CmoCh13G004560 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G004560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionGlycine cleavage system H protein
LocationCmo_Chr13: 5623806 .. 5626160 (-)
RNA-Seq ExpressionCmoCh13G004560
SyntenyCmoCh13G004560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGAGGTTGGTTTGGGCTTCAAGAGTTGCTTCGTATCTCAGGATCTCAATACCCCATAGAGGGTTTGCTTCTGGTGAGCCGAACCCACGTTTTTTATGTACTGATTTTCCTAATTCTTTATCAGTTTTGATTGATCTGTTTGTCTGGTAGATGGATATTTGAAACTGATCGATCTTCTTTTCACATTCGAAGATCTCAGTTTCCATTGATGGGTTTTGTTTATATTGCCGTTTGTTTGATCAATGGCTTACCCTTTTCAAGATTTGCAGGATTTCTCTCTGTTTTTGGGTTCACAGATGTTATTCTACTGCTAAATCTACATCTGTTGATATGCATTGTGTTTTCACCTTCCATTTGAATTGTTGTGTGATGAATCCCAAACATGAGATATTGTGTTCTACTTTCCTTTTTATCGCCTTCCTTTGATTTGTTCATGTGTTCTTATTTCAATCTTGTTGTTTGAACTAATACCGGTGCCTTGGTGATCTTTCTAGCTGCTGATAATTTAGTTTTCTCGTTTTGATATCGATCTTCCTCCCTGGGTTTGCTTTGCTAGTAGATAGACTCTATGCACATGTCATGTAATAGCCCAAGCTCACCGCGGGCCGATATTGTCCTCTTCAAGCTTTCCCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGACGTTTACACACCCTTATAAGGAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAATTCCACCCCTTGGCTAGCACACCCCTTGGTGTCTGGCTTTGATACCATTTGTAACCGCTCAAACCCACAGCTAGCAGATATTGTCTCTTTGGGTTTTTCTTTTTGGGATTCCCCTCAATGTTTTTAATACGCGTCTGCTAGGGAGAAGTTTCCACATTCTTCATTCGTTCTCCTCTCCAACCGATGTGGGACCTCACAATCCACCCCTTGAGGACCACACCACTTGGTGTCTGGCTCTGATACCAGTTGTAACAGTCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGAGTTTTCCCTCTTGGGCTTCCCCTCAAGATTTTTAAAACATGTCTACTAGGGAGAGGTTTCCACACCCTTATAAGCAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACGTGCCGCTTTTATTTATTGTTTTCAAGCTGAAACATGAGTGTAGAGAATTAACGTGTACCTTGAATTTGTGCAGTTGTTAAGGACTTGAAGTATGCTACTTCTCATGAATGGGTGAAAGTAGAAGGGGATAAAGCAACGATTGGCATAACTGATCATGCTCAAGATCATTTGGGTGATGTTGTCTATGTTGAATTACCAGAGGTAGGAACCTCTGTTAAACAGGATAGCAGTTTCGGTGCGGTCGAAAGTGTCAAAGCTACCAGTGATATTAACTCGCCTGTGTCGGGGAAAATCGTTGAGGTCAATGACAAGCTCAGCAGTTCCCCTGCTCTGGTTAGTTCCTCGACCGAATGTTCTTGCTCTTAATAATGATCTGACAATGGCTCTGGAAAGATTTAAGTTTGTTTTACTTATTCTTTGCACTTTTAGATACTTTAAGATGGATTCTATCTAACAAATGACTTGAGTCTTAGTTTGATTACTTGATATTTATATGTTAGAGGTGCACTAGTATCTCTTCTTGTATCATCAACAAGTCATTTGAGTTTGCATATTGCAGATTCTAAGTTCTTTGGATTCTATAGCTTTCCTTGATCATATTCAGGAGACAGCCTGCCTACCGTTGGATGTTTTATTCCTTAGAAGGGTGTGGAAACTTCTCCATAGTAGATGCGTTTTAAAACTGTGAGGTTGATGGCGATATGAAGTGGGCCAAAGCGGACAATATATGCTAGTGGTGAGCTTGGGCTGTTACAAATGGTAACAGAGCCAGACACTGGGTAGTGTGCTAGGGAGGACGTTAGGCCCCATAGGGGGTGGATTATGAGATCCCACATCGGTTGGAGAGGGGAAAGAGTGCCAGTGAGGACGCTTGGCGGCCCCGAAGGGGGATGGACTATGATATCTCACATCGGTTGGAGAGGGGAACGAAACATTTTTTATAAGAGTGTGGAAACCTCTCTCTAGCACTGTGAGGCTGACGGCGACACGTAACGGACTAAAATGAACAATTTTGTTTTGTTTTGTGTTGTATACGAGTAGGAGTACGAGTGATTTGGGTGTTATTGATGAATATGTATGTGTTAATAACGTAGGTGAACTCAAGCCCATATGAGAATGGATGGATAATTAAGGTGGAGGTTAGTGACAGTAATGAACTGAAGAATTTGATGGACTCTGAGCAGTACTCCAAGTTCTGTGAAGAAGAAGATCATTGA

