CmoCh13G004840 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G004840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr13: 5845906 .. 5846711 (-)
RNA-Seq ExpressionCmoCh13G004840
SyntenyCmoCh13G004840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATCTAAAATTAATGATTTTATTTTTATAATTTAATTTAAACTTTTAAAAGAATATCTTTGACTTAACCCAATAAAGGACGAGAAAGAATATAATTTACTAAACAAATACAATTAAATGATTCTATAAAAAATAATAATGTTAAATTATACTTTAAATTTTATATTTATTTGATATATTTTACGTCTAATAAATTTCTAAAATTAATTGATAAATTATACAAAAAGGTCTAATTTTTTAAAATTTTATTTTAGTTCATCTATTAAAAAAAAATACTAAATTGGAGAATCAAATTTTTAATTTTGAAAAATGAAAGAAAAAATTAATATATATGTATATATGTATATATGTATATATGTATATATGTATATATGTATATATATATATGTTGAGTTGGAATCTGGAAGTCACATTTGAGCACGTTTCACATTTTTCTCAACAGTCTCTCAGTGTTTGCGTTTGCCCAAATCTCTCATAAATCAGTTTGCACGGTCGCGTGCCAGCTTCCGTCGAACCCCCTCCCTAGGGCACAACAACAGCGATACTCCACCACCCCTCAAATTCATGCTCCTCCGTGTTCTTCCTCTCAATCTCTCTCTCTTTCTCTCGCCGATTCAAGCTCTCCATTAGTAACTTGCTCTCACACTCACGGTATTGTATGTGTAAGTTTTTCTGTAATCCCCTAGTTTTTTGAACTTCTCGTCGCCCTCTCATGTCGGTTTTTGAGTTTCTGTCTGCCTCCCCTCGTTCTCGCTAATGGAATTGCTCTACTATTTGGCAGGGTAGGATTCGCGGATTCTGA

mRNA sequence

ATGGTTTGCACGGTCGCGTGCCAGCTTCCGTCGAACCCCCTCCCTAGGGCACAACAACAGCGATACTCCACCACCCCTCAAATTCATGCTCCTCCGTGTTCTTCCTCTCAATCTCTCTCTCTTTCTCTCGCCGATTCAAGCTCTCCATTAGTAACTTGCTCTCACACTCACGGTATTGTATGTGGTAGGATTCGCGGATTCTGA

Coding sequence (CDS)

ATGGTTTGCACGGTCGCGTGCCAGCTTCCGTCGAACCCCCTCCCTAGGGCACAACAACAGCGATACTCCACCACCCCTCAAATTCATGCTCCTCCGTGTTCTTCCTCTCAATCTCTCTCTCTTTCTCTCGCCGATTCAAGCTCTCCATTAGTAACTTGCTCTCACACTCACGGTATTGTATGTGGTAGGATTCGCGGATTCTGA

Protein sequence

MVCTVACQLPSNPLPRAQQQRYSTTPQIHAPPCSSSQSLSLSLADSSSPLVTCSHTHGIVCGRIRGF
Homology
[Close]
BLAST of CmoCh13G004840 vs. NCBI nr
Match: KAG7019439.1 (hypothetical protein SDJN02_18400, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 2  VCTVACQLPSNPLPRAQQQRYSTTPQIHAPPCSSSQSLSLSLADSSSPLVTCSHTHGIVC 61
          VCTVACQLPSNPLPRAQQQRYSTTPQIHAPPCSSSQSLSLSLADSSSPLVTCSHTHGIVC
Sbjct: 20 VCTVACQLPSNPLPRAQQQRYSTTPQIHAPPCSSSQSLSLSLADSSSPLVTCSHTHGIVC 79

Query: 62 GRIRGF 68
          GRIRGF
Sbjct: 80 GRIRGF 85

[Close]
BLAST of CmoCh13G004840 vs. NCBI nr
Match: KAG6583814.1 (Vacuolar sorting protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0 

Query: 9    LPSNPLPRAQQQRYSTTPQIHAPPCSSSQSLSLSLADSSSPLVTCSHTHGIVCGRIRGF 68
            LPSNPLPRAQQQRYSTTPQIHAPPCSS QSLSLSLADSSSPLVTCSHTHGIVCGRIRGF
Sbjct: 1010 LPSNPLPRAQQQRYSTTPQIHAPPCSSCQSLSLSLADSSSPLVTCSHTHGIVCGRIRGF 1068

The following BLAST results are available for this feature:
BLAST of CmoCh13G004840 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G004840 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G004840 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019439.11.6e-28100.00hypothetical protein SDJN02_18400, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6583814.12.0e-2398.31Vacuolar sorting protein 3, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmoCh13G004840 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G004840.1CmoCh13G004840.1mRNA