CmoCh13G006300 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G006300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Cmo_Chr13: 6783133 .. 6783690 (-)
RNA-Seq Expression	CmoCh13G006300
Synteny	CmoCh13G006300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACAGAAGGCAGAAAAGATTCGACGGAAGGTGGGTCATCGTCGAGGACGGCGGCGGGGAGCTCTGCAGCGGCGGATCAGCAGCAGCAGCAAACGTCGGCGGCACTAAGCCGGTACGAGTCGCAGAAAAAGCGGGACTGGAACACGTTCGGACAGTATCTGAAGAATCAAACGCCGCCGGTTGCGCTGTCACAGTGCAACTGCAACCACGTGGTGGAATTCATGAGGTACCTGGACCAGTTCGGAAAAACTAAGGTTCACTTACACGGGTGTGTTTTCTTCGGACAGCCTGACCCACCTGCCCCTTGCACTTGCCCACTCCGGCAAGCATGGGGCAGTCTAGATGCCCTGATCGGACGGCTGAGAGCGGCGTACGAGGAGCACGGAGGATCGCCGGAGACAAACCCTTTTGGAAATGGAGCAATTCGAGTGTATTTGAGGGAAGTGAAGGAGTGTCAAGCGAAAGCAAGAGGGATTCCGTACAAGAAAAAGAAGAGAAAAAGAAGCCAATTGAAGGGCAACGAGGAGGACAACCAACCCAAGCTGCTTCCTTGA

mRNA sequence

ATGTCAACAGAAGGCAGAAAAGATTCGACGGAAGGTGGGTCATCGTCGAGGACGGCGGCGGGGAGCTCTGCAGCGGCGGATCAGCAGCAGCAGCAAACGTCGGCGGCACTAAGCCGGTACGAGTCGCAGAAAAAGCGGGACTGGAACACGTTCGGACAGTATCTGAAGAATCAAACGCCGCCGGTTGCGCTGTCACAGTGCAACTGCAACCACGTGGTGGAATTCATGAGGTACCTGGACCAGTTCGGAAAAACTAAGGTTCACTTACACGGGTGTGTTTTCTTCGGACAGCCTGACCCACCTGCCCCTTGCACTTGCCCACTCCGGCAAGCATGGGGCAGTCTAGATGCCCTGATCGGACGGCTGAGAGCGGCGTACGAGGAGCACGGAGGATCGCCGGAGACAAACCCTTTTGGAAATGGAGCAATTCGAGTGTATTTGAGGGAAGTGAAGGAGTGTCAAGCGAAAGCAAGAGGGATTCCGTACAAGAAAAAGAAGAGAAAAAGAAGCCAATTGAAGGGCAACGAGGAGGACAACCAACCCAAGCTGCTTCCTTGA

Coding sequence (CDS)

ATGTCAACAGAAGGCAGAAAAGATTCGACGGAAGGTGGGTCATCGTCGAGGACGGCGGCGGGGAGCTCTGCAGCGGCGGATCAGCAGCAGCAGCAAACGTCGGCGGCACTAAGCCGGTACGAGTCGCAGAAAAAGCGGGACTGGAACACGTTCGGACAGTATCTGAAGAATCAAACGCCGCCGGTTGCGCTGTCACAGTGCAACTGCAACCACGTGGTGGAATTCATGAGGTACCTGGACCAGTTCGGAAAAACTAAGGTTCACTTACACGGGTGTGTTTTCTTCGGACAGCCTGACCCACCTGCCCCTTGCACTTGCCCACTCCGGCAAGCATGGGGCAGTCTAGATGCCCTGATCGGACGGCTGAGAGCGGCGTACGAGGAGCACGGAGGATCGCCGGAGACAAACCCTTTTGGAAATGGAGCAATTCGAGTGTATTTGAGGGAAGTGAAGGAGTGTCAAGCGAAAGCAAGAGGGATTCCGTACAAGAAAAAGAAGAGAAAAAGAAGCCAATTGAAGGGCAACGAGGAGGACAACCAACCCAAGCTGCTTCCTTGA

Protein sequence

MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEEDNQPKLLP

Homology

[Close]

BLAST of CmoCh13G006300 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.9e-66
Identity = 114/144 (79.17%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 38  SRYESQKKRDWNTFGQYLKNQTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQ 97
           SRYESQK+RDWNTFGQYLKNQ PPV +S C+CNHV++F+RYLDQFGKTKVH+ GC+F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 98  PDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKA 157
           P+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPF +GAIRVYLREV+ECQAKA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 158 RGIPYKKKKRKR--SQLKGNEEDN 180
           RGIPYKKKK+K+   ++ G  ED+
Sbjct: 144 RGIPYKKKKKKKPTPEMGGGREDS 167

[Close]

BLAST of CmoCh13G006300 vs. ExPASy Swiss-Prot
Match: Q9SN52 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LSH9 PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.9e-59
Identity = 106/141 (75.18%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 32  QTSAALSRYESQKKRDWNTFGQYLKNQTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHG 91
           Q    LSRYESQK+RDWNTF QYLK+Q PP+ +SQ +  HV+ F+RYLDQFGKTKVH   
Sbjct: 30  QPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQA 89

Query: 92  CVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH-GGSPETNPFGNGAIRVYLREV 151
           CVFFGQPDPP PCTCPL+QAWGSLDALIGRLRAAYEEH GGSP+TNPF NG+IRV+LREV
Sbjct: 90  CVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREV 149

Query: 152 KECQAKARGIPYKKKKRKRSQ 172
           +E QAKARGIPY+KKKR++++
Sbjct: 150 RESQAKARGIPYRKKKRRKTK 170

[Close]

BLAST of CmoCh13G006300 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-58
Identity = 112/164 (68.29%), Postives = 130/164 (79.27%), Query Frame = 0


Query: 8   DSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTPPVALSQC 67
           D +  G SS  A G+ A A     Q  A LSRYESQK+RDWNTF QYL+N  PP+ L++C
Sbjct: 2   DPSGPGPSSAAAGGAPAVA--AAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARC 61

Query: 68  NCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYE 127
           +  HV+EF+RYLDQFGKTKVH  GC F+GQP PP PC CPLRQAWGSLDALIGRLRAAYE
Sbjct: 62  SGAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYE 121

Query: 128 EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQ 172
           E GG+PE+NPF   A+R+YLREV++ QAKARGIPY+KKKRKRSQ
Sbjct: 122 ESGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQ 163

[Close]

BLAST of CmoCh13G006300 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-58
Identity = 112/164 (68.29%), Postives = 130/164 (79.27%), Query Frame = 0


Query: 8   DSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTPPVALSQC 67
           D +  G SS  A G+ A A     Q  A LSRYESQK+RDWNTF QYL+N  PP+ L++C
Sbjct: 2   DPSGPGPSSAAAGGAPAVA--AAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARC 61

Query: 68  NCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYE 127
           +  HV+EF+RYLDQFGKTKVH  GC F+GQP PP PC CPLRQAWGSLDALIGRLRAAYE
Sbjct: 62  SGAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYE 121

Query: 128 EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQ 172
           E GG+PE+NPF   A+R+YLREV++ QAKARGIPY+KKKRKRSQ
Sbjct: 122 ESGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQ 163

[Close]

BLAST of CmoCh13G006300 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-57
Identity = 106/156 (67.95%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 14  SSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTPPVALSQCNCNHVV 73
           +++ T   SS+++       +  LSRYE+QK+RDWNTFGQYL+N  PP++LS+C+  HV+
Sbjct: 23  AAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVL 82

Query: 74  EFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSP 133
           EF+RYLDQFGKTKVH H C FFG P+PPAPC CPLRQAWGSLDALIGRLRAA+EE+GGSP
Sbjct: 83  EFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSP 142

Query: 134 ETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR 170
           ETNPFG  A+R+YLREV++ QAKARGI Y+KKKRKR
Sbjct: 143 ETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of CmoCh13G006300 vs. ExPASy TrEMBL
Match: A0A6J1EJZ8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111434007 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.1e-100
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTP 60
           MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTP
Sbjct: 2   MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTP 61

Query: 61  PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 120
           PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG
Sbjct: 62  PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 121

Query: 121 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEEDNQ 180
           RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEEDNQ
Sbjct: 122 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEEDNQ 181

Query: 181 PKLLP 186
           PKLLP
Sbjct: 182 PKLLP 186

[Close]

BLAST of CmoCh13G006300 vs. ExPASy TrEMBL
Match: A0A6J1KGX1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111495158 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.4e-96
Identity = 180/185 (97.30%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTP 60
           MSTEGRKDSTE GSSSRTAAGSSAAAD  QQQ SAALSRYESQKKRDWNTFGQYLKNQTP
Sbjct: 1   MSTEGRKDSTEAGSSSRTAAGSSAAAD--QQQASAALSRYESQKKRDWNTFGQYLKNQTP 60

Query: 61  PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 120
           PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG
Sbjct: 61  PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEEDNQ 180
           RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGN+EDNQ
Sbjct: 121 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNDEDNQ 180

Query: 181 PKLLP 186
           PKLLP
Sbjct: 181 PKLLP 183

[Close]

BLAST of CmoCh13G006300 vs. ExPASy TrEMBL
Match: A0A1S4E614 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103503180 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.3e-81
Identity = 152/178 (85.39%), Postives = 160/178 (89.89%), Query Frame = 0


Query: 1   MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTP 60
           MSTE RKD TE GSSSRT              T+AALSRYESQK+RDWNTFGQYLKNQTP
Sbjct: 1   MSTEARKDPTEAGSSSRTTT-----------TTTAALSRYESQKRRDWNTFGQYLKNQTP 60

Query: 61  PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 120
           PV+LSQCNCNHV+EF+RYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG
Sbjct: 61  PVSLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEED 179
           RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR+QLK N++D
Sbjct: 121 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD 167

[Close]

BLAST of CmoCh13G006300 vs. ExPASy TrEMBL
Match: A0A5A7UU18 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002260 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.3e-81
Identity = 152/178 (85.39%), Postives = 160/178 (89.89%), Query Frame = 0


Query: 1   MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTP 60
           MSTE RKD TE GSSSRT              T+AALSRYESQK+RDWNTFGQYLKNQTP
Sbjct: 1   MSTEARKDPTEAGSSSRTTT-----------TTTAALSRYESQKRRDWNTFGQYLKNQTP 60

Query: 61  PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 120
           PV+LSQCNCNHV+EF+RYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG
Sbjct: 61  PVSLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEED 179
           RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR+QLK N++D
Sbjct: 121 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD 167

[Close]

BLAST of CmoCh13G006300 vs. ExPASy TrEMBL
Match: A0A0A0M097 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G474480 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.4e-81
Identity = 151/178 (84.83%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTP 60
           MSTEGRKD TE GSSSR               T+AALSRYESQK+RDWNTFGQYLKNQTP
Sbjct: 1   MSTEGRKDPTEAGSSSRATT------------TTAALSRYESQKRRDWNTFGQYLKNQTP 60

Query: 61  PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 120
            V+LSQCNCNHV+EF+RYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG
Sbjct: 61  AVSLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEED 179
           RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR+QLK N++D
Sbjct: 121 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD 166

[Close]

BLAST of CmoCh13G006300 vs. NCBI nr
Match: XP_022927073.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 374.8 bits (961), Expect = 4.3e-100
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTP 60
           MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTP
Sbjct: 2   MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTP 61

Query: 61  PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 120
           PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG
Sbjct: 62  PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 121

Query: 121 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEEDNQ 180
           RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEEDNQ
Sbjct: 122 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEEDNQ 181

Query: 181 PKLLP 186
           PKLLP
Sbjct: 182 PKLLP 186

[Close]

BLAST of CmoCh13G006300 vs. NCBI nr
Match: KAG6583960.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 369.0 bits (946), Expect = 2.4e-98
Identity = 185/189 (97.88%), Postives = 185/189 (97.88%), Query Frame = 0


Query: 1   MSTEGRKDSTEGGSSSRTAAGSSAAAD----QQQQQTSAALSRYESQKKRDWNTFGQYLK 60
           MSTEGRKDSTEGGSSSRTAAGSSAAAD    QQQQQTSAALSRYESQKKRDWNTFGQYLK
Sbjct: 1   MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQQQQQTSAALSRYESQKKRDWNTFGQYLK 60

Query: 61  NQTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLD 120
           NQTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLD
Sbjct: 61  NQTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLD 120

Query: 121 ALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNE 180
           ALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNE
Sbjct: 121 ALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNE 180

Query: 181 EDNQPKLLP 186
           EDNQPKLLP
Sbjct: 181 EDNQPKLLP 189

[Close]

BLAST of CmoCh13G006300 vs. NCBI nr
Match: KAG7019578.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 368.6 bits (945), Expect = 3.1e-98
Identity = 185/190 (97.37%), Postives = 185/190 (97.37%), Query Frame = 0


Query: 1   MSTEGRKDSTEGGSSSRTAAGSSAAAD-----QQQQQTSAALSRYESQKKRDWNTFGQYL 60
           MSTEGRKDSTEGGSSSRTAAGSSAAAD     QQQQQTSAALSRYESQKKRDWNTFGQYL
Sbjct: 2   MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQQQQQQTSAALSRYESQKKRDWNTFGQYL 61

Query: 61  KNQTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSL 120
           KNQTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSL
Sbjct: 62  KNQTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSL 121

Query: 121 DALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGN 180
           DALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGN
Sbjct: 122 DALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGN 181

Query: 181 EEDNQPKLLP 186
           EEDNQPKLLP
Sbjct: 182 EEDNQPKLLP 191

[Close]

BLAST of CmoCh13G006300 vs. NCBI nr
Match: XP_023000826.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 361.3 bits (926), Expect = 5.0e-96
Identity = 180/185 (97.30%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MSTEGRKDSTEGGSSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTP 60
           MSTEGRKDSTE GSSSRTAAGSSAAAD  QQQ SAALSRYESQKKRDWNTFGQYLKNQTP
Sbjct: 1   MSTEGRKDSTEAGSSSRTAAGSSAAAD--QQQASAALSRYESQKKRDWNTFGQYLKNQTP 60

Query: 61  PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 120
           PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG
Sbjct: 61  PVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEEDNQ 180
           RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGN+EDNQ
Sbjct: 121 RLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNDEDNQ 180

Query: 181 PKLLP 186
           PKLLP
Sbjct: 181 PKLLP 183

[Close]

BLAST of CmoCh13G006300 vs. NCBI nr
Match: XP_023519392.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.5 bits (924), Expect = 8.5e-96
Identity = 181/188 (96.28%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 1   MSTEGRKDSTEGGSSSRTAAGSSAAAD---QQQQQTSAALSRYESQKKRDWNTFGQYLKN 60
           MSTEGRKDSTE GSSSRTAAGSS AAD   QQQQQTSAALSRYESQKKRDWNTFGQYLKN
Sbjct: 2   MSTEGRKDSTEAGSSSRTAAGSSTAADQQQQQQQQTSAALSRYESQKKRDWNTFGQYLKN 61

Query: 61  QTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDA 120
           QTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDA
Sbjct: 62  QTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDA 121

Query: 121 LIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNEE 180
           LIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKG EE
Sbjct: 122 LIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGKEE 181

Query: 181 DNQPKLLP 186
           DNQPK LP
Sbjct: 182 DNQPKPLP 189

[Close]

BLAST of CmoCh13G006300 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-67
Identity = 114/144 (79.17%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 38  SRYESQKKRDWNTFGQYLKNQTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQ 97
           SRYESQK+RDWNTFGQYLKNQ PPV +S C+CNHV++F+RYLDQFGKTKVH+ GC+F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 98  PDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKA 157
           P+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPF +GAIRVYLREV+ECQAKA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 158 RGIPYKKKKRKR--SQLKGNEEDN 180
           RGIPYKKKK+K+   ++ G  ED+
Sbjct: 144 RGIPYKKKKKKKPTPEMGGGREDS 167

[Close]

BLAST of CmoCh13G006300 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-67
Identity = 114/144 (79.17%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 38  SRYESQKKRDWNTFGQYLKNQTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQ 97
           SRYESQK+RDWNTFGQYLKNQ PPV +S C+CNHV++F+RYLDQFGKTKVH+ GC+F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 98  PDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKA 157
           P+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPF +GAIRVYLREV+ECQAKA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 158 RGIPYKKKKRKR--SQLKGNEEDN 180
           RGIPYKKKK+K+   ++ G  ED+
Sbjct: 144 RGIPYKKKKKKKPTPEMGGGREDS 167

[Close]

BLAST of CmoCh13G006300 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 229.2 bits (583), Expect = 2.7e-60
Identity = 106/141 (75.18%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 32  QTSAALSRYESQKKRDWNTFGQYLKNQTPPVALSQCNCNHVVEFMRYLDQFGKTKVHLHG 91
           Q    LSRYESQK+RDWNTF QYLK+Q PP+ +SQ +  HV+ F+RYLDQFGKTKVH   
Sbjct: 30  QPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQA 89

Query: 92  CVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH-GGSPETNPFGNGAIRVYLREV 151
           CVFFGQPDPP PCTCPL+QAWGSLDALIGRLRAAYEEH GGSP+TNPF NG+IRV+LREV
Sbjct: 90  CVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREV 149

Query: 152 KECQAKARGIPYKKKKRKRSQ 172
           +E QAKARGIPY+KKKR++++
Sbjct: 150 RESQAKARGIPYRKKKRRKTK 170

[Close]

BLAST of CmoCh13G006300 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 224.2 bits (570), Expect = 8.8e-59
Identity = 106/156 (67.95%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 14  SSSRTAAGSSAAADQQQQQTSAALSRYESQKKRDWNTFGQYLKNQTPPVALSQCNCNHVV 73
           +++ T   SS+++       +  LSRYE+QK+RDWNTFGQYL+N  PP++LS+C+  HV+
Sbjct: 23  AAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVL 82

Query: 74  EFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSP 133
           EF+RYLDQFGKTKVH H C FFG P+PPAPC CPLRQAWGSLDALIGRLRAA+EE+GGSP
Sbjct: 83  EFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSP 142

Query: 134 ETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR 170
           ETNPFG  A+R+YLREV++ QAKARGI Y+KKKRKR
Sbjct: 143 ETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of CmoCh13G006300 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-57
Identity = 107/171 (62.57%), Postives = 132/171 (77.19%), Query Frame = 0


Query: 19  AAGSSAAADQQQQQ--------TSAALSRYESQKKRDWNTFGQYLKNQTPPVALSQCNCN 78
           A GSS    Q Q Q           ALSRYESQK+RDWNTF QYL+NQ PPV +SQC  N
Sbjct: 12  AEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSN 71

Query: 79  HVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 138
           H+++F++YLDQFGKTKVH+HGCVFFGQ +P   C CPL+QAWGSLDALIGRLRAA+EE+G
Sbjct: 72  HILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENG 131

Query: 139 GSPETNPFGNGAIRVYLREVKECQAKARGIPYK--KKKRKRSQLKGNEEDN 180
           G PE NPF  G IRV+LREV++ QAKARG+PYK  KK++KR+ +K ++ ++
Sbjct: 132 GLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGED 182

The following BLAST results are available for this feature:

BLAST of CmoCh13G006300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	1.9e-66	79.17	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9SN52	3.9e-59	75.18	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XED8	1.5e-58	68.29	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	1.5e-58	68.29	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q9LW68	1.2e-57	67.95	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of CmoCh13G006300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJZ8	2.1e-100	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1KGX1	2.4e-96	97.30	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A1S4E614	1.3e-81	85.39	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7UU18	1.3e-81	85.39	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0M097	6.4e-81	84.83	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G474480 PE=3 S...	[more]

BLAST of CmoCh13G006300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927073.1	4.3e-100	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]
KAG6583960.1	2.4e-98	97.88	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
KAG7019578.1	3.1e-98	97.37	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_023000826.1	5.0e-96	97.30	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima]	[more]
XP_023519392.1	8.5e-96	96.28	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh13G006300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	1.4e-67	79.17	Protein of unknown function (DUF640)	[more]
AT2G42610.2	1.4e-67	79.17	Protein of unknown function (DUF640)	[more]
AT4G18610.1	2.7e-60	75.18	Protein of unknown function (DUF640)	[more]
AT3G23290.2	8.8e-59	67.95	Protein of unknown function (DUF640)	[more]
AT1G78815.1	1.3e-57	62.57	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 29..152 e-value: 1.6E-63 score: 212.5
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 39..166 score: 76.757973
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 2..179
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 2..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G006300.1	CmoCh13G006300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus