CmoCh13G004630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G004630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ribonuclease H2 subunit C
Location	Cmo_Chr13: 5676979 .. 5680200 (-)
RNA-Seq Expression	CmoCh13G004630
Synteny	CmoCh13G004630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGGAAAATCTTGGTCACTAATCGATTCTTAGGGCTCAAAAAAGCGGGAAGAAATGGTCAGTTGAATTTCCTCTCTCGAAATCCGAAGCATCGACGTGGGTTTAAGGTTTTTGAATTTAGGGTTTCTTCACAATTGATCAAATGGATTCTGAAAAGGAGAGGAAAAGGGAAGTAATCGTGGATTTTGATTTTGGGAGCGATTCTGGAGCTGTCGATCTCAGCGGTAAAGTCCATCAGCTTCCGTGTGCCGTTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCTAAATCCACTGGTAATGCACTACTTTTCGCTGTTTCTCCTTGTCCGTTTCATACTGAATAGTCTCTTTTTCATTCTTCTTTTCTTTCTATTCAAGGTATTGAGGTTGATGGTTTGAGCGTTGAGAATGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCGGAAGGCTACTCTGGTAACATAAAATGCTTTCAGTTCTGAGTTCATTGAAAAGTGCATATTGTTTGTTGTGTGATCCCAAGTTGGTTGGAGAGAGGAACAGGAATGTGAAATCCTCTCCCTAGTAGATACGTTTTAAAATCGTGAAGCTGATGACAATACGTAATGGCTAAAGTGGACAATATCTGCTAGCGGTGGGCTTGAGCTGTTACAAATGGTATCAAAGCTAGATACTGGGCGCTGTGCCAGCAAAGATGCTAGACCCCCAAGGGGGTGGATTGTGAGATCCCATATCGGTTGGGGAGAGAAACAAAACATTCCTTATAAGGATGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAATCGTGAGGCTGACGGTGATACGTAACAAGCTAAAATGGATAATATCTGCTTAGTTGAGTTTCTATTTTTTAGAAACATCATTTTGAGCTAGCTATGAACATTTCTGTGATTCGAAAATGTTGCTGTTGTGAGTACTAGTATTTCTAGCTCTGTTGGATGTTTTTGGTTGTGTTTGAATTTTTTTGATCTTAAAGTGGAATCTTTCTGCTCTCCCTATATTGATCAATGATTAGATATTCACAGGATCTTGTCTTGTCTTAAACAATCGTTTTCCGACAAATCAAGAACTCATCAAAAGCCATATATCAAACACAAATGGCTTGCTGATATTAGATTATCAAATGAAGTTTATTCCAATTTCAAGCATACTCAAAACTGGCTTCCTTGAAATTGTGCATGTTTTCACTCACCTGTTTTAATTCATTTAGTTGATATCTGATATGGAAGTAGTTTCAAGACCCATTTCTATTGGCTATGGTGAATCATTGTTGATTATAAGAATTCAAATAAGCAGAAATTAAACATACTGGTAGTTCTTGTTCTAAGACTTGGCTGCAACTGTTTGTCTCATATGTGGGTTGAATGGGATTCACTAAGACAATTGGTGGAGAGCTTTTCGGTAACAGCCCAAACTCACCATTAGCAGGTATTGTCCTTTTTGGGCTTCCCCTTTCGAGCTTCCCCTCAATGTTTTTAAAGCTCACCTGCTAGGGAGAGGTTTCTACACGGTTATAAAGAATGCTTCTTATTTCTCTCACAATCCACCCCTTTCAGGACCCAGCGTCCTCGCTGGCATTCGTTCCCCTCTCCATTTTGAAAAACTTCATTTGGTATTCTCTTTTAACTAAAGATTAGCTCATACATGGGCAGGTTTCCCTGTTCGCATTCCTTGTTTTGCATTCATGAACATTGTGAAAAAGAGACAACTTGAACCTTCTCATTTAGTATGAATACGATATGTTGTTTTCTTGTTAGGAGATTTGGTATGAAAGAACTATAGATTTTCATGTCTCTTTTAGTTATTAGGCTGCTATATAAGAACCGTTTTGTAACTATCCCTTTTTGTGTTTGTAATTCTAGCCAATTGGAAAGTATCGGGCCTTTTTTTTTTAATGGATACGAGGATATCTGATCTTCTATCCTTTTGAGTTAATGTAAATGTTTTCTGTCGTTAAAAAAAGAAAGATGTTTTGTTTCGTGTGTGTAACAACCCAAATTCACAACTAGCAGATATTGTCCGCTTTGGCGTTGTCAACCTCACGACTTTGACAGCCTCACAGTTTTAAAAACCGTGAGGGAAAATCCAAAAGAAAAAGTTCAAAGAGGACAATATCTGCTAATGGTGGGCTTGAGCCGTTAGAGTGAACTTCTGTACTAAGGCAACCATAGCAAATATTGATATAAATTTCTTCCACAATTCATTTAACCATTTTGAACTAAAGGATCTATATCTATCTGTAAATGTTGTTCTTCAGGCTATGTGATAGGGAGGAAAAGTCATGGAAAGAGAAAAGCTTCCGAAGAGTCTCAGGACTCAAGCTCTTGGCAAGTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGACACCCTACCAACACAAGATGATACGTTCCAGCGTTCTTTTCACTGGCTGACGGTTGCACAAGCAGTATGATCAACACACACTAAATGATTCATAATTTTTGGCTCTTGATATATACACATGTCCTGTTTGCGTTTTTTCTGAATCCAAGTACTAAACTGCTTTGAGAATTGAGAATAGTTTCATACAAGCTTTGAACTTACAATTTCTATATCAAAAATATATTAGGTTTGTTATTGTAGCAGCTCAAGCTCACCGTTTGCAGATATTGTCCTTTTTGGGCTTTCCTTCGTAGTTTTTAAAACTTATTTGCTAGGTAGAGGTTTTCACACCCTTATAAAGAATGCTTCGTTCCTTTCTCCAACTGATGTGGGATCTTATAGTTATGTGCTCCAACGTTTGTGCATGCTTGTCTGATGCTGGTCTGATTTTTGAAGAATTTAGCATTCTTGTATAACTTGTTTGTCTTCTCTATTCATAAATTTATTTCCTCAAGTTTCTCAACTCCTGGAATTTTGTTTATGGCTGCAGTTGCACAAACCGGTAACCGCAGAAGACTTGGCAGCAGCATCTATTGCTCTCAAGAACATGAGTTGATCAAGAAGATCATGTGCTCTAACACTAAGGTAGTATGAAATGATTCCGCGCCACTTCTATTTGTATTTGGTCACATTATTATCTATATTACCTATTTATTTAATGGGTTTGGCATGATCATGATCTGGCTGAAACTTGACGATGCTGTTAGAAATATATGATCATTAAAAATTTCAATTATATAGAATAAATAATCCAATTGAGCA

