CmoCh13G007640 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G007640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr13: 7406358 .. 7406696 (+)
RNA-Seq Expression	CmoCh13G007640
Synteny	CmoCh13G007640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGGTTAGTAACAAGGAGGCAAAATGGGTACTCAAGGATGGAGAAGGAAGACCCAGAAGAGAAAAAGCACAGGCAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAACAGTGGCAGTAGGAGGAGATCTTCGTGTCTCAGAATCAGAATAAGGAAGTTTAAGCTAAGGATTGGGAGGAGGTTGAAGAAGCTGAAGAAGACGATGTCAATGGGGATTTGCACTGCAAGAAATGGGATCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAGAGCTTGTTCGGACGAGCTAAGGAGGAAGCTTTGGCCTTTCCTTCTTTGGTTTCTTGA

mRNA sequence

ATGAGTGGGTTAGTAACAAGGAGGCAAAATGGGTACTCAAGGATGGAGAAGGAAGACCCAGAAGAGAAAAAGCACAGGCAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAACAGTGGCAGTAGGAGGAGATCTTCGTGTCTCAGAATCAGAATAAGGAAGTTTAAGCTAAGGATTGGGAGGAGGTTGAAGAAGCTGAAGAAGACGATGTCAATGGGGATTTGCACTGCAAGAAATGGGATCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAGAGCTTGTTCGGACGAGCTAAGGAGGAAGCTTTGGCCTTTCCTTCTTTGGTTTCTTGA

Coding sequence (CDS)

ATGAGTGGGTTAGTAACAAGGAGGCAAAATGGGTACTCAAGGATGGAGAAGGAAGACCCAGAAGAGAAAAAGCACAGGCAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAACAGTGGCAGTAGGAGGAGATCTTCGTGTCTCAGAATCAGAATAAGGAAGTTTAAGCTAAGGATTGGGAGGAGGTTGAAGAAGCTGAAGAAGACGATGTCAATGGGGATTTGCACTGCAAGAAATGGGATCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAGAGCTTGTTCGGACGAGCTAAGGAGGAAGCTTTGGCCTTTCCTTCTTTGGTTTCTTGA

Protein sequence

MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLRIGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRAKEEALAFPSLVS

Homology

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BLAST of CmoCh13G007640 vs. ExPASy TrEMBL
Match: A0A6J1KG77 (uncharacterized protein LOC111495486 OS=Cucurbita maxima OX=3661 GN=LOC111495486 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.4e-51
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60
           MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSG+RRRSSCLRIRIRKFKLR
Sbjct: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLR 60

Query: 61  IGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRAKEEALAFPSLVS 113
           IGRRLKKLKKTMSMG CTARNGICKQFGQLRTCKSLFGR KEEALAFPSLVS
Sbjct: 61  IGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRPKEEALAFPSLVS 112

[Close]

BLAST of CmoCh13G007640 vs. ExPASy TrEMBL
Match: A0A6J1CEK3 (uncharacterized protein LOC111010796 OS=Momordica charantia OX=3673 GN=LOC111010796 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 93/113 (82.30%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60
           MS ++TR+Q+GYSRMEKEDPEEKKHR+AQFLIYKIMEQANSGSRRR +CLRIRIRKFKLR
Sbjct: 1   MSVILTRKQSGYSRMEKEDPEEKKHREAQFLIYKIMEQANSGSRRRPTCLRIRIRKFKLR 60

Query: 61  IGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRA-KEEALAFPSLVS 113
           IGRRLKKL+K+MS  + TAR GICKQ GQLRTCKSLFGR  K E LAFPSLVS
Sbjct: 61  IGRRLKKLRKSMSASLSTARIGICKQIGQLRTCKSLFGRGRKVETLAFPSLVS 113

[Close]

BLAST of CmoCh13G007640 vs. ExPASy TrEMBL
Match: A0A0A0LUT4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063510 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.4e-36
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 1   MSGLVT-RRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKL 60
           MS L+T RR  GYS+MEKEDP+EKKHRQAQFLIYKIMEQA++GS+RR SCLRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRAKEEALAFPS 110
           R+GRR KK+KKTM+M   TAR GIC QFGQLR+CKSLFG+ K E L FP+
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPT 110

[Close]

BLAST of CmoCh13G007640 vs. ExPASy TrEMBL
Match: W9RFE3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006294 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 57/96 (59.38%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 4  LVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLRIGR 63
          LV R+ N YS+++KEDPEE+  R+AQFLIYK+MEQA+S SRRR S LRIRIRK K++IG+
Sbjct: 3  LVLRKPNAYSKIDKEDPEERNRRRAQFLIYKVMEQADSMSRRRPSYLRIRIRKLKVKIGK 62

Query: 64 RLKKLKKTMSMGICTARNGICKQF-GQLRTCKSLFG 99
          RL KL+K+M + I  A+  +CKQ   Q +TC+ LFG
Sbjct: 63 RLTKLRKSMLLSISAAKVSVCKQVCSQFKTCRRLFG 98

[Close]

BLAST of CmoCh13G007640 vs. ExPASy TrEMBL
Match: A0A5N5FGX9 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_002006 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.5e-19
Identity = 56/103 (54.37%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60
           M+ ++ +   GYS+++KEDPE+  HR+AQFLIYK+++QA   +RRR S LRIRIRK K++
Sbjct: 1   MAVMIRKSYGGYSKLDKEDPEDVNHRRAQFLIYKVLQQAE--TRRRPSNLRIRIRKLKVK 60

Query: 61  IGRRLKKLKKTMSMGICTARNGICKQ-FGQLRTCKSLFGRAKE 103
           IGRRLKKL+K+M +GI  AR  + K+ F QL+TC +LFGR  +
Sbjct: 61  IGRRLKKLRKSMLLGISAARVCVYKRVFNQLKTCMTLFGRGDQ 101

[Close]

BLAST of CmoCh13G007640 vs. NCBI nr
Match: KAG7019685.1 (hypothetical protein SDJN02_18648, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60
           MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR
Sbjct: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60

Query: 61  IGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRAKEEALAFPSLVS 113
           IGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRAKEEALAFPSLVS
Sbjct: 61  IGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRAKEEALAFPSLVS 112

[Close]

BLAST of CmoCh13G007640 vs. NCBI nr
Match: KAG6584084.1 (hypothetical protein SDJN03_20016, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60
           MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR
Sbjct: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60

Query: 61  IGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRAKEEALAFPSLVS 113
           IGRRLKKLKKTMSMGICTAR GICKQFGQLRTCKSLFGRAKEEALAFPSLVS
Sbjct: 61  IGRRLKKLKKTMSMGICTARIGICKQFGQLRTCKSLFGRAKEEALAFPSLVS 112

[Close]

BLAST of CmoCh13G007640 vs. NCBI nr
Match: XP_023001322.1 (uncharacterized protein LOC111495486 [Cucurbita maxima])

HSP 1 Score: 211.8 bits (538), Expect = 2.9e-51
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60
           MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSG+RRRSSCLRIRIRKFKLR
Sbjct: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLR 60

Query: 61  IGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRAKEEALAFPSLVS 113
           IGRRLKKLKKTMSMG CTARNGICKQFGQLRTCKSLFGR KEEALAFPSLVS
Sbjct: 61  IGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRPKEEALAFPSLVS 112

[Close]

BLAST of CmoCh13G007640 vs. NCBI nr
Match: XP_022140046.1 (uncharacterized protein LOC111010796 [Momordica charantia])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 93/113 (82.30%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60
           MS ++TR+Q+GYSRMEKEDPEEKKHR+AQFLIYKIMEQANSGSRRR +CLRIRIRKFKLR
Sbjct: 1   MSVILTRKQSGYSRMEKEDPEEKKHREAQFLIYKIMEQANSGSRRRPTCLRIRIRKFKLR 60

Query: 61  IGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRA-KEEALAFPSLVS 113
           IGRRLKKL+K+MS  + TAR GICKQ GQLRTCKSLFGR  K E LAFPSLVS
Sbjct: 61  IGRRLKKLRKSMSASLSTARIGICKQIGQLRTCKSLFGRGRKVETLAFPSLVS 113

[Close]

BLAST of CmoCh13G007640 vs. NCBI nr
Match: KGN64527.1 (hypothetical protein Csa_013452 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-35
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 1   MSGLVT-RRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKL 60
           MS L+T RR  GYS+MEKEDP+EKKHRQAQFLIYKIMEQA++GS+RR SCLRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRAKEEALAFPS 110
           R+GRR KK+KKTM+M   TAR GIC QFGQLR+CKSLFG+ K E L FP+
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPT 110

[Close]

BLAST of CmoCh13G007640 vs. TAIR 10
Match: AT4G04745.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 8.6e-09
Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGS-----RRRSS--CLRIR 60
           M+ +V      Y++MEKEDP+E  HR+AQFLI K++E+A+S +     RRRSS   + IR
Sbjct: 26  MALMVKNSPYEYTKMEKEDPQELIHRRAQFLIQKVLERADSKTRQHQQRRRSSGPLIMIR 85

Query: 61  IRKFKLRIGRRLKKLKKT 72
           +   ++RIG++L+KL+KT
Sbjct: 86  VVGIRMRIGKKLRKLRKT 103

[Close]

BLAST of CmoCh13G007640 vs. TAIR 10
Match: AT1G11655.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 7.3e-08
Identity = 30/63 (47.62%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 12 YSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRR--RSSCLRIRIRKFKLRIGRRLKKLK 71
          YS+M+KEDPEE   R+A+FLIYK +++A+  SRR   SS +R+++   K++IG+RL KL+
Sbjct: 10 YSKMDKEDPEEVLSRRAKFLIYKTLQEADLISRRDPHSSFIRLKLYLLKVKIGKRLAKLR 69

Query: 72 KTM 73
          +++
Sbjct: 70 RSV 72

[Close]

BLAST of CmoCh13G007640 vs. TAIR 10
Match: AT4G21902.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04745.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 26/75 (34.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 7  RRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQAN----SGSRRRSSCLRI---RIRKFKL 66
          +  N Y+++EKED  E  HR+AQFLI+KI+++A+       ++R++ +++   R+   ++
Sbjct: 5  KNPNQYTKIEKEDLNEIIHRRAQFLIHKILQRADIETLRQQQKRNTTIKLFSFRVVGIRM 64

Query: 67 RIGRRLKKLKKTMSM 75
          +IG++L+KL+K+  M
Sbjct: 65 KIGKKLRKLRKSCVM 79

The following BLAST results are available for this feature:

BLAST of CmoCh13G007640 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G007640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KG77	1.4e-51	97.32	uncharacterized protein LOC111495486 OS=Cucurbita maxima OX=3661 GN=LOC111495486...	[more]
A0A6J1CEK3	1.1e-40	82.30	uncharacterized protein LOC111010796 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A0A0LUT4	8.4e-36	75.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063510 PE=4 SV=1	[more]
W9RFE3	1.7e-20	59.38	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006294 PE=4 SV=1	[more]
A0A5N5FGX9	5.5e-19	54.37	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]

BLAST of CmoCh13G007640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019685.1	1.2e-52	100.00	hypothetical protein SDJN02_18648, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6584084.1	1.3e-51	99.11	hypothetical protein SDJN03_20016, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023001322.1	2.9e-51	97.32	uncharacterized protein LOC111495486 [Cucurbita maxima]	[more]
XP_022140046.1	2.3e-40	82.30	uncharacterized protein LOC111010796 [Momordica charantia]	[more]
KGN64527.1	1.7e-35	75.45	hypothetical protein Csa_013452 [Cucumis sativus]	[more]

BLAST of CmoCh13G007640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04745.1	8.6e-09	46.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G11655.1	7.3e-08	47.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G21902.1	1.7e-04	34.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR35687:SF1	OS07G0516700 PROTEIN	coord: 4..101
None	No IPR available	PANTHER	PTHR35687	OS07G0516700 PROTEIN	coord: 4..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G007640.1	CmoCh13G007640.1	mRNA