-Prot
Match: Q6Z248 (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX20 PE=2 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 5.8e-32 Identity = 84/166 (50.60%), Postives = 107/166 (64.46%), Query Frame = 0
BLAST of CmoCh13G009560 vs. ExPASy Swiss-Prot
Match: Q02283 (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana OX=3702 GN=HAT5 PE=1 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 2.9e-31 Identity = 105/247 (42.51%), Postives = 139/247 (56.28%), Query Frame = 0
BLAST of CmoCh13G009560 vs. ExPASy Swiss-Prot
Match: Q9XH37 (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica OX=39946 GN=HOX4 PE=1 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 7.1e-30 Identity = 74/136 (54.41%), Postives = 96/136 (70.59%), Query Frame = 0
BLAST of CmoCh13G009560 vs. ExPASy Swiss-Prot
Match: Q6K498 (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX4 PE=1 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 7.1e-30 Identity = 74/136 (54.41%), Postives = 96/136 (70.59%), Query Frame = 0
BLAST of CmoCh13G009560 vs. ExPASy TrEMBL
Match: A0A6J1E881 (homeobox-leucine zipper protein HAT5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431546 PE=4 SV=1) HSP 1 Score: 639.0 bits (1647), Expect = 1.1e-179 Identity = 332/351 (94.59%), Postives = 332/351 (94.59%), Query Frame = 0
BLAST of CmoCh13G009560 vs. ExPASy TrEMBL
Match: A0A6J1KH51 (homeobox-leucine zipper protein HAT5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495210 PE=4 SV=1) HSP 1 Score: 625.5 bits (1612), Expect = 1.3e-175 Identity = 327/353 (92.63%), Postives = 330/353 (93.48%), Query Frame = 0
BLAST of CmoCh13G009560 vs. ExPASy TrEMBL
Match: A0A6J1E7N0 (homeobox-leucine zipper protein HAT5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431546 PE=4 SV=1) HSP 1 Score: 622.1 bits (1603), Expect = 1.4e-174 Identity = 327/351 (93.16%), Postives = 327/351 (93.16%), Query Frame = 0
BLAST of CmoCh13G009560 vs. ExPASy TrEMBL
Match: A0A6J1KF00 (homeobox-leucine zipper protein HAT5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495210 PE=4 SV=1) HSP 1 Score: 608.6 bits (1568), Expect = 1.6e-170 Identity = 322/353 (91.22%), Postives = 325/353 (92.07%), Query Frame = 0
BLAST of CmoCh13G009560 vs. ExPASy TrEMBL
Match: A0A1S3AU52 (homeobox-leucine zipper protein HAT5-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482975 PE=4 SV=1) HSP 1 Score: 574.3 bits (1479), Expect = 3.4e-160 Identity = 302/357 (84.59%), Postives = 317/357 (88.80%), Query Frame = 0
BLAST of CmoCh13G009560 vs. NCBI nr
Match: XP_022923991.1 (homeobox-leucine zipper protein HAT5-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 639.0 bits (1647), Expect = 2.3e-179 Identity = 332/351 (94.59%), Postives = 332/351 (94.59%), Query Frame = 0
BLAST of CmoCh13G009560 vs. NCBI nr
Match: KAG7019855.1 (Homeobox-leucine zipper protein HAT5 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 630.2 bits (1624), Expect = 1.1e-176 Identity = 330/352 (93.75%), Postives = 331/352 (94.03%), Query Frame = 0
BLAST of CmoCh13G009560 vs. NCBI nr
Match: XP_023519657.1 (homeobox-leucine zipper protein HAT5-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 627.5 bits (1617), Expect = 7.0e-176 Identity = 329/352 (93.47%), Postives = 330/352 (93.75%), Query Frame = 0
BLAST of CmoCh13G009560 vs. NCBI nr
Match: XP_023000911.1 (homeobox-leucine zipper protein HAT5-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 625.5 bits (1612), Expect = 2.7e-175 Identity = 327/353 (92.63%), Postives = 330/353 (93.48%), Query Frame = 0
BLAST of CmoCh13G009560 vs. NCBI nr
Match: XP_022923992.1 (homeobox-leucine zipper protein HAT5-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 622.1 bits (1603), Expect = 3.0e-174 Identity = 327/351 (93.16%), Postives = 327/351 (93.16%), Query Frame = 0
BLAST of CmoCh13G009560 vs. TAIR 10
Match: AT3G01470.1 (homeobox 1 ) HSP 1 Score: 137.5 bits (345), Expect = 2.1e-32 Identity = 105/247 (42.51%), Postives = 139/247 (56.28%), Query Frame = 0
BLAST of CmoCh13G009560 vs. TAIR 10
Match: AT2G22430.1 (homeobox protein 6 ) HSP 1 Score: 126.7 bits (317), Expect = 3.6e-29 Identity = 62/96 (64.58%), Postives = 81/96 (84.38%), Query Frame = 0
BLAST of CmoCh13G009560 vs. TAIR 10
Match: AT4G40060.1 (homeobox protein 16 ) HSP 1 Score: 126.7 bits (317), Expect = 3.6e-29 Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = 0
BLAST of CmoCh13G009560 vs. TAIR 10
Match: AT1G69780.1 (Homeobox-leucine zipper protein family ) HSP 1 Score: 124.0 bits (310), Expect = 2.4e-28 Identity = 66/108 (61.11%), Postives = 81/108 (75.00%), Query Frame = 0
BLAST of CmoCh13G009560 vs. TAIR 10
Match: AT5G65310.1 (homeobox protein 5 ) HSP 1 Score: 122.9 bits (307), Expect = 5.3e-28 Identity = 68/120 (56.67%), Postives = 90/120 (75.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|