mRNA sequence

ATGGCGTCGAGGTTGGTTTGGGCTTCAAGAGTTGCTTCGTATCTCAGGATCTCAATACCCCATAGAGGGTTTGCTTCTGGTGAGCCGAACCCACTTGTTAAGGACTTGAAGTATGCTACTTCTCATGAATGGGTGAAAGTAGAAGGGGATAAAGCAACGATTGGCATAACTGATCATGCTCAAGATCATTTGGGTGATGTTGTCTATGTTGAATTACCAGAGGTAGGAACCTCTGTTAAACAGGATAGCAGTTTCGGTGCGGTCGAAAGTGTCAAAGCTACCAGTGATATTAACTCGCCTGTGTCGGGGAAAATCGTTGAGGTCAATGACAAGCTCAGCAGTTCCCCTGCTCTGGTGAACTCAAGCCCATATGAGAATGGATGGATAATTAAGGTGGAGGTTAGTGACAGTAATGAACTGAAGAATTTGATGGACTCTGAGCAGTACTCCAAGTTCTGTGAAGAAGAAGATCATTGA

Coding sequence (CDS)

ATGGCGTCGAGGTTGGTTTGGGCTTCAAGAGTTGCTTCGTATCTCAGGATCTCAATACCCCATAGAGGGTTTGCTTCTGGTGAGCCGAACCCACTTGTTAAGGACTTGAAGTATGCTACTTCTCATGAATGGGTGAAAGTAGAAGGGGATAAAGCAACGATTGGCATAACTGATCATGCTCAAGATCATTTGGGTGATGTTGTCTATGTTGAATTACCAGAGGTAGGAACCTCTGTTAAACAGGATAGCAGTTTCGGTGCGGTCGAAAGTGTCAAAGCTACCAGTGATATTAACTCGCCTGTGTCGGGGAAAATCGTTGAGGTCAATGACAAGCTCAGCAGTTCCCCTGCTCTGGTGAACTCAAGCCCATATGAGAATGGATGGATAATTAAGGTGGAGGTTAGTGACAGTAATGAACTGAAGAATTTGATGGACTCTGAGCAGTACTCCAAGTTCTGTGAAGAAGAAGATCATTGA

Protein sequence

MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHAQDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVNSSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEEDH
Homology
[Close]
BLAST of CmoCh13G004560 vs. ExPASy Swiss-Prot
Match: O82179 (Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GDH2 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.1e-61
Identity = 118/157 (75.16%), Postives = 136/157 (86.62%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHA 60
           MA RL WASRVAS+LRIS+  RGF+S     ++KDLKYA SHEWVK++G+KAT GITDHA
Sbjct: 1   MACRLFWASRVASHLRISVAQRGFSS----VVLKDLKYADSHEWVKIDGNKATFGITDHA 60

Query: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120
           QDHLGDVVYVELP+VG SV Q  SFGAVESVKATSDINSPVSGK+VEVN++L+ SP LVN
Sbjct: 61  QDHLGDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTESPGLVN 120

Query: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           SSPYE GWIIKVE+SD+ E + LMDS++YSKFCEEED
Sbjct: 121 SSPYEQGWIIKVELSDAGEAEKLMDSDKYSKFCEEED 153

