CmoCh13G004600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G004600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	COX assembly mitochondrial protein
Location	Cmo_Chr13: 5647131 .. 5648273 (-)
RNA-Seq Expression	CmoCh13G004600
Synteny	CmoCh13G004600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACCAACCGGCAAAGCTCCGATCGACGGTGACGGCGGCTACGAGCGGTTAGAGCAGGCTCTCCGAGAGAACCACAACCGATTGCCAGAAGGTCCGGCGCGGCGCTCGGCCTGCCGAAACCTGAACCGATCTCTTGCAGAGTGCGTGGTGGCGACGGCTTGGTTGTTTGATTAGCAAAGCCCACCCACGGCCTCGACGGCAATTGGGTCGTTTGGCCCAATTAGTTTCTTCCCCTGAAGCCCATTGGGCCCAAGATTGGGCCCAAACTCCCGTTCGACTCGAATTTGGATAGTATCTTTAAAAAGGCGTAATGATTCAAAATTTCAAATAAGAAGTCATGTTCTCTTTTTAGAATCTACTCGAGCATTTAGAAATTGATTGGGTGATTGACAATCGTTTCCGCCCAATTCAACCGACTTGTAGACAACAAGAAGGTAGTTAATTAAGCACTTGAATTAGCTGACCGATAGTGATGCTAGTGAACTGAAACATCTAGGTAGCTGAAGGAAGGAAAATCAACTGAGATCCTGTTAGTAGAAGCGAACGAGAGCGGACTGGGGGTTTGAAGAAAAACAAAAAACTCTTGAAATTAGTCTTACATCAGCGTTGAGTCAAGAATATCTTAGTTTAACGGGGTTAGTCAAAATCATATATATTTATATATTTATTTATTTAAAGAAGAAAAAGGGAAAATAGGGTTAATATTAAAAGGTGTGAAGGTGAAGATGCTTGGGGAAGCCTTCAACCACCACATGGACTTCCCACCTTTGCCATCATTGCAAGATATTAATTTACCATCTTTTTTTAACACAACTTTTTATCACCTTTTTAAAATCACCTCAAATCTTTCTATAATTATAACATTTATTAATTTCAAAAATATCTTAGAATGAAGATAAAAATTAAGATACGATTTACCATGCTTGTGGTAGTGTTTTGGTCTCAATTCTAACTTCGGACCACTGTTGTACTGTTTTGCAGGTCATTTTTTTAACGTTTAAAGAGGGTGTTGCTTCTAAAGTAATTTTGAAACGTTTATGAAATGTTAGAGGAAAGTAAAATAATGGATTGGAAGCTTTTAATTTGGCTTTATTAAAGAAGAATAGAGTCAAAGATGTGAAGAAGAAACAAGTGCACTAA

mRNA sequence

ATGTTACCAACCGGCAAAGCTCCGATCGACGGTGACGGCGGCTACGAGCGGTTAGAGCAGGCTCTCCGAGAGAACCACAACCGATTGCCAGAAGGTCCGGCGCGGCGCTCGGCCTGCCGAAACCTGAACCGATCTCTTGCAGAGTGCGTGGTGGCGACGGCTTGGTTTGTTTTGGTCTCAATTCTAACTTCGGACCACTGTTGTACTGTTTTGCAGGTCATTTTTTTAACGTTTAAAGAGGGTGTTGCTTCTAAAAAGAATAGAGTCAAAGATGTGAAGAAGAAACAAGTGCACTAA

Coding sequence (CDS)

ATGTTACCAACCGGCAAAGCTCCGATCGACGGTGACGGCGGCTACGAGCGGTTAGAGCAGGCTCTCCGAGAGAACCACAACCGATTGCCAGAAGGTCCGGCGCGGCGCTCGGCCTGCCGAAACCTGAACCGATCTCTTGCAGAGTGCGTGGTGGCGACGGCTTGGTTTGTTTTGGTCTCAATTCTAACTTCGGACCACTGTTGTACTGTTTTGCAGGTCATTTTTTTAACGTTTAAAGAGGGTGTTGCTTCTAAAAAGAATAGAGTCAAAGATGTGAAGAAGAAACAAGTGCACTAA

Protein sequence

MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATAWFVLVSILTSDHCCTVLQVIFLTFKEGVASKKNRVKDVKKKQVH

Homology

[Close]

BLAST of CmoCh13G004600 vs. ExPASy TrEMBL
Match: A0A0A0LYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.5e-15
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 55
          MLP G++P+ GDGG +RLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

[Close]

BLAST of CmoCh13G004600 vs. ExPASy TrEMBL
Match: A0A6J1K2P5 (uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVAT 54
          M+PTGKAPI GDGG ERLEQALR+ H RLPEGPARRS C +LNRS AEC+VAT
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVAT 53

[Close]

BLAST of CmoCh13G004600 vs. ExPASy TrEMBL
Match: A0A6J1GSM0 (uncharacterized protein LOC111457119 OS=Cucurbita moschata OX=3662 GN=LOC111457119 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVAT 54
          M+PTGKAPI GDGG ERLEQALR+ H RLPEGPARRS C +LNRS AEC+VAT
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVAT 53

[Close]

BLAST of CmoCh13G004600 vs. ExPASy TrEMBL
Match: A0A5D3CLT3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00190 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 55
          MLP G++P+ GD G ERLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

[Close]

BLAST of CmoCh13G004600 vs. ExPASy TrEMBL
Match: A0A1S3C8S8 (uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 55
          MLP G++P+ GD G ERLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

[Close]

BLAST of CmoCh13G004600 vs. NCBI nr
Match: KAG7019417.1 (hypothetical protein SDJN02_18378, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 6.6e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATAW 56
          MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATAW
Sbjct: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATAW 59

[Close]

BLAST of CmoCh13G004600 vs. NCBI nr
Match: XP_038893663.1 (uncharacterized protein LOC120082530 [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 3.9e-15
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 55
          MLPTG A I GDGG ERLEQALRE H RLPEGPARRSACR+LNRSLAEC+VATA
Sbjct: 6  MLPTGGASICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRSLAECLVATA 59

[Close]

BLAST of CmoCh13G004600 vs. NCBI nr
Match: KAE8653663.1 (hypothetical protein Csa_007602 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 55
          MLP G++P+ GDGG +RLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

[Close]

BLAST of CmoCh13G004600 vs. NCBI nr
Match: XP_004145445.1 (uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 55
          MLP G++P+ GDGG +RLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

[Close]

BLAST of CmoCh13G004600 vs. NCBI nr
Match: XP_023542217.1 (uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVAT 54
          M+PTGKAPI GDGG ERLEQALR+ H RLPEGPARRS C +LNRS AEC+VAT
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVAT 53

[Close]

BLAST of CmoCh13G004600 vs. TAIR 10
Match: AT1G31175.1 (unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 7.6e-09
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 16 ERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 55
          +RLE+AL + H R+PEGPARRS CR+LN++ AECVVA A
Sbjct: 35 DRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEA 73

The following BLAST results are available for this feature:

BLAST of CmoCh13G004600 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G004600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYC1	5.5e-15	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1	[more]
A0A6J1K2P5	2.1e-14	79.25	uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507...	[more]
A0A6J1GSM0	2.1e-14	79.25	uncharacterized protein LOC111457119 OS=Cucurbita moschata OX=3662 GN=LOC1114571...	[more]
A0A5D3CLT3	3.5e-14	77.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C8S8	3.5e-14	77.78	uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=...	[more]

BLAST of CmoCh13G004600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019417.1	6.6e-23	100.00	hypothetical protein SDJN02_18378, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038893663.1	3.9e-15	85.19	uncharacterized protein LOC120082530 [Benincasa hispida]	[more]
KAE8653663.1	1.1e-14	77.78	hypothetical protein Csa_007602 [Cucumis sativus]	[more]
XP_004145445.1	1.1e-14	77.78	uncharacterized protein LOC101219184 [Cucumis sativus]	[more]
XP_023542217.1	3.3e-14	79.25	uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh13G004600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31175.1	7.6e-09	66.67	unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bac...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G004600.1	CmoCh13G004600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion