![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CmoCh13G004750 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGGAAATGCAAAGGAAATAAATTTAATTTTCAATCGCTGTCGTGCGTAATCGAGTTGTTCTTGTTATTGTTCATCTTGAGGGGGGAAAGGAGAGAGCGTGTTTTGCTTCCAAGAGAGAGATAGGCATCTGTCTTGATTGTTTTGATTTCCTTTTTCGCCATTCTTAACCCTTTTTGTTCTGTCAACGCCTGTTCTTCCACGATTCTCTTCGATTTTTGTCTCGATTGCGGTTTACGGCCATGGCCACCAGCGGAAACAAGAACATTAATGCCAAATTAGTGAGACTTTTCTCCCCTTTTTGATTCTTAAAGTTTGATTTCTTTTTTCTGTCCGGATTTTGATGCCGAATCGCGATGTGGGTCTCTTTGATTTTCCTTTTCCGGAATTGGGTTTTCATTATTGTTCTTCTTTTCATCGTCAATTCGATTTGGTTTAATCCTTGGTAGTCTTGATTTGTGTCTGAATTCTGATTAGGGTTTTGTTTTGTTCGCGAATATCCGAATTTTTTTCTGGTTTGATTGTATTTCTGTTGGTTGTAATTATGAAATCTCTGTTTGCATTCTCTATATATCATTAACTTTTGATGATTGTTGGGATAATCCCTTTCCAATTTATAATTCGGTCGTGATCTAAGTTAATTCTCTGCATTTTAATTAGCAGATAGTTCAGTAGGATCGTGATTATTGCCCTTAGTTTCAGCACTCAATTGTATTAGACGGTATCCCTTTTTGTTTTTCGAGATTTTTTTACATGCTCTTCCCCTCTTTGTCCAATTCTGATATTAAATCATACCTCATATTATGCTTGCCCCTGTTTTTACTATCCAATTGTCTCACTTCAATGGCTATCATACATGGAATGTTATTTGTTGAAAAAGGAAGGGGCTGGATGGACTATGTTTAGCTACAACTATTTTGGAACAACACATATGAAATCCAGTTTATTTCACTTCGTTTTTCGCTCAGGTGCTTCTTGGTGATGTTGGTGCTGGGAAGTCGAGTCTAGTGTTGCGTTTTGTTAAAGGGCAATTTGTTGAGTTTCAGGTTTGTATTATAAACCATTTGGATTTGGCTGTTGAAATTTTTGAAATGTCTTTCTGTCTTGGTCGTATGTAATCTTTTTAATTGTTCAATTATGTAGGAATCAACGATCGGTGCAGCCTTTTTCTCTCAAACATTGGCTGTAAATGATGCCACTGTGAAATTTGAAATCTGGGACACAGCTGGGCAGGAGAGATACCACAGTTTGGCTCCAATGTATTACAGGGGTGCAGCTGCAGCTATTATCGTCTACGATATTACTAACCAAGTAAGTGGCGTTTTGAAAACTCTTGATGGGTTGCATATGGTCTGAGAACAAAATAATTGTAATTGTGCTTGGGCATTACATCTTCAAATTCGTTGTACAAGCCATCAGCCATTTCCGTGAAATATGTTTGGGATGAAAGAAGTGTGTTATTATATGTCTATGAATTAAGTACCAACCATTTTGTCTTTATAATTAATTGCTAAAAGAACTTAGAAGTTGTAACGGCCCAAGTCCACCACTAGCCTATATTGTCCTCTTTGGGCTTTTCCTTTTGAGTTTCTCCTCGAGGTTTTTAAAACGCGTCTGCCAGGGAGAGGTTTCCACACCTTTATAAAGAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCTTCGGGGCCCAGCGTCCTCGTTGGCACTCGTTCCCTTCTCTAATCGATGTGGGACCTCCAATCCACCCCCTTTGAGGCCCAGCGTCCTTGCTGGCACACCGCCTCTAGTCCACTCCCTCCGGGGCTCAGCCTTTTCGTTGGCACATCGCTCGTTGTCTGGCTCTGATACCATTTGTAACTGGCCAAGCCCACCGCTAGCGGATAGTATTCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTTAAGATTTTTAAAACGCTAGCAGAGTGGTTTCTACATCCTTATAAAAAATGCTTTGTTCTCCCCACAACCGACTTGAAATTTCACTGAAGTTTTTTTTCATTTTTAATTATTTAAAAAAAAATTGATGGGAGCTAACAAAATCTTTGAAATTCACCTACAGGTATTGACTTTAGATAAGGAAACTTCAACAGAATTGACGTTTTGAACTTTTAACCAAGTGGGGGCTTTTGTGAAGTTATTAAGAGGCTTAGAGATTAATAAATCATTTCATAGTGGTGCTTGATAAAGGAAACTGTGATGGGTTTGTATATGACCTGAAGTGGGATTCTGTGTGTGTGTTTTAGAGCGGGGAGCTAGGAGTAACGCTTTTTTAGGAGTTCTTACCCTTCTGAAAAGCGACATACTCTATACATATCAGGCTTCACTAGGGATTGATTATTCATCCTTTTATATACTACTGTAATCGAATTACAATTTTTATTCCTTTTCATACCTCAACTCTTTTGTGTAACCTCTATTTGATTGTAGGCTTCATTTGATCGGGCAAAAAAATGGGTTCAAGAACTTCAAGCACAAGGTAGTCTTACTTTTAAGTGGCCTAAATTTACATTGGAAGAGCATCTGGATTGAGCATTCTGTGAACTTTTAGCAAGTGAAATTAGTGTGGCAGCTGTCTACCTTATTCTTTTTACCAATTTGATCGTCTCCTTTTATCAGGCAATCCGAATATGGTCATGGCTTTAGCTGGGAATAAATCAGATATGTTGGATTCTAGGAGTGTTGCTGCAGAGGCAAGTACTCCCAACCTCAGTTTTCTTTATTCTGTAGTACTTTGTTGAACTGGGATGCATTTCATACAACTAAAAAAGTATATTTCTCTAGTGACGATCTTCTCTAGTTGGAATTTTGTGATATTTTTGTACTAAGCTGTGACAATTGGTTCAATTGTTGCTCGTGTAATTGTGCATCGTACAGGACGCTCAAACGTATGCGCAGGAGAATGGCCTTTTCTTCATGGAAACCTCTGCAAAAAGTGCTGCTAATGTCAATGATATCTTCTATGAAATAGGTTAGTAACTAGGACCTATGAGTTCAAGGGACCGCCCCCGCCCCCGCCCCCGCCCCCCACCCCCCTACCGAAATAAAAGAGCTGAAACAAGATTTCTCTTTTATGCTTACGATATCTCTGGATCGTAGACTTAAGGAATTTGAGTTTATGGAGCCTGAGTGTTCTAAATTTGTATTTGAGGGGATGGTGCAAAACATGAGTTATAGAAACCGTGGTTCGGTGTCATATTTGTTTGATCAATGGGGATATCCAACACGAGTTTCATGAGTTTGGGTTCATTAAGTCGCGATAGCAAACCCGTAGCTTGGGACAAGTAAATTTATATTAAGTAGATTCATCTTCTTTATCTGGAGGTTCACAAAGTTAGAGAAGTCCCTGCCCTTGACCCCACTCCCAACCACACACACACACAACACACACACAAAAAGGTTCACAAAGTTGATTTTGATTCCTTGTTTTTCGATGCAGCAAAGAGATTACCACGAGTGCAACCGGTACAGAATACACCAGGGATGGTTCTAGACAGACCTGCTGAAAGGGTTGCAAGCACGTCGTGTTGCTCGTAGAACGTCATTGTTCTACTCTTAAGGTGTCTGCAGAATGACCTCCATTTGTATGCAGAATTCTTAAGGAAAAGAAGAGAAAAAAAAAGGGTTGTTGATGTTGAATTTATTATGATGTGTAAATTGACTGCTGTGTTTAGATGATGTGCTTCTTTTGCAGCCACTATAAATGTGGCAGACTCGCTACTTTGTGTTTATATGATGACCTTCGGCTTGCTTCACACATGCACAGTTTTCTTGGCTTCTTTTTTCATTGGGGTAATCGGGATATCTACCAAAAAGTCATTTAAAATTCGTTTATTAAATGCTTGAAAAGCCATTTTTAATAGATTATGAAGCAAGTTTGATTTGACTCG AGGAAATGCAAAGGAAATAAATTTAATTTTCAATCGCTGTCGTGCGTAATCGAGTTGTTCTTGTTATTGTTCATCTTGAGGGGGGAAAGGAGAGAGCGTGTTTTGCTTCCAAGAGAGAGATAGGCATCTGTCTTGATTGTTTTGATTTCCTTTTTCGCCATTCTTAACCCTTTTTGTTCTGTCAACGCCTGTTCTTCCACGATTCTCTTCGATTTTTGTCTCGATTGCGGTTTACGGCCATGGCCACCAGCGGAAACAAGAACATTAATGCCAAATTAGTGCTTCTTGGTGATGTTGGTGCTGGGAAGTCGAGTCTAGTGTTGCGTTTTGTTAAAGGGCAATTTGTTGAGTTTCAGGAATCAACGATCGGTGCAGCCTTTTTCTCTCAAACATTGGCTGTAAATGATGCCACTGTGAAATTTGAAATCTGGGACACAGCTGGGCAGGAGAGATACCACAGTTTGGCTCCAATGTATTACAGGGGTGCAGCTGCAGCTATTATCGTCTACGATATTACTAACCAAGCTTCATTTGATCGGGCAAAAAAATGGGTTCAAGAACTTCAAGCACAAGGCAATCCGAATATGGTCATGGCTTTAGCTGGGAATAAATCAGATATGTTGGATTCTAGGAGTGTTGCTGCAGAGGCAAGTACTCCCAACCTCAGTTTTCTTTATTCTGTAGACGCTCAAACGTATGCGCAGGAGAATGGCCTTTTCTTCATGGAAACCTCTGCAAAAAGTGCTGCTAATGTCAATGATATCTTCTATGAAATAGCAAAGAGATTACCACGAGTGCAACCGGTACAGAATACACCAGGGATGGTTCTAGACAGACCTGCTGAAAGGGTTGCAAGCACGTCGTGTTGCTCGTAGAACGTCATTGTTCTACTCTTAAGGTGTCTGCAGAATGACCTCCATTTGTATGCAGAATTCTTAAGGAAAAGAAGAGAAAAAAAAAGGGTTGTTGATGTTGAATTTATTATGATGTGTAAATTGACTGCTGTGTTTAGATGATGTGCTTCTTTTGCAGCCACTATAAATGTGGCAGACTCGCTACTTTGTGTTTATATGATGACCTTCGGCTTGCTTCACACATGCACAGTTTTCTTGGCTTCTTTTTTCATTGGGGTAATCGGGATATCTACCAAAAAGTCATTTAAAATTCGTTTATTAAATGCTTGAAAAGCCATTTTTAATAGATTATGAAGCAAGTTTGATTTGACTCG ATGGCCACCAGCGGAAACAAGAACATTAATGCCAAATTAGTGCTTCTTGGTGATGTTGGTGCTGGGAAGTCGAGTCTAGTGTTGCGTTTTGTTAAAGGGCAATTTGTTGAGTTTCAGGAATCAACGATCGGTGCAGCCTTTTTCTCTCAAACATTGGCTGTAAATGATGCCACTGTGAAATTTGAAATCTGGGACACAGCTGGGCAGGAGAGATACCACAGTTTGGCTCCAATGTATTACAGGGGTGCAGCTGCAGCTATTATCGTCTACGATATTACTAACCAAGCTTCATTTGATCGGGCAAAAAAATGGGTTCAAGAACTTCAAGCACAAGGCAATCCGAATATGGTCATGGCTTTAGCTGGGAATAAATCAGATATGTTGGATTCTAGGAGTGTTGCTGCAGAGGCAAGTACTCCCAACCTCAGTTTTCTTTATTCTGTAGACGCTCAAACGTATGCGCAGGAGAATGGCCTTTTCTTCATGGAAACCTCTGCAAAAAGTGCTGCTAATGTCAATGATATCTTCTATGAAATAGCAAAGAGATTACCACGAGTGCAACCGGTACAGAATACACCAGGGATGGTTCTAGACAGACCTGCTGAAAGGGTTGCAAGCACGTCGTGTTGCTCGTAG MATSGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFDRAKKWVQELQAQGNPNMVMALAGNKSDMLDSRSVAAEASTPNLSFLYSVDAQTYAQENGLFFMETSAKSAANVNDIFYEIAKRLPRVQPVQNTPGMVLDRPAERVASTSCCS Homology
BLAST of CmoCh13G004750 vs. ExPASy Swiss-Prot
Match: Q9SN68 (Ras-related protein RABF2b OS=Arabidopsis thaliana OX=3702 GN=RABF2B PE=1 SV=1) HSP 1 Score: 331.6 bits (849), Expect = 6.3e-90 Identity = 172/212 (81.13%), Postives = 186/212 (87.74%), Query Frame = 0
BLAST of CmoCh13G004750 vs. ExPASy Swiss-Prot
Match: P31582 (Ras-related protein RABF2a OS=Arabidopsis thaliana OX=3702 GN=RABF2A PE=1 SV=1) HSP 1 Score: 325.5 bits (833), Expect = 4.5e-88 Identity = 170/212 (80.19%), Postives = 184/212 (86.79%), Query Frame = 0
BLAST of CmoCh13G004750 vs. ExPASy Swiss-Prot
Match: Q0ILQ6 (Ras-related protein Rab5A OS=Oryza sativa subsp. japonica OX=39947 GN=RAB5A PE=1 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 1.7e-82 Identity = 166/213 (77.93%), Postives = 182/213 (85.45%), Query Frame = 0
BLAST of CmoCh13G004750 vs. ExPASy Swiss-Prot
Match: P31583 (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia OX=4092 GN=RHN1 PE=2 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 1.7e-82 Identity = 161/212 (75.94%), Postives = 177/212 (83.49%), Query Frame = 0
BLAST of CmoCh13G004750 vs. ExPASy Swiss-Prot
Match: P29687 (Ras-related protein Rab5 OS=Nicotiana tabacum OX=4097 GN=RAB5 PE=2 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 9.1e-81 Identity = 156/212 (73.58%), Postives = 176/212 (83.02%), Query Frame = 0
BLAST of CmoCh13G004750 vs. ExPASy TrEMBL
Match: A0A6J1EHC6 (ras-related protein RABF2b-like OS=Cucurbita moschata OX=3662 GN=LOC111434185 PE=4 SV=1) HSP 1 Score: 380.6 bits (976), Expect = 4.4e-102 Identity = 199/211 (94.31%), Postives = 199/211 (94.31%), Query Frame = 0
BLAST of CmoCh13G004750 vs. ExPASy TrEMBL
Match: A0A6J1KP17 (ras-related protein RABF2b-like OS=Cucurbita maxima OX=3661 GN=LOC111495218 PE=4 SV=1) HSP 1 Score: 378.6 bits (971), Expect = 1.7e-101 Identity = 198/211 (93.84%), Postives = 198/211 (93.84%), Query Frame = 0
BLAST of CmoCh13G004750 vs. ExPASy TrEMBL
Match: A0A1S3C8W6 (ras-related protein RABF2b OS=Cucumis melo OX=3656 GN=LOC103498306 PE=4 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 3.1e-100 Identity = 195/211 (92.42%), Postives = 196/211 (92.89%), Query Frame = 0
BLAST of CmoCh13G004750 vs. ExPASy TrEMBL
Match: A0A6J1CLQ7 (ras-related protein RABF2b OS=Momordica charantia OX=3673 GN=LOC111012759 PE=4 SV=1) HSP 1 Score: 372.9 bits (956), Expect = 9.1e-100 Identity = 194/211 (91.94%), Postives = 195/211 (92.42%), Query Frame = 0
BLAST of CmoCh13G004750 vs. ExPASy TrEMBL
Match: A0A6J1GV53 (ras-related protein RABF2b OS=Cucurbita moschata OX=3662 GN=LOC111457198 PE=4 SV=1) HSP 1 Score: 371.3 bits (952), Expect = 2.6e-99 Identity = 193/211 (91.47%), Postives = 196/211 (92.89%), Query Frame = 0
BLAST of CmoCh13G004750 vs. NCBI nr
Match: KAG7019431.1 (Ras-related protein RABF2b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 389.0 bits (998), Expect = 2.5e-104 Identity = 207/224 (92.41%), Postives = 208/224 (92.86%), Query Frame = 0
BLAST of CmoCh13G004750 vs. NCBI nr
Match: XP_022927321.1 (ras-related protein RABF2b-like [Cucurbita moschata] >XP_023519554.1 ras-related protein RABF2b-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG6583806.1 Ras-related protein RABF2b, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 380.6 bits (976), Expect = 9.0e-102 Identity = 199/211 (94.31%), Postives = 199/211 (94.31%), Query Frame = 0
BLAST of CmoCh13G004750 vs. NCBI nr
Match: XP_023000928.1 (ras-related protein RABF2b-like [Cucurbita maxima]) HSP 1 Score: 378.6 bits (971), Expect = 3.4e-101 Identity = 198/211 (93.84%), Postives = 198/211 (93.84%), Query Frame = 0
BLAST of CmoCh13G004750 vs. NCBI nr
Match: KAG7012595.1 (Ras-related protein RABF2b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 377.5 bits (968), Expect = 7.6e-101 Identity = 196/211 (92.89%), Postives = 200/211 (94.79%), Query Frame = 0
BLAST of CmoCh13G004750 vs. NCBI nr
Match: XP_038895356.1 (ras-related protein RABF2b [Benincasa hispida]) HSP 1 Score: 375.9 bits (964), Expect = 2.2e-100 Identity = 196/211 (92.89%), Postives = 197/211 (93.36%), Query Frame = 0
BLAST of CmoCh13G004750 vs. TAIR 10
Match: AT4G19640.1 (Ras-related small GTP-binding family protein ) HSP 1 Score: 331.6 bits (849), Expect = 4.5e-91 Identity = 172/212 (81.13%), Postives = 186/212 (87.74%), Query Frame = 0
BLAST of CmoCh13G004750 vs. TAIR 10
Match: AT5G45130.1 (RAB homolog 1 ) HSP 1 Score: 325.5 bits (833), Expect = 3.2e-89 Identity = 170/212 (80.19%), Postives = 184/212 (86.79%), Query Frame = 0
BLAST of CmoCh13G004750 vs. TAIR 10
Match: AT3G54840.1 (Ras-related small GTP-binding family protein ) HSP 1 Score: 203.8 bits (517), Expect = 1.4e-52 Identity = 104/183 (56.83%), Postives = 133/183 (72.68%), Query Frame = 0
BLAST of CmoCh13G004750 vs. TAIR 10
Match: AT3G54840.2 (Ras-related small GTP-binding family protein ) HSP 1 Score: 189.9 bits (481), Expect = 2.1e-48 Identity = 96/171 (56.14%), Postives = 125/171 (73.10%), Query Frame = 0
BLAST of CmoCh13G004750 vs. TAIR 10
Match: AT1G16920.1 (RAB GTPase homolog A1B ) HSP 1 Score: 151.8 bits (382), Expect = 6.3e-37 Identity = 77/175 (44.00%), Postives = 112/175 (64.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|