mRNA sequence

GCGGGAAAATCTTGGTCACTAATCGATTCTTAGGGCTCAAAAAAGCGGGAAGAAATGGTCAGTTGAATTTCCTCTCTCGAAATCCGAAGCATCGACGTGGGTTTAAGGTTTTTGAATTTAGGGTTTCTTCACAATTGATCAAATGGATTCTGAAAAGGAGAGGAAAAGGGAAGTAATCGTGGATTTTGATTTTGGGAGCGATTCTGGAGCTGTCGATCTCAGCGGTAAAGTCCATCAGCTTCCGTGTGCCGTTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCTAAATCCACTGGTATTGAGGTTGATGGTTTGAGCGTTGAGAATGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCGGAAGGCTACTCTGGCTATGTGATAGGGAGGAAAAGTCATGGAAAGAGAAAAGCTTCCGAAGAGTCTCAGGACTCAAGCTCTTGGCAAGTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGACACCCTACCAACACAAGATGATACGTTCCAGCGTTCTTTTCACTGGCTGACGGTTGCACAAGCATTGCACAAACCGGTAACCGCAGAAGACTTGGCAGCAGCATCTATTGCTCTCAAGAACATGAGTTGATCAAGAAGATCATGTGCTCTAACACTAAGGTAGTATGAAATGATTCCGCGCCACTTCTATTTGTATTTGGTCACATTATTATCTATATTACCTATTTATTTAATGGGTTTGGCATGATCATGATCTGGCTGAAACTTGACGATGCTGTTAGAAATATATGATCATTAAAAATTTCAATTATATAGAATAAATAATCCAATTGAGCA

Coding sequence (CDS)

ATGGATTCTGAAAAGGAGAGGAAAAGGGAAGTAATCGTGGATTTTGATTTTGGGAGCGATTCTGGAGCTGTCGATCTCAGCGGTAAAGTCCATCAGCTTCCGTGTGCCGTTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCTAAATCCACTGGTATTGAGGTTGATGGTTTGAGCGTTGAGAATGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCGGAAGGCTACTCTGGCTATGTGATAGGGAGGAAAAGTCATGGAAAGAGAAAAGCTTCCGAAGAGTCTCAGGACTCAAGCTCTTGGCAAGTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGACACCCTACCAACACAAGATGATACGTTCCAGCGTTCTTTTCACTGGCTGACGGTTGCACAAGCATTGCACAAACCGGTAACCGCAGAAGACTTGGCAGCAGCATCTATTGCTCTCAAGAACATGAGTTGA

Protein sequence

MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

Homology

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BLAST of CmoCh13G004630 vs. ExPASy Swiss-Prot
Match: Q10448 (Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC12B10.15c PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.6e-09
Identity = 38/121 (31.40%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 29  KVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYV 88
           K   LPC + +DGP  V +YF  K   I  +  S      RGR+L G  + LPE Y+G V
Sbjct: 20  KASLLPCHISYDGPAPVFEYFHDK-IQISNNTHSKTTVCLRGRELNGEELDLPENYTGQV 79

Query: 89  I----GRKSHGKRKASEESQDSSSWQVKAKFENITYWNHDTL-PTQDDTFQRS-FHWLTV 144
           +    G ++    + SE+    S+W + + FE +  WN D +  ++ D ++R    W+  
Sbjct: 80  VLCDDGLEND---ETSEKEIPESTWCINSTFEKVMLWNRDNMRSSEKDQWKRGVLEWIQF 136

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BLAST of CmoCh13G004630 vs. ExPASy Swiss-Prot
Match: Q8TDP1 (Ribonuclease H2 subunit C OS=Homo sapiens OX=9606 GN=RNASEH2C PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-08
Identity = 42/137 (30.66%), Postives = 64/137 (46.72%), Query Frame = 0


Query: 30  VHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVI 89
           +H LPC V  DGP  V ++F P +     +GL V    FRGR L+G  +++P G  GYV+
Sbjct: 29  LHLLPCEVAVDGPAPVGRFFTP-AIRQGPEGLEVS---FRGRCLRGEEVAVPPGLVGYVM 88

Query: 90  ----GRKSHGK----RKASEESQDSSSWQ--------VKAKFENITYWNHDTLPTQDDTF 149
                + S GK    R +  + Q+    +          A F   T W  +T+P  D   
Sbjct: 89  VTEEKKVSMGKPDPLRDSGTDDQEEEPLERDFDRFIGATANFSRFTLWGLETIPGPDAKV 148

Query: 150 QRSFHWLTVAQALHKPV 151
           + +  W ++A A+H  V
Sbjct: 149 RGALTWPSLAAAIHAQV 161

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BLAST of CmoCh13G004630 vs. ExPASy TrEMBL
Match: A0A6J1EN41 (uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.3e-89
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60
           MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120
           LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of CmoCh13G004630 vs. ExPASy TrEMBL
Match: A0A6J1KH29 (uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.1e-84
Identity = 160/166 (96.39%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60
           MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120
           LSV+NAYFRGRKLQGATISLPEGY GYVIGRKS  KRKASEESQDSSSWQVKAKFENITY
Sbjct: 61  LSVQNAYFRGRKLQGATISLPEGYYGYVIGRKSLRKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLA AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLADASTALKNMS 166

[Close]

BLAST of CmoCh13G004630 vs. ExPASy TrEMBL
Match: A0A6J1CLH6 (ribonuclease H2 subunit C OS=Momordica charantia OX=3673 GN=LOC111012558 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.0e-70
Identity = 136/166 (81.93%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60
           MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TGIEVDG
Sbjct: 1   MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDG 60

Query: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120
           LSVE AYFRGRKLQGATISLPEGYSG+V+GRK  GKRKASE+SQD  SW+VKAKF NITY
Sbjct: 61  LSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKASEQSQD--SWEVKAKFGNITY 120

Query: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           WNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA+AS A K+MS
Sbjct: 121 WNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS 164

[Close]

BLAST of CmoCh13G004630 vs. ExPASy TrEMBL
Match: A0A5A7TIT8 (Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00020 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.5e-70
Identity = 131/168 (77.98%), Postives = 148/168 (88.10%), Query Frame = 0


Query: 1   MDSEKERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEV 60
           M+++  RK E  V  DFDFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENI 120
           DGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K+S++  DSS WQVKAKF+NI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           TYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

[Close]

BLAST of CmoCh13G004630 vs. ExPASy TrEMBL
Match: A0A1S3C9A8 (uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.5e-70
Identity = 131/168 (77.98%), Postives = 148/168 (88.10%), Query Frame = 0


Query: 1   MDSEKERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEV 60
           M+++  RK E  V  DFDFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENI 120
           DGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K+S++  DSS WQVKAKF+NI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           TYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

[Close]

BLAST of CmoCh13G004630 vs. NCBI nr
Match: XP_022927160.1 (uncharacterized protein C12B10.15c [Cucurbita moschata])

HSP 1 Score: 337.4 bits (864), Expect = 6.9e-89
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60
           MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120
           LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of CmoCh13G004630 vs. NCBI nr
Match: KAG6583796.1 (Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335.5 bits (859), Expect = 2.6e-88
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60
           MDSE ERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG
Sbjct: 1   MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120
           LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of CmoCh13G004630 vs. NCBI nr
Match: XP_023519278.1 (uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.4 bits (838), Expect = 7.1e-86
Identity = 161/166 (96.99%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60
           MDSE ERKREVIVDFDFGSDSG VDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG
Sbjct: 1   MDSESERKREVIVDFDFGSDSGDVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120
           LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           WNHDTLPTQDDTF RSFHWLTVAQALHKP TAEDLAAAS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFPRSFHWLTVAQALHKPATAEDLAAASTALKNMS 166

[Close]

BLAST of CmoCh13G004630 vs. NCBI nr
Match: KAG7019419.1 (Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327.0 bits (837), Expect = 9.3e-86
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60
           MDSE ERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG  VDG
Sbjct: 1   MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDG 60

Query: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120
           LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 164

[Close]

BLAST of CmoCh13G004630 vs. NCBI nr
Match: XP_023001622.1 (uncharacterized protein C12B10.15c [Cucurbita maxima])

HSP 1 Score: 322.4 bits (825), Expect = 2.3e-84
Identity = 160/166 (96.39%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60
           MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120
           LSV+NAYFRGRKLQGATISLPEGY GYVIGRKS  KRKASEESQDSSSWQVKAKFENITY
Sbjct: 61  LSVQNAYFRGRKLQGATISLPEGYYGYVIGRKSLRKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLA AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLADASTALKNMS 166

[Close]

BLAST of CmoCh13G004630 vs. TAIR 10
Match: AT2G39440.1 (CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 202.6 bits (514), Expect = 2.5e-52
Identity = 95/157 (60.51%), Postives = 121/157 (77.07%), Query Frame = 0


Query: 13  VDFDFGSDSGA-VDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGR 72
           +DF   +D  + VDLS +VHQLPC ++FDGP  VS YFKPKS+ +E+DG+  E A+FRGR
Sbjct: 4   IDFRAAADENSIVDLSSQVHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKTEEAHFRGR 63

Query: 73  KLQGATISLPEGYSGYVIGRKS----HGKRKASEESQDSSSWQVKAKFENITYWNHDTLP 132
           KLQGATISLP GYSG+V+ + S    +GKRKAS  ++D+  W+VKAKF N+TYWNHD+LP
Sbjct: 64  KLQGATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLP 123

Query: 133 TQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKN 165
           ++DDTF RSFHW ++A+ALHKPV  EDL A S   KN
Sbjct: 124 SKDDTFFRSFHWFSIAEALHKPVKVEDLVAVSHGGKN 160

The following BLAST results are available for this feature:

BLAST of CmoCh13G004630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10448	9.6e-09	31.40	Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / AT...	[more]
Q8TDP1	4.7e-08	30.66	Ribonuclease H2 subunit C OS=Homo sapiens OX=9606 GN=RNASEH2C PE=1 SV=1	[more]

BLAST of CmoCh13G004630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EN41	3.3e-89	100.00	uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094...	[more]
A0A6J1KH29	1.1e-84	96.39	uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 P...	[more]
A0A6J1CLH6	2.0e-70	81.93	ribonuclease H2 subunit C OS=Momordica charantia OX=3673 GN=LOC111012558 PE=4 SV...	[more]
A0A5A7TIT8	4.5e-70	77.98	Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3C9A8	4.5e-70	77.98	uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 ...	[more]

BLAST of CmoCh13G004630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927160.1	6.9e-89	100.00	uncharacterized protein C12B10.15c [Cucurbita moschata]	[more]
KAG6583796.1	2.6e-88	99.40	Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023519278.1	7.1e-86	96.99	uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo]	[more]
KAG7019419.1	9.3e-86	98.19	Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023001622.1	2.3e-84	96.39	uncharacterized protein C12B10.15c [Cucurbita maxima]	[more]

BLAST of CmoCh13G004630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39440.1	2.5e-52	60.51	CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.128.680		coord: 2..153 e-value: 3.4E-39 score: 135.4
None	No IPR available	PANTHER	PTHR47204	OS02G0168900 PROTEIN	coord: 17..159
IPR013924	Ribonuclease H2, subunit C	PFAM	PF08615	RNase_H2_suC	coord: 30..146 e-value: 5.1E-23 score: 81.8
IPR013924	Ribonuclease H2, subunit C	CDD	cd09271	RNase_H2-C	coord: 31..124 e-value: 1.39591E-36 score: 119.783

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G004630.1	CmoCh13G004630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0032299	ribonuclease H2 complex