[Close]
BLAST of CmoCh13G004560 vs. ExPASy Swiss-Prot
Match: P49359 (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei OX=4226 GN=GDCSH PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.7e-47
Identity = 96/155 (61.94%), Postives = 122/155 (78.71%), Query Frame = 0 

Query: 6   VWASRVASYLRISI---PHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHAQD 65
           +WAS  A+ LR+S    PH    S   + ++  LKYA SHEWVK EG  ATIGITDHAQD
Sbjct: 5   IWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQD 64

Query: 66  HLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVNSS 125
           HLG+VV+V+LPE G SV + + FGAVESVKATSD+NSP+SG+IVEVN KLS +P L+NSS
Sbjct: 65  HLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSS 124

Query: 126 PYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           PYE+GW+IKV+ S+ +EL +LM +++Y+KFCEEED
Sbjct: 125 PYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEED 159

[Close]
BLAST of CmoCh13G004560 vs. ExPASy Swiss-Prot
Match: Q39732 (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala OX=35877 GN=GDCSH PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.9e-47
Identity = 99/160 (61.88%), Postives = 125/160 (78.12%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISI---PHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGIT 60
           MA R+ WAS  A+ LR+S    PH    S   + ++  LKYA SHEWVK EG  ATIGIT
Sbjct: 1   MALRM-WASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGIT 60

Query: 61  DHAQDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPA 120
           DHAQDHLG+VV+V+LPE G SV + + FGAVESVKATSD+NSP+SG+IVEVN KLS +P 
Sbjct: 61  DHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPG 120

Query: 121 LVNSSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           L+NSSPYE+GW+IKV+ S+ +EL +LM +++Y+KFCEEED
Sbjct: 121 LINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEED 159

[Close]
BLAST of CmoCh13G004560 vs. ExPASy Swiss-Prot
Match: P46485 (Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia OX=4227 GN=GDCSH PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.5e-46
Identity = 97/159 (61.01%), Postives = 121/159 (76.10%), Query Frame = 0 

Query: 6   VWASRVASYLRISI---PH-----RGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGIT 65
           +WAS  A  LR+S    PH     R F+S     ++  LKYA SHEWVK EG  ATIGIT
Sbjct: 5   IWASSTAKALRLSSASRPHFSPLFRCFSSA---AVLDGLKYANSHEWVKHEGSVATIGIT 64

Query: 66  DHAQDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPA 125
           DHAQDHLG+VV+VELPEVG SV + + FGAVESVKATSD+NSP+SG+IVEVN KL+ +P 
Sbjct: 65  DHAQDHLGEVVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPG 124

Query: 126 LVNSSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEE 157
           L+N SPYE+GW+IKV+ S+ +EL +LM  ++Y+KFCEEE
Sbjct: 125 LINKSPYEDGWMIKVKPSNPSELDSLMGPKEYTKFCEEE 160

[Close]
BLAST of CmoCh13G004560 vs. ExPASy Swiss-Prot
Match: A2Z9B8 (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GDCSH PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-44
Identity = 96/165 (58.18%), Postives = 119/165 (72.12%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEP--------NPLVKDLKYATSHEWVKVEGDKA 60
           MA RL WAS  A+ L+IS    G     P        + ++  LKY++SHEWVK +G  A
Sbjct: 1   MALRL-WASSAANALKISC--SGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVA 60

Query: 61  TIGITDHAQDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKL 120
           TIGITDHAQ HLG+VV+VELPE G  V Q  +FG VESVKATSDINSP+SG++VEVNDKL
Sbjct: 61  TIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKL 120

Query: 121 SSSPALVNSSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           S +P L+NSSPYE+GW+IKV+ S  +EL  L+D  +Y+K CEEED
Sbjct: 121 SETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEED 162

[Close]
BLAST of CmoCh13G004560 vs. ExPASy TrEMBL
Match: A0A6J1EMT7 (Glycine cleavage system H protein OS=Cucurbita moschata OX=3662 GN=LOC111434000 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 151/157 (96.18%), Postives = 152/157 (96.82%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHA 60
           MASRLVWASRVASYLRISIPHRGFAS     +VKDLKYATSHEWVKVEGDKATIGITDHA
Sbjct: 1   MASRLVWASRVASYLRISIPHRGFAS-----VVKDLKYATSHEWVKVEGDKATIGITDHA 60

Query: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120
           QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN
Sbjct: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120

Query: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED
Sbjct: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 152

[Close]
BLAST of CmoCh13G004560 vs. ExPASy TrEMBL
Match: A0A6J1KN98 (Glycine cleavage system H protein OS=Cucurbita maxima OX=3661 GN=LOC111495697 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.8e-75
Identity = 149/158 (94.30%), Postives = 152/158 (96.20%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHA 60
           MASRLVWASRVASYLRISIPHRGFAS     +VKDLKYATSHEWVKVEGDKATIGITDHA
Sbjct: 1   MASRLVWASRVASYLRISIPHRGFAS-----VVKDLKYATSHEWVKVEGDKATIGITDHA 60

Query: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120
           QDHLGDVVYVELPEVGTSVKQD SFGAVESVKATSDINSPVSGKIVEVND+LSSSPALVN
Sbjct: 61  QDHLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPALVN 120

Query: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEEDH 159
           SSPYENGWIIKVEVSDS+ELKNLMDSEQYSKFCEEEDH
Sbjct: 121 SSPYENGWIIKVEVSDSDELKNLMDSEQYSKFCEEEDH 153

[Close]
BLAST of CmoCh13G004560 vs. ExPASy TrEMBL
Match: A0A6J1KN94 (Glycine cleavage system H protein OS=Cucurbita maxima OX=3661 GN=LOC111495697 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.9e-74
Identity = 148/157 (94.27%), Postives = 151/157 (96.18%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHA 60
           MASRLVWASRVASYLRISIPHRGFAS     +VKDLKYATSHEWVKVEGDKATIGITDHA
Sbjct: 1   MASRLVWASRVASYLRISIPHRGFAS-----VVKDLKYATSHEWVKVEGDKATIGITDHA 60

Query: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120
           QDHLGDVVYVELPEVGTSVKQD SFGAVESVKATSDINSPVSGKIVEVND+LSSSPALVN
Sbjct: 61  QDHLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPALVN 120

Query: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           SSPYENGWIIKVEVSDS+ELKNLMDSEQYSKFCEEED
Sbjct: 121 SSPYENGWIIKVEVSDSDELKNLMDSEQYSKFCEEED 152

[Close]
BLAST of CmoCh13G004560 vs. ExPASy TrEMBL
Match: A0A6J1EGY1 (Glycine cleavage system H protein OS=Cucurbita moschata OX=3662 GN=LOC111433999 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 142/157 (90.45%), Postives = 148/157 (94.27%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHA 60
           MASRL+WASR AS+LRISIP+RGFAS     +VKDLKYATSHEWVKVEGDKATIGITDHA
Sbjct: 1   MASRLLWASRAASFLRISIPYRGFAS-----VVKDLKYATSHEWVKVEGDKATIGITDHA 60

Query: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120
           QDHLGDVVYVELPE+G SVKQD SFGAVESVKATSDINSPVSGKIVEVND+LSSSP LVN
Sbjct: 61  QDHLGDVVYVELPEIGASVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPGLVN 120

Query: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED
Sbjct: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 152

[Close]
BLAST of CmoCh13G004560 vs. ExPASy TrEMBL
Match: A0A5D3CLV3 (Glycine cleavage system H protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00460 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.0e-71
Identity = 142/157 (90.45%), Postives = 147/157 (93.63%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHA 60
           MASRLVWASR ASYLRISIP RGFAS     +VKDLKYATSHEWVKVEGDKAT+GITDHA
Sbjct: 1   MASRLVWASRAASYLRISIPFRGFAS-----VVKDLKYATSHEWVKVEGDKATVGITDHA 60

Query: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120
           QDHLGDVVYVELPEVGTSVKQD SFGAVESVKATSDINSPVSGKI+EVN++LSSSP LVN
Sbjct: 61  QDHLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVN 120

Query: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           SSPYENGWIIKVEVSDS ELKNLMDSEQYSKFCEEED
Sbjct: 121 SSPYENGWIIKVEVSDSGELKNLMDSEQYSKFCEEED 152

[Close]
BLAST of CmoCh13G004560 vs. NCBI nr
Match: XP_022927060.1 (glycine cleavage system H protein 2, mitochondrial-like [Cucurbita moschata] >XP_022927061.1 glycine cleavage system H protein 2, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 292.0 bits (746), Expect = 3.2e-75
Identity = 151/157 (96.18%), Postives = 152/157 (96.82%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHA 60
           MASRLVWASRVASYLRISIPHRGFAS     +VKDLKYATSHEWVKVEGDKATIGITDHA
Sbjct: 1   MASRLVWASRVASYLRISIPHRGFAS-----VVKDLKYATSHEWVKVEGDKATIGITDHA 60

Query: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120
           QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN
Sbjct: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120

Query: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED
Sbjct: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 152

[Close]
BLAST of CmoCh13G004560 vs. NCBI nr
Match: XP_023520356.1 (glycine cleavage system H protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023520357.1 glycine cleavage system H protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023520358.1 glycine cleavage system H protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >KAG6583789.1 Glycine cleavage system H protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290.8 bits (743), Expect = 7.0e-75
Identity = 149/158 (94.30%), Postives = 152/158 (96.20%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHA 60
           MASRLVWASRVASYLRISIPHRGFAS     +VKDLKYATSHEWVKVEGDKATIGITDHA
Sbjct: 1   MASRLVWASRVASYLRISIPHRGFAS-----VVKDLKYATSHEWVKVEGDKATIGITDHA 60

Query: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120
           QDHLGDVVYVELPEVGTSVKQD SFGAVESVKATSDINSPVSGKIVEVND+LSSSPALVN
Sbjct: 61  QDHLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPALVN 120

Query: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEEDH 159
           SSPYENGWIIKVEVSDSNELKNLMDSEQY+KFCEEEDH
Sbjct: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYTKFCEEEDH 153

[Close]
BLAST of CmoCh13G004560 vs. NCBI nr
Match: XP_023001629.1 (glycine cleavage system H protein 2, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 149/158 (94.30%), Postives = 152/158 (96.20%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHA 60
           MASRLVWASRVASYLRISIPHRGFAS     +VKDLKYATSHEWVKVEGDKATIGITDHA
Sbjct: 1   MASRLVWASRVASYLRISIPHRGFAS-----VVKDLKYATSHEWVKVEGDKATIGITDHA 60

Query: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120
           QDHLGDVVYVELPEVGTSVKQD SFGAVESVKATSDINSPVSGKIVEVND+LSSSPALVN
Sbjct: 61  QDHLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPALVN 120

Query: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEEDH 159
           SSPYENGWIIKVEVSDS+ELKNLMDSEQYSKFCEEEDH
Sbjct: 121 SSPYENGWIIKVEVSDSDELKNLMDSEQYSKFCEEEDH 153

[Close]
BLAST of CmoCh13G004560 vs. NCBI nr
Match: XP_023001624.1 (glycine cleavage system H protein 2, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_023001626.1 glycine cleavage system H protein 2, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_023001627.1 glycine cleavage system H protein 2, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_023001628.1 glycine cleavage system H protein 2, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 287.0 bits (733), Expect = 1.0e-73
Identity = 148/157 (94.27%), Postives = 151/157 (96.18%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHA 60
           MASRLVWASRVASYLRISIPHRGFAS     +VKDLKYATSHEWVKVEGDKATIGITDHA
Sbjct: 1   MASRLVWASRVASYLRISIPHRGFAS-----VVKDLKYATSHEWVKVEGDKATIGITDHA 60

Query: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120
           QDHLGDVVYVELPEVGTSVKQD SFGAVESVKATSDINSPVSGKIVEVND+LSSSPALVN
Sbjct: 61  QDHLGDVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPALVN 120

Query: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           SSPYENGWIIKVEVSDS+ELKNLMDSEQYSKFCEEED
Sbjct: 121 SSPYENGWIIKVEVSDSDELKNLMDSEQYSKFCEEED 152

[Close]
BLAST of CmoCh13G004560 vs. NCBI nr
Match: KAG6583787.1 (Glycine cleavage system H protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.8 bits (717), Expect = 7.3e-72
Identity = 143/158 (90.51%), Postives = 149/158 (94.30%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHA 60
           MASRL+WASR AS+LRISIP+RGFAS     +VKDLKYATSHEWVKVEGDKATIGITDHA
Sbjct: 1   MASRLLWASRAASFLRISIPYRGFAS-----VVKDLKYATSHEWVKVEGDKATIGITDHA 60

Query: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120
           QDHLGDVVYVELPEVG SVKQD SFGAVESVKATSDINSPVSGKIVEVND+LSSSP LVN
Sbjct: 61  QDHLGDVVYVELPEVGASVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPGLVN 120

Query: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEEDH 159
           SSPYENGWIIKVEVSDSNELKNLMDSEQY+KFCEEEDH
Sbjct: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYTKFCEEEDH 153

[Close]
BLAST of CmoCh13G004560 vs. TAIR 10
Match: AT2G35120.1 (Single hybrid motif superfamily protein )

HSP 1 Score: 236.5 bits (602), Expect = 1.5e-62
Identity = 118/157 (75.16%), Postives = 136/157 (86.62%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNPLVKDLKYATSHEWVKVEGDKATIGITDHA 60
           MA RL WASRVAS+LRIS+  RGF+S     ++KDLKYA SHEWVK++G+KAT GITDHA
Sbjct: 1   MACRLFWASRVASHLRISVAQRGFSS----VVLKDLKYADSHEWVKIDGNKATFGITDHA 60

Query: 61  QDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDKLSSSPALVN 120
           QDHLGDVVYVELP+VG SV Q  SFGAVESVKATSDINSPVSGK+VEVN++L+ SP LVN
Sbjct: 61  QDHLGDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTESPGLVN 120

Query: 121 SSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           SSPYE GWIIKVE+SD+ E + LMDS++YSKFCEEED
Sbjct: 121 SSPYEQGWIIKVELSDAGEAEKLMDSDKYSKFCEEED 153

[Close]
BLAST of CmoCh13G004560 vs. TAIR 10
Match: AT1G32470.1 (Single hybrid motif superfamily protein )

HSP 1 Score: 177.9 bits (450), Expect = 6.2e-45
Identity = 97/169 (57.40%), Postives = 125/169 (73.96%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRIS--------IP----HRGFASGEPNPLVKDLKYATSHEWVKVE 60
           MA R+ WAS  A+ L++S        +P     R F+S     +++ LKYA SHEWVK E
Sbjct: 1   MALRM-WASSTANALKLSSSASKSHLLPAFSISRCFSS-----VLEGLKYANSHEWVKHE 60

Query: 61  GDKATIGITDHAQDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEV 120
           G  ATIGITDHAQDHLG+VV+VELPE  +SV ++ SFGAVESVKATS+I SP+SG+++EV
Sbjct: 61  GSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEV 120

Query: 121 NDKLSSSPALVNSSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           N KL+ SP L+NSSPYE+GW+IKV+ S   EL+ LM  ++Y+KFCEEED
Sbjct: 121 NTKLTESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEED 163

[Close]
BLAST of CmoCh13G004560 vs. TAIR 10
Match: AT2G35370.1 (glycine decarboxylase complex H )

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-44
Identity = 95/166 (57.23%), Postives = 122/166 (73.49%), Query Frame = 0 

Query: 1   MASRLVWASRVASYLRISIPHRGFASGEPNP---------LVKDLKYATSHEWVKVEGDK 60
           MA R+ WAS  A+ L++S      +    +P         +++ LKYA SHEWVK EG  
Sbjct: 1   MALRM-WASSTANALKLS---SSVSKSHLSPFSFSRCFSTVLEGLKYANSHEWVKHEGSV 60

Query: 61  ATIGITDHAQDHLGDVVYVELPEVGTSVKQDSSFGAVESVKATSDINSPVSGKIVEVNDK 120
           ATIGIT HAQDHLG+VV+VELPE  TSV ++ SFGAVESVKATS+I SP+SG+I+EVN K
Sbjct: 61  ATIGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKK 120

Query: 121 LSSSPALVNSSPYENGWIIKVEVSDSNELKNLMDSEQYSKFCEEED 158
           L+ SP L+NSSPYE+GW+IKV+ S   EL++LM  ++Y+KFCEEED
Sbjct: 121 LTESPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEED 162

The following BLAST results are available for this feature:
BLAST of CmoCh13G004560 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O821792.1e-6175.16Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
P493591.7e-4761.94Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei OX=4226 GN... [more]
Q397322.9e-4761.88Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala OX=35877 GN... [more]
P464855.5e-4661.01Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia OX=4227 G... [more]
A2Z9B83.0e-4458.18Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica O... [more]
BLAST of CmoCh13G004560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EMT71.5e-7596.18Glycine cleavage system H protein OS=Cucurbita moschata OX=3662 GN=LOC111434000 ... [more]
A0A6J1KN985.8e-7594.30Glycine cleavage system H protein OS=Cucurbita maxima OX=3661 GN=LOC111495697 PE... [more]
A0A6J1KN944.9e-7494.27Glycine cleavage system H protein OS=Cucurbita maxima OX=3661 GN=LOC111495697 PE... [more]
A0A6J1EGY11.7e-7190.45Glycine cleavage system H protein OS=Cucurbita moschata OX=3662 GN=LOC111433999 ... [more]
A0A5D3CLV33.0e-7190.45Glycine cleavage system H protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of CmoCh13G004560 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022927060.13.2e-7596.18glycine cleavage system H protein 2, mitochondrial-like [Cucurbita moschata] >XP... [more]
XP_023520356.17.0e-7594.30glycine cleavage system H protein 2, mitochondrial-like [Cucurbita pepo subsp. p... [more]
XP_023001629.11.2e-7494.30glycine cleavage system H protein 2, mitochondrial-like isoform X2 [Cucurbita ma... [more]
XP_023001624.11.0e-7394.27glycine cleavage system H protein 2, mitochondrial-like isoform X1 [Cucurbita ma... [more]
KAG6583787.17.3e-7290.51Glycine cleavage system H protein 2, mitochondrial, partial [Cucurbita argyrospe... [more]
BLAST of CmoCh13G004560 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G35120.11.5e-6275.16Single hybrid motif superfamily protein [more]
AT1G32470.16.2e-4557.40Single hybrid motif superfamily protein [more]
AT2G35370.11.4e-4457.23glycine decarboxylase complex H [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.100coord: 26..156
e-value: 7.6E-59
score: 199.1
NoneNo IPR availablePANTHERPTHR11715:SF31GLYCINE CLEAVAGE SYSTEM H PROTEINcoord: 3..157
IPR033753Glycine cleavage system H-protein/SimiatePFAMPF01597GCV_Hcoord: 36..155
e-value: 1.6E-50
score: 170.1
IPR033753Glycine cleavage system H-protein/SimiateCDDcd06848GCS_Hcoord: 38..132
e-value: 1.22427E-51
score: 157.695
IPR017453Glycine cleavage system H-protein, subgroupTIGRFAMTIGR00527TIGR00527coord: 34..157
e-value: 8.3E-53
score: 175.8
IPR002930Glycine cleavage system H-proteinPANTHERPTHR11715GLYCINE CLEAVAGE SYSTEM H PROTEINcoord: 3..157
IPR002930Glycine cleavage system H-proteinHAMAPMF_00272GcvHcoord: 33..154
score: 39.750893
IPR0030162-oxo acid dehydrogenase, lipoyl-binding sitePROSITEPS00189LIPOYLcoord: 76..105
IPR000089Biotin/lipoyl attachmentPROSITEPS50968BIOTINYL_LIPOYLcoord: 51..133
score: 30.259363
IPR011053Single hybrid motifSUPERFAMILY51230Single hybrid motifcoord: 33..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G004560.1CmoCh13G004560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019464 glycine decarboxylation via glycine cleavage system
biological_process GO:0009249 protein lipoylation
cellular_component GO:0005960 glycine cleavage complex
cellular_component GO:0005739 mitochondrion