CmoCh13G005530 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G005530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Small nuclear ribonucleoprotein-associated protein B
Location	Cmo_Chr13: 6368176 .. 6368490 (+)
RNA-Seq Expression	CmoCh13G005530
Synteny	CmoCh13G005530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAGGTTGGTTGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

mRNA sequence

ATGGTTCAGGTTGGTTGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

Coding sequence (CDS)

ATGGTTCAGGTTGGTTGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

Protein sequence

MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV

Homology

[Close]

BLAST of CmoCh13G005530 vs. ExPASy Swiss-Prot
Match: Q6GQ67 (N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-a PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 34/96 (35.42%), Postives = 47/96 (48.96%), Query Frame = 0


Query: 5   GCNVESNPDSLDRVG--------KVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQD 64
           GC+ +S+P + D           K+  LL R M I + DGR  +G F C D+  N+IL  
Sbjct: 9   GCSRQSSPSAGDSDAEPGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGS 68

Query: 65  AVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD 93
           A E+     S P   E R LGL ++P    VS  V+
Sbjct: 69  AQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of CmoCh13G005530 vs. ExPASy Swiss-Prot
Match: A4IGZ4 (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 0


Query: 5   GCNVESNP---DSLDRVG-----KVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQD 64
           GC+ +S+P   DS    G     K+  LL R M I + DGR  +G F C D+  N+IL  
Sbjct: 9   GCSRQSSPGAGDSDAEAGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGS 68

Query: 65  AVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD 93
           A E+     S P   E R LGL ++P    VS  V+
Sbjct: 69  AQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of CmoCh13G005530 vs. ExPASy Swiss-Prot
Match: Q55A45 (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-06
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 15  LDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQ- 74
           + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ 
Sbjct: 4   MPKSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEK 63

Query: 75  RCLGLILIPNSCRVSCHVDSTIDEQLAL 102
           R LG+ILI     VS  V++   E+  L
Sbjct: 64  RTLGMILIRGETVVSMSVEAPPPEEAKL 91

[Close]

BLAST of CmoCh13G005530 vs. ExPASy Swiss-Prot
Match: Q17QN3 (Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.1e-05
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 18 VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPM 77
          VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   
Sbjct: 3  VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 78 EQRCLGLILIPNSCRVSCHVD 93
          E+R LGL+L+     VS  V+
Sbjct: 63 EKRVLGLVLLRGENLVSMTVE 83

[Close]

BLAST of CmoCh13G005530 vs. ExPASy Swiss-Prot
Match: P63162 (Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=SNRPN PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.1e-05
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 18 VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPM 77
          VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   
Sbjct: 3  VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 78 EQRCLGLILIPNSCRVSCHVD 93
          E+R LGL+L+     VS  V+
Sbjct: 63 EKRVLGLVLLRGENLVSMTVE 83

[Close]

BLAST of CmoCh13G005530 vs. ExPASy TrEMBL
Match: A0A6J1EKG3 (uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC111434149 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.0e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 60
           MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY
Sbjct: 9   MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 68

Query: 61  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 105
           RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 69  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CmoCh13G005530 vs. ExPASy TrEMBL
Match: A0A6J1KMW6 (uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.3e-50
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 60
           MVQVG NVESNPDSLDRVGKVRKLLFRRML+GIKDGRFFLGSFYCMDKQGNIILQDAVEY
Sbjct: 9   MVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNIILQDAVEY 68

Query: 61  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 105
           RST RSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 69  RSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CmoCh13G005530 vs. ExPASy TrEMBL
Match: A0A0A0LSZ5 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 60
           MVQ G NVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEY
Sbjct: 9   MVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEY 68

Query: 61  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 105
           RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 69  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CmoCh13G005530 vs. ExPASy TrEMBL
Match: A0A5D3DAS2 (Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00700 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.3e-46
Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 60
           MVQ G N ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEY
Sbjct: 9   MVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEY 68

Query: 61  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 105
           RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 69  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CmoCh13G005530 vs. ExPASy TrEMBL
Match: A0A1S3BAH4 (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.3e-46
Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 60
           MVQ G N ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEY
Sbjct: 9   MVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEY 68

Query: 61  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 105
           RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 69  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CmoCh13G005530 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata])

HSP 1 Score: 214.5 bits (545), Expect = 4.2e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 60
           MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY
Sbjct: 9   MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 68

Query: 61  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 105
           RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 69  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CmoCh13G005530 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 Small nuclear ribonucleoprotein-associated protein B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.7 bits (535), Expect = 6.1e-51
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 60
           MVQVG NVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY
Sbjct: 9   MVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 68

Query: 61  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 105
           RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 69  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CmoCh13G005530 vs. NCBI nr
Match: XP_023001494.1 (uncharacterized protein LOC111495614 [Cucurbita maxima])

HSP 1 Score: 206.8 bits (525), Expect = 8.8e-50
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 60
           MVQVG NVESNPDSLDRVGKVRKLLFRRML+GIKDGRFFLGSFYCMDKQGNIILQDAVEY
Sbjct: 9   MVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNIILQDAVEY 68

Query: 61  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 105
           RST RSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 69  RSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CmoCh13G005530 vs. NCBI nr
Match: XP_011649337.1 (uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_014187 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 60
           MVQ G NVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEY
Sbjct: 9   MVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEY 68

Query: 61  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 105
           RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 69  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CmoCh13G005530 vs. NCBI nr
Match: XP_038893823.1 (uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893824.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893825.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893826.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893827.1 uncharacterized protein LOC120082644 [Benincasa hispida])

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-47
Identity = 96/104 (92.31%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEY 60
           MVQ G NVESNP+SLDRVGKVR+LLFRRMLIGIKDGRFFLGSFYC+DKQGNIILQDAVEY
Sbjct: 9   MVQDGSNVESNPESLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNIILQDAVEY 68

Query: 61  RSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 105
           RSTR SSPSPMEQRCLGLILIPNSCRVSCH+DSTIDE+LALLSV
Sbjct: 69  RSTRHSSPSPMEQRCLGLILIPNSCRVSCHIDSTIDEKLALLSV 112

[Close]

BLAST of CmoCh13G005530 vs. TAIR 10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 151.8 bits (382), Expect = 3.1e-37
Identity = 68/95 (71.58%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 10  SNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPS 69
           S     D + ++RKLLFR+ML+GIKDGRFFLG+F+C+DKQGNIILQD VEYRS RRSSPS
Sbjct: 16  SEGSDFDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPS 75

Query: 70  PMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 105
           P EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Sbjct: 76  PTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110

[Close]

BLAST of CmoCh13G005530 vs. TAIR 10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.9e-05
Identity = 24/85 (28.24%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 14 SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYR------STRRSS 73
          S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R        ++++
Sbjct: 2  SMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTN 61

Query: 74 PSPMEQRCLGLILIPNSCRVSCHVD 93
              E+R LGL+L+     +S  V+
Sbjct: 62 EEREERRTLGLVLLRGEEVISMTVE 86

[Close]

BLAST of CmoCh13G005530 vs. TAIR 10
Match: AT4G20440.2 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 23/84 (27.38%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 14 SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRST-----RRSSP 73
          S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ + 
Sbjct: 2  SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINE 61

Query: 74 SPMEQRCLGLILIPNSCRVSCHVD 93
             ++R LGL+L+     +S  V+
Sbjct: 62 EREDRRTLGLVLLRGEEVISMTVE 85

[Close]

BLAST of CmoCh13G005530 vs. TAIR 10
Match: AT4G20440.3 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 23/84 (27.38%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 14 SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRST-----RRSSP 73
          S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ + 
Sbjct: 2  SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINE 61

Query: 74 SPMEQRCLGLILIPNSCRVSCHVD 93
             ++R LGL+L+     +S  V+
Sbjct: 62 EREDRRTLGLVLLRGEEVISMTVE 85

The following BLAST results are available for this feature:

BLAST of CmoCh13G005530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6GQ67	1.2e-06	35.42	N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]
A4IGZ4	1.2e-06	37.50	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=83...	[more]
Q55A45	3.6e-06	32.95	Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum...	[more]
Q17QN3	3.1e-05	38.27	Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SN...	[more]
P63162	3.1e-05	38.27	Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=...	[more]

BLAST of CmoCh13G005530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EKG3	2.0e-52	100.00	uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC1114341...	[more]
A0A6J1KMW6	4.3e-50	97.12	uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614...	[more]
A0A0A0LSZ5	1.8e-48	93.27	Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=...	[more]
A0A5D3DAS2	1.3e-46	91.35	Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. ma...	[more]
A0A1S3BAH4	1.3e-46	91.35	uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=...	[more]

BLAST of CmoCh13G005530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927243.1	4.2e-52	100.00	uncharacterized protein LOC111434149 [Cucurbita moschata]	[more]
XP_023520042.1	6.1e-51	99.04	uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 ...	[more]
XP_023001494.1	8.8e-50	97.12	uncharacterized protein LOC111495614 [Cucurbita maxima]	[more]
XP_011649337.1	3.7e-48	93.27	uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical ...	[more]
XP_038893823.1	1.1e-47	92.31	uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893824.1 unchara...	[more]

BLAST of CmoCh13G005530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18372.1	3.1e-37	71.58	Small nuclear ribonucleoprotein family protein	[more]
AT5G44500.1	1.9e-05	28.24	Small nuclear ribonucleoprotein family protein	[more]
AT4G20440.2	1.2e-04	27.38	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.3	1.2e-04	27.38	small nuclear ribonucleoprotein associated protein B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.100		coord: 19..96 e-value: 3.2E-17 score: 64.0
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 13..103
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 22..81 e-value: 2.4E-7 score: 30.3
IPR034110	LSM domain containing 1	PANTHER	PTHR10701:SF5	FI06540P	coord: 13..103
IPR034110	LSM domain containing 1	CDD	cd06168	LSMD1	coord: 20..92 e-value: 3.22917E-25 score: 87.9977
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 18..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G005530.1	CmoCh13G005530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031417	NatC complex