CmoCh13G008740 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G008740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L7/L12
Location	Cmo_Chr13: 7951170 .. 7951811 (+)
RNA-Seq Expression	CmoCh13G008740
Synteny	CmoCh13G008740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCTTAGTTTTAAGAATAAGTCATCTCCTACCCAATGTGTTGGCAAACACCTTTCGCTCTCCTGCACTTGCCCTCAATCCTCTCAATGTAAATGGATTACATAGAGATTTTTCTCAACCTGCTTGGATAGAGGAGGAGGAGGAGGTGGAAATTGACCAGAGAAGGCTTCCAGCTGACTACGATCCAGCTAATTTTGATCCAACACAGCATCGTAGTCCTCCAACCGATCGCGTTTTTAGGCTTGTAGATGAAATATCTGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAGATTAGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAGGCAGGAGCTGCCGGATTGGCTGGAATGGCAACAAAGGCCTCATCAGCCACTGCCAAGGAGGAGAAGAAGACAGAAAAGACTGTTTTTGAGTTGAAACTAGAGTCTTATGAAGCGGCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGCCTTAAAGAAGCGAAGGATCTAGTGGAGAAAACCCCGTCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAACTAATTGAAAAAATGAAGGCTCTTGGTGCAAAGGTGATCTTGGAATGA

mRNA sequence

ATGCGCTTAGTTTTAAGAATAAGTCATCTCCTACCCAATGTGTTGGCAAACACCTTTCGCTCTCCTGCACTTGCCCTCAATCCTCTCAATGTAAATGGATTACATAGAGATTTTTCTCAACCTGCTTGGATAGAGGAGGAGGAGGAGGTGGAAATTGACCAGAGAAGGCTTCCAGCTGACTACGATCCAGCTAATTTTGATCCAACACAGCATCGTAGTCCTCCAACCGATCGCGTTTTTAGGCTTGTAGATGAAATATCTGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAGATTAGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAGGCAGGAGCTGCCGGATTGGCTGGAATGGCAACAAAGGCCTCATCAGCCACTGCCAAGGAGGAGAAGAAGACAGAAAAGACTGTTTTTGAGTTGAAACTAGAGTCTTATGAAGCGGCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGCCTTAAAGAAGCGAAGGATCTAGTGGAGAAAACCCCGTCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAACTAATTGAAAAAATGAAGGCTCTTGGTGCAAAGGTGATCTTGGAATGA

Coding sequence (CDS)

ATGCGCTTAGTTTTAAGAATAAGTCATCTCCTACCCAATGTGTTGGCAAACACCTTTCGCTCTCCTGCACTTGCCCTCAATCCTCTCAATGTAAATGGATTACATAGAGATTTTTCTCAACCTGCTTGGATAGAGGAGGAGGAGGAGGTGGAAATTGACCAGAGAAGGCTTCCAGCTGACTACGATCCAGCTAATTTTGATCCAACACAGCATCGTAGTCCTCCAACCGATCGCGTTTTTAGGCTTGTAGATGAAATATCTGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAGATTAGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAGGCAGGAGCTGCCGGATTGGCTGGAATGGCAACAAAGGCCTCATCAGCCACTGCCAAGGAGGAGAAGAAGACAGAAAAGACTGTTTTTGAGTTGAAACTAGAGTCTTATGAAGCGGCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGCCTTAAAGAAGCGAAGGATCTAGTGGAGAAAACCCCGTCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAACTAATTGAAAAAATGAAGGCTCTTGGTGCAAAGGTGATCTTGGAATGA

Protein sequence

MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE

Homology

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BLAST of CmoCh13G008740 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 59/131 (45.04%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 82  LVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATAKEEKKT 141
           +V+++S LTL++ AELS  L +  G++    V V+ A AAG +  A              
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVV-ASAAGESAAAV------------A 66

Query: 142 EKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIE 201
           EKT FE+ LE ++A  KI +IKEVR+ T+LGLKEAKD VE  P  LK G+SK+E E+L +
Sbjct: 67  EKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKK 124

Query: 202 KMKALGAKVIL 213
           K++A GA +IL
Sbjct: 127 KLEAAGATIIL 124

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BLAST of CmoCh13G008740 vs. ExPASy Swiss-Prot
Match: Q9USJ9 (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 9.4e-17
Identity = 57/136 (41.91%), Postives = 85/136 (62.50%), Query Frame = 0


Query: 78  RVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATAKE 137
           ++  +VD+IS L+L+E +EL   L+++L + +   +  M A A  +A  A   S   A E
Sbjct: 43  QIGEMVDKISSLSLLETSELVKQLKEKLNIAE---IAPMAAVAPAVASAA--PSEEKAPE 102

Query: 138 EKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGE 197
           EKK EKT + LKLES++A +K K+IKEV+S   L L +AK  VE  P VLK+ + KE+ E
Sbjct: 103 EKKEEKTTWNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAE 162

Query: 198 QLIEKMKALGAKVILE 214
            +  K++ L  KV+LE
Sbjct: 163 AIKSKLEKLSCKVVLE 173

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BLAST of CmoCh13G008740 vs. ExPASy Swiss-Prot
Match: A6X0A8 (50S ribosomal protein L7/L12 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / JCM 21032 / NBRC 15819 / NCTC 12168) OX=439375 GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-15
Identity = 57/133 (42.86%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 81  RLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATAKEEKK 140
           ++VD++S LT++E AELS +L ++ G++    V V  AG A  A  A             
Sbjct: 6   KIVDDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAGGAAPAAAA------------- 65

Query: 141 TEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLI 200
            EKT F++ L     A KI +IKEVR+ T LGLKEAKDLVE  P  +K+G SK+E E++ 
Sbjct: 66  EEKTEFDVVLAD-GGANKINVIKEVRAITGLGLKEAKDLVEGAPKAVKEGASKDEAEKIK 124

Query: 201 EKMKALGAKVILE 214
            +++A GAKV L+
Sbjct: 126 AQLEAAGAKVELK 124

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BLAST of CmoCh13G008740 vs. ExPASy Swiss-Prot
Match: A5VR16 (50S ribosomal protein L7/L12 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) OX=444178 GN=rplL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-15
Identity = 56/133 (42.11%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 81  RLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATAKEEKK 140
           ++V+++S LT++E AELS +L ++ G++    V V  AG A  A  A             
Sbjct: 6   KIVEDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAGGAAPAAAA------------- 65

Query: 141 TEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLI 200
            EKT F++ L     A KI +IKEVR+ T LGLKEAKDLVE  P  +K+G+SK+E E++ 
Sbjct: 66  EEKTEFDVVLAD-GGANKINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGVSKDEAEKIK 124

Query: 201 EKMKALGAKVILE 214
            +++A GAKV L+
Sbjct: 126 AQLEAAGAKVELK 124

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BLAST of CmoCh13G008740 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-15
Identity = 55/132 (41.67%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 82  LVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATAKEEKKT 141
           ++D +  L+L+E +EL   + +  G++     GV+ A A G  G       A+A  E   
Sbjct: 8   ILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMA-APGAGG------GASAAGEAAE 67

Query: 142 EKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIE 201
           EKT F++ LES++AAAKIK++KEVR+ T LGL EAK +VE  P  +K+G SKE+ E L +
Sbjct: 68  EKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKK 127

Query: 202 KMKALGAKVILE 214
            ++A+G KV L+
Sbjct: 128 AIEAVGGKVTLK 132

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BLAST of CmoCh13G008740 vs. ExPASy TrEMBL
Match: A0A6J1E822 (uncharacterized protein LOC111431646 OS=Cucurbita moschata OX=3662 GN=LOC111431646 PE=3 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.7e-106
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPAD 60
           MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPAD
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPAD 60

Query: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA 120
           YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA
Sbjct: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA 120

Query: 121 AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180
           AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV
Sbjct: 121 AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180

Query: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]

BLAST of CmoCh13G008740 vs. ExPASy TrEMBL
Match: A0A6J1KHE7 (uncharacterized protein LOC111495277 OS=Cucurbita maxima OX=3661 GN=LOC111495277 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.2e-100
Identity = 206/213 (96.71%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPAD 60
           MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHR+F+QPA I EEEEVEIDQRRLPAD
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFAQPARI-EEEEVEIDQRRLPAD 60

Query: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA 120
           YD ANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRK+LG+TDMPVVGVMKAGA
Sbjct: 61  YDLANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGLTDMPVVGVMKAGA 120

Query: 121 AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180
           AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV
Sbjct: 121 AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180

Query: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212

[Close]

BLAST of CmoCh13G008740 vs. ExPASy TrEMBL
Match: A0A6J1C7E3 (uncharacterized protein LOC111009067 OS=Momordica charantia OX=3673 GN=LOC111009067 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.9e-92
Identity = 192/214 (89.72%), Postives = 202/214 (94.39%), Query Frame = 0


Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEE-EVEIDQRRLPA 60
           M LVLRI HLLPNV ANT RSPA+ALNPLN NGLHR+++QPA IEEEE EVEIDQRRLPA
Sbjct: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNSNGLHRNYAQPARIEEEEDEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVEVAELS+ILRK+LGMTDMPVVGVMK G
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSTILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGL GMA KAS+A AKEEKK EKTV+ELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLGGMAMKASTA-AKEEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]

BLAST of CmoCh13G008740 vs. ExPASy TrEMBL
Match: A0A6J1JZ85 (uncharacterized protein LOC111490181 OS=Cucurbita maxima OX=3661 GN=LOC111490181 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 9.5e-89
Identity = 186/214 (86.92%), Postives = 193/214 (90.19%), Query Frame = 0


Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWI-EEEEEVEIDQRRLPA 60
           M LVLR  HLLP V  N  RSP  A    N+NGLHR+++QPAWI EEEEEVEIDQRRLPA
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVAA---FNLNGLHRNYAQPAWIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAG 120
           DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRK+LGMTDMPVVGVMK G
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGM  KAS+A AKE KK EKTV+ELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMGMKASAAAAKEVKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

[Close]

BLAST of CmoCh13G008740 vs. ExPASy TrEMBL
Match: A0A5D3BKQ0 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005140 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.1e-88
Identity = 182/214 (85.05%), Postives = 195/214 (91.12%), Query Frame = 0


Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWI-EEEEEVEIDQRRLPA 60
           MRLV RISHLLPNV ANT RS  +ALNPLN NG+HR+++QP+ I EEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGVHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVEVAELSSIL K+LGMT+MPV G MK G
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K SSATAKEEKK EKTV+ELKLESYEA+AKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKVSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           V+K PSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIIEKMKALGAKVILE 214

[Close]

BLAST of CmoCh13G008740 vs. NCBI nr
Match: XP_022924112.1 (uncharacterized protein LOC111431646 [Cucurbita moschata])

HSP 1 Score: 395.2 bits (1014), Expect = 3.6e-106
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPAD 60
           MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPAD
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPAD 60

Query: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA 120
           YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA
Sbjct: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA 120

Query: 121 AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180
           AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV
Sbjct: 121 AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180

Query: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]

BLAST of CmoCh13G008740 vs. NCBI nr
Match: KAG6584188.1 (50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019780.1 50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 386.7 bits (992), Expect = 1.3e-103
Identity = 210/213 (98.59%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPAD 60
           MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHR+FSQPA IEEEEEVEIDQRRLPAD
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFSQPARIEEEEEVEIDQRRLPAD 60

Query: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA 120
           YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRK+LGMTDMPVVGVMKAGA
Sbjct: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKAGA 120

Query: 121 AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180
           AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV
Sbjct: 121 AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180

Query: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]

BLAST of CmoCh13G008740 vs. NCBI nr
Match: XP_023519323.1 (uncharacterized protein LOC111782753 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.9 bits (977), Expect = 7.0e-102
Identity = 207/213 (97.18%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPAD 60
           MRLVLRISHLLPNVLANTFRSPALA NPLNVNGLHR+F+Q A IEEEEEVEIDQRRLPAD
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALAFNPLNVNGLHRNFAQSARIEEEEEVEIDQRRLPAD 60

Query: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA 120
           YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRK+LGMTDMPVVGVMKAGA
Sbjct: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKAGA 120

Query: 121 AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180
           AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV
Sbjct: 121 AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180

Query: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]

BLAST of CmoCh13G008740 vs. NCBI nr
Match: XP_023001011.1 (uncharacterized protein LOC111495277 [Cucurbita maxima] >XP_023001013.1 uncharacterized protein LOC111495277 [Cucurbita maxima])

HSP 1 Score: 374.4 bits (960), Expect = 6.5e-100
Identity = 206/213 (96.71%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPAD 60
           MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHR+F+QPA I EEEEVEIDQRRLPAD
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFAQPARI-EEEEVEIDQRRLPAD 60

Query: 61  YDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA 120
           YD ANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRK+LG+TDMPVVGVMKAGA
Sbjct: 61  YDLANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGLTDMPVVGVMKAGA 120

Query: 121 AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180
           AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV
Sbjct: 121 AGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLV 180

Query: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Sbjct: 181 EKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212

[Close]

BLAST of CmoCh13G008740 vs. NCBI nr
Match: XP_038876937.1 (50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 354.0 bits (907), Expect = 9.1e-94
Identity = 194/215 (90.23%), Postives = 205/215 (95.35%), Query Frame = 0


Query: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWIE-EEEEVEIDQRRLPA 60
           M LVLRI HLLPNV ANT RSPA+ALNPLN+NGLHR+++QPA IE EEEE+EIDQRRLPA
Sbjct: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAG 120
           DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRK+LGMTDMPVVGVMK G
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMATKA-SSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKD 180
           AAGLAGMA KA SSATAKEEKK EKTV+ELKLESYEA+AKIKIIKEVRSFTDLGLKEAKD
Sbjct: 121 AAGLAGMAMKASSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180

Query: 181 LVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
           LVEKTPSVLKKGLSKEEGE++IEKMKALGAKVILE
Sbjct: 181 LVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 215

[Close]

BLAST of CmoCh13G008740 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 238.4 bits (607), Expect = 5.2e-63
Identity = 128/191 (67.02%), Postives = 156/191 (81.68%), Query Frame = 0


Query: 26  LNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDE 85
           L+ L+  G +R ++QPA IE+EEE E DQR+LP DYDPA FDPT+HRSPPTDRVFRLVDE
Sbjct: 18  LSLLSRIGGYRSYTQPAKIEDEEEEEFDQRKLPTDYDPATFDPTEHRSPPTDRVFRLVDE 77

Query: 86  ISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA---AGLAGMATKASSATAKEEKKTE 145
           IS LTL+E++EL SI+ K+ GMT++P V VMK GA    G+ G     S +   EE K E
Sbjct: 78  ISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGGGVGVGGGGGMVSQSGVSEEAKVE 137

Query: 146 KTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEK 205
           KTVFE+KLES+EA+AKIKIIKE+RSFTDLGLKEAK LVEKTP++LK GLSKEEGE+++EK
Sbjct: 138 KTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGLSKEEGEKILEK 197

Query: 206 MKALGAKVILE 214
           +KALGAKV+LE
Sbjct: 198 LKALGAKVVLE 208

[Close]

BLAST of CmoCh13G008740 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 238.4 bits (607), Expect = 5.2e-63
Identity = 128/191 (67.02%), Postives = 156/191 (81.68%), Query Frame = 0


Query: 26  LNPLNVNGLHRDFSQPAWIEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDE 85
           L+ L+  G +R ++QPA IE+EEE E DQR+LP DYDPA FDPT+HRSPPTDRVFRLVDE
Sbjct: 18  LSLLSRIGGYRSYTQPAKIEDEEEEEFDQRKLPTDYDPATFDPTEHRSPPTDRVFRLVDE 77

Query: 86  ISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGA---AGLAGMATKASSATAKEEKKTE 145
           IS LTL+E++EL SI+ K+ GMT++P V VMK GA    G+ G     S +   EE K E
Sbjct: 78  ISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGGGVGVGGGGGMVSQSGVSEEAKVE 137

Query: 146 KTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEK 205
           KTVFE+KLES+EA+AKIKIIKE+RSFTDLGLKEAK LVEKTP++LK GLSKEEGE+++EK
Sbjct: 138 KTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGLSKEEGEKILEK 197

Query: 206 MKALGAKVILE 214
           +KALGAKV+LE
Sbjct: 198 LKALGAKVVLE 208

[Close]

BLAST of CmoCh13G008740 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-31
Identity = 73/145 (50.34%), Postives = 110/145 (75.86%), Query Frame = 0


Query: 71  HRSPPT--DRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMAT 130
           + SP T  + V ++V+E+S LTL+E  +L+ ILR++L ++++PV+  M  G +     A+
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGAS 94

Query: 131 KASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLK 190
           K++    KE+KK  KT F++ L++Y+A +KIK+IKEVR+ T LGLKEAKDLVEK P++LK
Sbjct: 95  KSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLK 154

Query: 191 KGLSKEEGEQLIEKMKALGAKVILE 214
           KG+SKEE E++IEK+KA+GAKV +E
Sbjct: 155 KGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]

BLAST of CmoCh13G008740 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 105.1 bits (261), Expect = 6.9e-23
Identity = 62/138 (44.93%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 76  TDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAGLAGMATKASSATA 135
           T ++ R+ D++  L  +E+ + S +   ++G+            A  + G    AS++T 
Sbjct: 39  TKKLERIADDLLKLNRIELYDYSLLFSHKIGLN-------RYGSAVAVTGSVGDASAST- 98

Query: 136 KEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEE 195
            E K  EKT F++KLE +EAA+KIK+IKE+R+FTDLGLKEAK LVEK P ++K GL+KEE
Sbjct: 99  -ETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEE 158

Query: 196 GEQLIEKMKALGAKVILE 214
            E+++EK+KA+GA V LE
Sbjct: 159 AEKIMEKLKAVGAIVALE 167

[Close]

BLAST of CmoCh13G008740 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 102.4 bits (254), Expect = 4.5e-22
Identity = 57/151 (37.75%), Postives = 92/151 (60.93%), Query Frame = 0


Query: 63  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAGAAG 122
           P+ +DP   R  P+ ++  L + I+ L+  E  ++   L + L +    ++         
Sbjct: 44  PSVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMI--------S 103

Query: 123 LAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK 182
             G+  K  +     E+K EKT F++KLE + A+ KIK+IKEVR+FT LGLKEAK+LVEK
Sbjct: 104 SDGIGAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEK 163

Query: 183 TPSVLKKGLSKEEGEQLIEKMKALGAKVILE 214
            P++LK+G++KEE  ++I K+KA+G   ++E
Sbjct: 164 VPAILKQGVTKEEANEIIAKIKAVGGIAVME 186

The following BLAST results are available for this feature:

BLAST of CmoCh13G008740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41189	1.4e-17	45.04	50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=...	[more]
Q9USJ9	9.4e-17	41.91	54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
A6X0A8	1.4e-15	42.86	50S ribosomal protein L7/L12 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6...	[more]
A5VR16	2.3e-15	42.11	50S ribosomal protein L7/L12 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC...	[more]
A9BDG4	2.3e-15	41.67	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930...	[more]

BLAST of CmoCh13G008740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E822	1.7e-106	100.00	uncharacterized protein LOC111431646 OS=Cucurbita moschata OX=3662 GN=LOC1114316...	[more]
A0A6J1KHE7	3.2e-100	96.71	uncharacterized protein LOC111495277 OS=Cucurbita maxima OX=3661 GN=LOC111495277...	[more]
A0A6J1C7E3	1.9e-92	89.72	uncharacterized protein LOC111009067 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1JZ85	9.5e-89	86.92	uncharacterized protein LOC111490181 OS=Cucurbita maxima OX=3661 GN=LOC111490181...	[more]
A0A5D3BKQ0	2.1e-88	85.05	50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of CmoCh13G008740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924112.1	3.6e-106	100.00	uncharacterized protein LOC111431646 [Cucurbita moschata]	[more]
KAG6584188.1	1.3e-103	98.59	50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_023519323.1	7.0e-102	97.18	uncharacterized protein LOC111782753 [Cucurbita pepo subsp. pepo]	[more]
XP_023001011.1	6.5e-100	96.71	uncharacterized protein LOC111495277 [Cucurbita maxima] >XP_023001013.1 uncharac...	[more]
XP_038876937.1	9.1e-94	90.23	50S ribosomal protein L7/L12 [Benincasa hispida]	[more]

BLAST of CmoCh13G008740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70190.1	5.2e-63	67.02	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT1G70190.2	5.2e-63	67.02	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT4G36420.1	1.1e-31	50.34	Ribosomal protein L12 family protein	[more]
AT4G37660.1	6.9e-23	44.93	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT3G06040.1	4.5e-22	37.75	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 82..122 e-value: 1.3E-9 score: 37.6
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 80..141 e-value: 1.2E-6 score: 30.4
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 81..142
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 142..212 e-value: 6.9E-21 score: 76.1
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 142..212
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 146..212 e-value: 1.0E-20 score: 73.9
IPR015608	Putative ribosomal protein L7/L12, plants	PANTHER	PTHR45987:SF1	F20P5.9 PROTEIN	coord: 28..213
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 28..213
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 76..213 score: 17.59495
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 78..212 e-value: 1.79023E-44 score: 142.68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G008740.1	CmoCh13G008740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome