CmoCh13G006030 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G006030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	floral homeotic protein AGAMOUS-like isoform X1
Location	Cmo_Chr13: 6643962 .. 6644156 (-)
RNA-Seq Expression	CmoCh13G006030
Synteny	CmoCh13G006030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAAGAGAACAAAACAGAAGTGGAAATAACAGCATAGGTGCAAGAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGATGTGTGGGTCCAAATTTAGAGGGTAATGAGCAATACTACTTTCCCCATCAAAATCACCATATCTCCCTGCAACTCATCTAA

mRNA sequence

ATGGAGAGAAGAGAACAAAACAGAAGTGGAAATAACAGCATAGGTGCAAGAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGATGTGTGGGTCCAAATTTAGAGGGTAATGAGCAATACTACTTTCCCCATCAAAATCACCATATCTCCCTGCAACTCATCTAA

Coding sequence (CDS)

ATGGAGAGAAGAGAACAAAACAGAAGTGGAAATAACAGCATAGGTGCAAGAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGATGTGTGGGTCCAAATTTAGAGGGTAATGAGCAATACTACTTTCCCCATCAAAATCACCATATCTCCCTGCAACTCATCTAA

Protein sequence

MERREQNRSGNNSIGARGEGEGEGEGEGEGEGEGEGEGCVGPNLEGNEQYYFPHQNHHISLQLI

Homology

[Close]

BLAST of CmoCh13G006030 vs. ExPASy TrEMBL
Match: A0A6J1EI26 (floral homeotic protein AGAMOUS-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434283 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.0e-17
Identity = 52/64 (81.25%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1   MERREQNRSGNNSIGARGEGEGEGEGEGEGEGEGEGEGCVGPNLEGNEQYYFPHQNHHIS 60
           MERREQNRSGNNSIGAR            GEGEGEGEGCVGPNLEGNEQYYFPHQNHHIS
Sbjct: 200 MERREQNRSGNNSIGAR------------GEGEGEGEGCVGPNLEGNEQYYFPHQNHHIS 251

Query: 61  LQLI 65
           LQLI
Sbjct: 260 LQLI 251

[Close]

BLAST of CmoCh13G006030 vs. ExPASy TrEMBL
Match: A0A6J1EP10 (floral homeotic protein AGAMOUS-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434283 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.5e-16
Identity = 50/64 (78.12%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1   MERREQNRSGNNSIGARGEGEGEGEGEGEGEGEGEGEGCVGPNLEGNEQYYFPHQNHHIS 60
           MERREQNRSGNNSIGAR              GEGEGEGCVGPNLEGNEQYYFPHQNHHIS
Sbjct: 200 MERREQNRSGNNSIGAR--------------GEGEGEGCVGPNLEGNEQYYFPHQNHHIS 249

Query: 61  LQLI 65
           LQLI
Sbjct: 260 LQLI 249

[Close]

BLAST of CmoCh13G006030 vs. ExPASy TrEMBL
Match: A0A6J1KMT2 (floral homeotic protein AGAMOUS-like OS=Cucurbita maxima OX=3661 GN=LOC111495587 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.6e-13
Identity = 46/63 (73.02%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 2   ERREQNRSGNNSIGARGEGEGEGEGEGEGEGEGEGEGCVGPNLEGNEQYYFPHQNHHISL 61
           ER +QNRSGNNSIGARG             G GEGEGCVGPNLEGN+QYYFPHQNHHISL
Sbjct: 199 ERIQQNRSGNNSIGARG-------------GGGEGEGCVGPNLEGNQQYYFPHQNHHISL 248

Query: 62  QLI 65
           QLI
Sbjct: 259 QLI 248

[Close]

BLAST of CmoCh13G006030 vs. NCBI nr
Match: KAG6583935.1 (Floral homeotic protein AGAMOUS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.7 bits (291), Expect = 7.4e-23
Identity = 64/69 (92.75%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1   MERREQNRSGNNSIGAR-----GEGEGEGEGEGEGEGEGEGEGCVGPNLEGNEQYYFPHQ 60
           MERREQNRSGNNSIGAR     GEGEGEGEGEGEGEGEGEGEGCVGPNLEGNEQYYFPHQ
Sbjct: 202 MERREQNRSGNNSIGARGEEGEGEGEGEGEGEGEGEGEGEGEGCVGPNLEGNEQYYFPHQ 261

Query: 61  NHHISLQLI 65
           NHHISLQLI
Sbjct: 262 NHHISLQLI 270

[Close]

BLAST of CmoCh13G006030 vs. NCBI nr
Match: XP_022927464.1 (floral homeotic protein AGAMOUS-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 52/64 (81.25%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1   MERREQNRSGNNSIGARGEGEGEGEGEGEGEGEGEGEGCVGPNLEGNEQYYFPHQNHHIS 60
           MERREQNRSGNNSIGAR            GEGEGEGEGCVGPNLEGNEQYYFPHQNHHIS
Sbjct: 200 MERREQNRSGNNSIGAR------------GEGEGEGEGCVGPNLEGNEQYYFPHQNHHIS 251

Query: 61  LQLI 65
           LQLI
Sbjct: 260 LQLI 251

[Close]

BLAST of CmoCh13G006030 vs. NCBI nr
Match: XP_022927465.1 (floral homeotic protein AGAMOUS-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 50/64 (78.12%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1   MERREQNRSGNNSIGARGEGEGEGEGEGEGEGEGEGEGCVGPNLEGNEQYYFPHQNHHIS 60
           MERREQNRSGNNSIGAR              GEGEGEGCVGPNLEGNEQYYFPHQNHHIS
Sbjct: 200 MERREQNRSGNNSIGAR--------------GEGEGEGCVGPNLEGNEQYYFPHQNHHIS 249

Query: 61  LQLI 65
           LQLI
Sbjct: 260 LQLI 249

[Close]

BLAST of CmoCh13G006030 vs. NCBI nr
Match: XP_023519255.1 (floral homeotic protein AGAMOUS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.1 bits (222), Expect = 7.4e-15
Identity = 49/63 (77.78%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 2   ERREQNRSGNNSIGARGEGEGEGEGEGEGEGEGEGEGCVGPNLEGNEQYYFPHQNHHISL 61
           ERR+QNRSGNNSIGAR            G GEGEGEGCVGPNLEGNEQYYFPHQNHHISL
Sbjct: 201 ERRQQNRSGNNSIGAR------------GGGEGEGEGCVGPNLEGNEQYYFPHQNHHISL 251

Query: 62  QLI 65
           QLI
Sbjct: 261 QLI 251

[Close]

BLAST of CmoCh13G006030 vs. NCBI nr
Match: XP_023001459.1 (floral homeotic protein AGAMOUS-like [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 46/63 (73.02%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 2   ERREQNRSGNNSIGARGEGEGEGEGEGEGEGEGEGEGCVGPNLEGNEQYYFPHQNHHISL 61
           ER +QNRSGNNSIGARG             G GEGEGCVGPNLEGN+QYYFPHQNHHISL
Sbjct: 199 ERIQQNRSGNNSIGARG-------------GGGEGEGCVGPNLEGNQQYYFPHQNHHISL 248

Query: 62  QLI 65
           QLI
Sbjct: 259 QLI 248

The following BLAST results are available for this feature:

BLAST of CmoCh13G006030 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G006030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EI26	5.0e-17	81.25	floral homeotic protein AGAMOUS-like isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EP10	5.5e-16	78.13	floral homeotic protein AGAMOUS-like isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KMT2	2.6e-13	73.02	floral homeotic protein AGAMOUS-like OS=Cucurbita maxima OX=3661 GN=LOC111495587...	[more]

BLAST of CmoCh13G006030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583935.1	7.4e-23	92.75	Floral homeotic protein AGAMOUS, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022927464.1	1.0e-16	81.25	floral homeotic protein AGAMOUS-like isoform X1 [Cucurbita moschata]	[more]
XP_022927465.1	1.1e-15	78.13	floral homeotic protein AGAMOUS-like isoform X2 [Cucurbita moschata]	[more]
XP_023519255.1	7.4e-15	77.78	floral homeotic protein AGAMOUS-like [Cucurbita pepo subsp. pepo]	[more]
XP_023001459.1	5.3e-13	73.02	floral homeotic protein AGAMOUS-like [Cucurbita maxima]	[more]

BLAST of CmoCh13G006030 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G006030.1	CmoCh13G006030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding