CmoCh13G008760 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G008760
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein FAR1-RELATED SEQUENCE
Location	Cmo_Chr13: 7957368 .. 7958038 (-)
RNA-Seq Expression	CmoCh13G008760
Synteny	CmoCh13G008760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGGTAAGACAAGATTTGATTGTGTTTCAGACAAGACAACTGCTTTAGTCTGTTAGTGTCCAAGGATCCTTGTTTGTGTTGTACTAGGAAAAAGACAGTTCCATCGCTTCTAGCCGCGGGTTGTTTCGAGCATCGACATAGCATACGAGGGGCAGGGAATCGATTCATACGACCTCTGCATGGAGTCGTAAGAGATGTTTGAATATCATCTATTCCACTTTTACTGACATTATTAGTTGAACAAAACAAACAAAACGTCGACTTGTAGGAGCAATCGAACTTCAAACCCGACGCAATTTCAGGTCGCTTAGACCTTCAAGTTGGTCAACAGGATGTGGTACTAAAATTGTGTTTCATCTCCTTGTCTGTCTTTTATGTTCTCCATTGCTACGGTTTAAAGTTTACGTGTTCACTTCTCTTGCAGGACCCATCTAGCGCGGAATCCACAAAAGTTCATAGCATTTCATCCAATCAATGCAATTGAGAATCTTTTTCCATAGCCGATCATCTACAGCAGTAACCATCTTTAGTGTACATGAATCCGAACCCGAACATGAAATCTTAGTATCAACCGTTCGAGTATCATACTCCTTCCATTTACTACTTGTCATGGCAAAAGTAGAAACTACCTAAGAAGTAAGAATATAGATATAATACAACACGAAC

mRNA sequence

ATGGAATGGAAAAAGACAGTTCCATCGCTTCTAGCCGCGGGTTGTTTCGAGCATCGACATAGCATACGAGGGGCAGGGAATCGATTCATACGACCTCTGCATGGAGTCGAGCAATCGAACTTCAAACCCGACGCAATTTCAGGTCGCTTAGACCTTCAAGTTGGTCAACAGGATGTGGACCCATCTAGCGCGGAATCCACAAAAGTTCATAGCATTTCATCCAATCAATGCAATTGAGAATCTTTTTCCATAGCCGATCATCTACAGCAGTAACCATCTTTAGTGTACATGAATCCGAACCCGAACATGAAATCTTAGTATCAACCGTTCGAGTATCATACTCCTTCCATTTACTACTTGTCATGGCAAAAGTAGAAACTACCTAAGAAGTAAGAATATAGATATAATACAACACGAAC

Coding sequence (CDS)

ATGGAATGGAAAAAGACAGTTCCATCGCTTCTAGCCGCGGGTTGTTTCGAGCATCGACATAGCATACGAGGGGCAGGGAATCGATTCATACGACCTCTGCATGGAGTCGAGCAATCGAACTTCAAACCCGACGCAATTTCAGGTCGCTTAGACCTTCAAGTTGGTCAACAGGATGTGGACCCATCTAGCGCGGAATCCACAAAAGTTCATAGCATTTCATCCAATCAATGCAATTGA

Protein sequence

MEWKKTVPSLLAAGCFEHRHSIRGAGNRFIRPLHGVEQSNFKPDAISGRLDLQVGQQDVDPSSAESTKVHSISSNQCN

Homology

[Close]

BLAST of CmoCh13G008760 vs. ExPASy TrEMBL
Match: A0A6J1C736 (Protein FAR1-RELATED SEQUENCE OS=Momordica charantia OX=3673 GN=LOC111009004 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.0e-05
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 14  GCFEHRHSIRGAGNRFIRPLHGVEQSNFKPD-AISGRLDLQVGQQDVDPSSAESTKVHSI 73
           GCFE++H  RG          GV + NF+PD  + GRL++QVG  D+DPSSA S +VH  
Sbjct: 805 GCFENQHITRGL---------GVGKLNFRPDVVVPGRLNIQVGPHDMDPSSAGSIEVHGA 859

Query: 74  SSNQ 77
           SS Q
Sbjct: 865 SSKQ 859

[Close]

BLAST of CmoCh13G008760 vs. NCBI nr
Match: KAG6584190.1 (Protein FAR-RED IMPAIRED RESPONSE 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.9 bits (398), Expect = 3.5e-35
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1   MEWKKTVPSLLAAGCFEHRHSIRGAGNRFIRPLHGVEQSNFKPDAISGRLDLQVGQQDVD 60
           MEWKKTVPSLL AGCFEHRHSIRGAGNRFIRPLHGVEQSNFKPDAISGR DLQVGQQDVD
Sbjct: 784 MEWKKTVPSLLVAGCFEHRHSIRGAGNRFIRPLHGVEQSNFKPDAISGRFDLQVGQQDVD 843

Query: 61  PSSAESTKVHSISSNQCN 79
           PSSAE TKVHSISSNQCN
Sbjct: 844 PSSAEFTKVHSISSNQCN 861

[Close]

BLAST of CmoCh13G008760 vs. NCBI nr
Match: KAG7019782.1 (Protein FAR-RED IMPAIRED RESPONSE 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.3 bits (199), Expect = 4.2e-12
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1   MEWKKTVPSLLAAGCFEHRHSIRGAGNRFIRPLHGV 37
           MEWKKTVPSLL AGCFEHRHSIRGAGNRFIRPLHGV
Sbjct: 813 MEWKKTVPSLLVAGCFEHRHSIRGAGNRFIRPLHGV 848

[Close]

BLAST of CmoCh13G008760 vs. NCBI nr
Match: XP_022137598.1 (protein FAR-RED IMPAIRED RESPONSE 1 [Momordica charantia] >XP_022137600.1 protein FAR-RED IMPAIRED RESPONSE 1 [Momordica charantia] >XP_022137601.1 protein FAR-RED IMPAIRED RESPONSE 1 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 14  GCFEHRHSIRGAGNRFIRPLHGVEQSNFKPD-AISGRLDLQVGQQDVDPSSAESTKVHSI 73
           GCFE++H  RG          GV + NF+PD  + GRL++QVG  D+DPSSA S +VH  
Sbjct: 805 GCFENQHITRGL---------GVGKLNFRPDVVVPGRLNIQVGPHDMDPSSAGSIEVHGA 859

Query: 74  SSNQ 77
           SS Q
Sbjct: 865 SSKQ 859

The following BLAST results are available for this feature:

BLAST of CmoCh13G008760 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G008760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C736	7.0e-05	48.44	Protein FAR1-RELATED SEQUENCE OS=Momordica charantia OX=3673 GN=LOC111009004 PE=...	[more]

BLAST of CmoCh13G008760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584190.1	3.5e-35	96.15	Protein FAR-RED IMPAIRED RESPONSE 1, partial [Cucurbita argyrosperma subsp. soro...	[more]
KAG7019782.1	4.2e-12	97.22	Protein FAR-RED IMPAIRED RESPONSE 1, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022137598.1	1.4e-04	48.44	protein FAR-RED IMPAIRED RESPONSE 1 [Momordica charantia] >XP_022137600.1 protei...	[more]

BLAST of CmoCh13G008760 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G008760.1	CmoCh13G008760.1	mRNA