CmoCh13G004410 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G004410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	plant UBX domain-containing protein 4-like
Location	Cmo_Chr13: 5515291 .. 5517593 (+)
RNA-Seq Expression	CmoCh13G004410
Synteny	CmoCh13G004410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAAGAAAGAAAGAAAAGAAAAGGGTCGTACCAGAATCCTCTTCCTCAACATTCTCCTCCTCCTCTTCCCATTTGCCTTTCTTCGATCAGCGTCTTCAATGGCGTCACGGGATGAGAAGCCGTCGAAGCCCTCCAGCAGTCGGACCGGCGGTATTCGAACCCTTTCCGATCTTAACCGACGGTCCCCTGATTCTGTTGGCGACCCCGATGCTCCTCAAGAGTATTACACCGGTGGTGAGAAGAGGTCTCTTTTCTGCCCTAATTTTTACTTCCTTTTTCTTCTTGCTTTTACTTACGTCAATTTCTATTCCACATATCATTCCATTCCATCAGGAGAATGTTTATAAGAGTCTTCTTCCGTTTTCATACCTAATCTTAATATGTATGCCCTCATCCTTCTTCTCAATTGAAAGGTTATGGAAAATCCATTTCATTCCGGATTCCTCTAAATGATCGTTCCATATATTTTGGTTACTTGGGGTCCGGTATAAACAAGTAGGCATTCTGATAACCAACTCTAATTTTGAGCACAAATTTACAAAGTTCGGATCAACAACACATAAGCCTAGAATTAGATTACCTCCTTGAATTAGATTACCTCCCACCATCAAAGATCTAAAAGCAAGATTTGGAAACTTGTTCTAAATTGAGACACTCCACAATCGAACATGATCAAGGCTTGATTGAATGACTCTGAATCGCTCGGATGCGTTTATCACAAAAAAATTTTGAAACTTAGAAATGAAGTTAGAAATGAACGATGCTCAAAATTTCTAAGAGTCTGTCTCTTAAGTAGTAATTTGTCTCTTAAGTAGTAATTTGTGGGTATGTATAGTCTCCCCTGTGGCCATAATTTACTCCTACTCCTTTGAATCTTTAAATCTCCAAGTCAATTTGACAAATAACTTCCCACCCTTTTGTCCACTACGAGAATTATGAAATTAAAATAATAAATAAAGTTTTGTAACAACTTATCAATTAAGTTGCAACCGTGCAAATATTCACCTCTGAAACTTCAAATTGTCCCTTCTCAATCGAATCAGCTTGTAACATATGAAATAATGGTTGAACCAAGCCTATCAAATTTGTAGATGAAGAATGATTGAATCTTCTTGTATAGTGTAATAGGTCCAGTTGGAGGAGGTAGCCTCTTCTGAACTCTGTTCTATTTGCCCACCAAGTGTTAGCAAACTCTGGCAAAAAAATTTAACTATATATTTTTTCCAACTTCCAATTGAAAACTTGACAAAACCGAAGAAGAGAGCCCAATTCTTACTGATATCAACCCAAGGTCTTCCACCACCAGCAGTCTTAGTCTCTACGGCCTTCCAACCACTGGAATTACAACCATAAATGGCAACAATCACTTTCCTCCAAAAGGCCTCCTTTTCAAAGCTAAACCTCCACAACCATTTCAACAAGGGAGGTATTTCTATACTGAAGAGAACCTACACCCAAACCTCCAAGGGCAGTCAGCATTGAATTGGTTAGCAGCTAACCAAATTGGTACCTGGTTTGTAAGTTCCCCCATGTCAGGCAAAGTCTCATCATTTTCTCCATGGCTCTTATAGTCTTCAATGGGGCCTTAAGGAGCGTGAAAGGGTAGATGGGGATACTATTCGACACCGATTGAGCTAGAGTCGATCTACCTCCCTTGGAAAGGAGGAGGCCAAACCACTTGTCCTGTTTCATCACCATTTTGTTGATAATAGCCTTTTCAAATAATCGTGGGAACACTGCTACTAAATCATGCTTCACAATGTTCCATGCTTTTTTAAAAAATTTGCTAGTTGTACCATCGGGGCCTGAGGAATTTTGGTTTCCCATATCGGAAATGGCTTTGAAAATCTCTTCCTCACTAAAAGGAACCTCAATGCTTCCTTTTTCATGCTCTGTATTGGTGTAGACATGCTTTTCCTTTCAATGATTATAGCTTTTGCTGATCTGAGGTTGACAATATTGGTTGATGCTTATTGAATGATAACTCTGTTTCCAACTTTCAGTGGGATGCTTGTACAAGATCCTACAAAGGGTAATGATGTGGATTCACTTTTCAATCACGCTAGACAAATGGGAGCTGTGGAAGGCCCTATTGATCATGCCCGTTCATCAACCTCCAGCAGCTTTACTGGAACTGGTAGGTTACTCACAGGAGAAACTGTCCGTTCTGCACCTGATCAGCCTGAGAACCTTGTTCACAATATTGTATTCTGGAGTAATGGTTTTACCGTAAATGATAGCCCTTTGAGGAGGTTGGATGATCCTGAAAACGCATCCTTTTTGGAGGTAGATGAAATATAA

mRNA sequence

AATAAAGAAAGAAAGAAAAGAAAAGGGTCGTACCAGAATCCTCTTCCTCAACATTCTCCTCCTCCTCTTCCCATTTGCCTTTCTTCGATCAGCGTCTTCAATGGCGTCACGGGATGAGAAGCCGTCGAAGCCCTCCAGCAGTCGGACCGGCGGTATTCGAACCCTTTCCGATCTTAACCGACGGTCCCCTGATTCTGTTGGCGACCCCGATGCTCCTCAAGAGTATTACACCGGTGGTGAGAAGAGGTCTTCCACCACCAGCAGTCTTAGTCTCTACGGCCTTCCAACCACTGGAATTACAACCATAAATGGCAACAATCACTTTCCTCCAAAAGGCCTCCTTTTCAAAGCTAAACCTCCACAACCATTTCAACAAGGGAGTGGGATGCTTGTACAAGATCCTACAAAGGGTAATGATGTGGATTCACTTTTCAATCACGCTAGACAAATGGGAGCTGTGGAAGGCCCTATTGATCATGCCCGTTCATCAACCTCCAGCAGCTTTACTGGAACTGGTAGGTTACTCACAGGAGAAACTGTCCGTTCTGCACCTGATCAGCCTGAGAACCTTGTTCACAATATTGTATTCTGGAGTAATGGTTTTACCGTAAATGATAGCCCTTTGAGGAGGTTGGATGATCCTGAAAACGCATCCTTTTTGGAGGTAGATGAAATATAA

Coding sequence (CDS)

ATGGCGTCACGGGATGAGAAGCCGTCGAAGCCCTCCAGCAGTCGGACCGGCGGTATTCGAACCCTTTCCGATCTTAACCGACGGTCCCCTGATTCTGTTGGCGACCCCGATGCTCCTCAAGAGTATTACACCGGTGGTGAGAAGAGGTCTTCCACCACCAGCAGTCTTAGTCTCTACGGCCTTCCAACCACTGGAATTACAACCATAAATGGCAACAATCACTTTCCTCCAAAAGGCCTCCTTTTCAAAGCTAAACCTCCACAACCATTTCAACAAGGGAGTGGGATGCTTGTACAAGATCCTACAAAGGGTAATGATGTGGATTCACTTTTCAATCACGCTAGACAAATGGGAGCTGTGGAAGGCCCTATTGATCATGCCCGTTCATCAACCTCCAGCAGCTTTACTGGAACTGGTAGGTTACTCACAGGAGAAACTGTCCGTTCTGCACCTGATCAGCCTGAGAACCTTGTTCACAATATTGTATTCTGGAGTAATGGTTTTACCGTAAATGATAGCCCTTTGAGGAGGTTGGATGATCCTGAAAACGCATCCTTTTTGGAGGTAGATGAAATATAA

Protein sequence

MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEKRSSTTSSLSLYGLPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAVEGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDDPENASFLEVDEI

Homology

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BLAST of CmoCh13G004410 vs. ExPASy Swiss-Prot
Match: Q8RWU7 (Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUX4 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.0e-46
Identity = 107/189 (56.61%), Postives = 122/189 (64.55%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRS-PDSVGDPDAPQEYYTGGEKRSSTTSSLSLY 60
           M+S+D+KPSKPSSSR GGIRTLSDLNRRS PDS  D D PQEYYTGGEK           
Sbjct: 1   MSSKDKKPSKPSSSR-GGIRTLSDLNRRSGPDSDSDSDGPQEYYTGGEK----------- 60

Query: 61  GLPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGA 120
                                             SGMLVQDP+K +DVD +FN ARQ+GA
Sbjct: 61  ----------------------------------SGMLVQDPSKKDDVDEIFNQARQLGA 120

Query: 121 VEGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLD 180
           VEGP++   S  S SFTGTGRLL+GE V +   QPE +VHNIVFWSNGFT++D PLR+LD
Sbjct: 121 VEGPLEPPPS--SRSFTGTGRLLSGENVPTGNQQPEPVVHNIVFWSNGFTIDDGPLRKLD 141

Query: 181 DPENASFLE 189
           DPENASFLE
Sbjct: 181 DPENASFLE 141

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BLAST of CmoCh13G004410 vs. ExPASy Swiss-Prot
Match: Q9SUG6 (Plant UBX domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUX3 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.9e-46
Identity = 105/192 (54.69%), Postives = 125/192 (65.10%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRS-PDSVGDPDAPQEYYTGGEKRSSTTSSLSLY 60
           M+S+D+K SKP+S RTGGIRTLSDLNRRS PDS  D D PQEY+TGGEK           
Sbjct: 1   MSSKDKKLSKPTSGRTGGIRTLSDLNRRSEPDSDSDSDGPQEYFTGGEK----------- 60

Query: 61  GLPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPT---KGNDVDSLFNHARQ 120
                                             SGMLVQDPT   K +DVD +FN ARQ
Sbjct: 61  ----------------------------------SGMLVQDPTKEPKHDDVDEIFNQARQ 120

Query: 121 MGAVEGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLR 180
           +GAVEGP++H   S+S SFTGTGRLL+GE+V +A  QPE ++HNI+FWSNGFTV+D PLR
Sbjct: 121 LGAVEGPLEH--PSSSRSFTGTGRLLSGESVPTALQQPEPVIHNIIFWSNGFTVDDGPLR 145

Query: 181 RLDDPENASFLE 189
           +LDDPENASFL+
Sbjct: 181 KLDDPENASFLD 145

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BLAST of CmoCh13G004410 vs. ExPASy Swiss-Prot
Match: Q7Y175 (Plant UBX domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PUX5 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-27
Identity = 81/192 (42.19%), Postives = 100/192 (52.08%), Query Frame = 0


Query: 6   EKPSKPSSSRT----GGIRTLSDLNRRSPDSVG-DPDAPQEYYTGGEKRSSTTSSLSLYG 65
           E PS   SSR+    G IRT +DLNR   D  G D D   EYYTGG+K            
Sbjct: 118 ENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSDEANEYYTGGQK------------ 177

Query: 66  LPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAV 125
                                            SGM+VQDP K  DVD LF+ ARQ  AV
Sbjct: 178 ---------------------------------SGMMVQDPKKVKDVDELFDQARQ-SAV 237

Query: 126 EGPIDHARSSTSSSFTGTGRLLTGETVRSAP-----DQPENLVHNIVFWSNGFTVNDSPL 185
           + P++ +RS+ S+SFTG  RLL+GE V S+P     +QP+ ++H I FW NGFTVND PL
Sbjct: 238 DRPVEPSRSA-STSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPL 262

Query: 186 RRLDDPENASFL 188
           R   DPENA+F+
Sbjct: 298 RGFSDPENAAFM 262

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BLAST of CmoCh13G004410 vs. ExPASy Swiss-Prot
Match: Q54BQ5 (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum OX=44689 GN=nsfl1c PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10
Identity = 59/193 (30.57%), Postives = 82/193 (42.49%), Query Frame = 0


Query: 11  PSSSRTGGIRTLSDLNRRSPD----SVGD---PDAPQEYYTGGEKRSSTTSSLSLYGLPT 70
           P+  R GGIRTLSD N    D    S GD    D  Q+Y+TGGEK               
Sbjct: 93  PAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEK--------------- 152

Query: 71  TGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAVEGP 130
                          GL+ ++ P +    GSG +V D         +F+ A++ GAV   
Sbjct: 153 --------------SGLVVESAPKKGKNGGSGDIVND---------VFDSAKRHGAVAS- 212

Query: 131 IDHARSSTSSSFTGTGRLL----TGETVRSAPDQ--PENLV--HNIVFWSNGFTVNDSPL 189
            +  +     SF   G  L     G    S P +  P + V    + FW+ GFT++D PL
Sbjct: 213 -NEKKVEKPDSFDSVGYQLGATDQGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPL 245

[Close]

BLAST of CmoCh13G004410 vs. ExPASy Swiss-Prot
Match: F4IXN6 (Plant UBX domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=PUX6 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10
Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 0


Query: 61  LPTTGITTINGNNHFPPKGLLFKAKPPQPF---------------QQGSGMLVQDPTK-- 120
           +PT+  +T +G++ + P  L  + +PP P                +QG+G +  D     
Sbjct: 47  IPTSSFSTFDGSSGYSPSRL--QLRPPWPSLKRAAANPFSRQNKRRQGAGNVRIDDFSGG 106

Query: 121 -GNDVDSLFNH--ARQMGAVEGPIDHARSSTSSSFTGTGRLLTGETVRS-APDQPENL-V 180
            G+D D    H    +  A+E P   +RS            ++ ETV S   ++P+ +  
Sbjct: 107 TGSDSDEAVEHYGGEENRAIERPEQSSRS------------MSEETVSSELEEEPQKVFT 166

Query: 181 HNIVFWSNGFTVNDSPLRRLDDPENASFLEV 190
           H +  WSNGFTV+DS L+ LDDPENA+FLE+
Sbjct: 167 HTVTSWSNGFTVDDSSLKTLDDPENATFLEI 183

[Close]

BLAST of CmoCh13G004410 vs. ExPASy TrEMBL
Match: A0A6J1EN72 (plant UBX domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111434111 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.3e-68
Identity = 143/188 (76.06%), Postives = 143/188 (76.06%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEKRSSTTSSLSLYG 60
           MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK            
Sbjct: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK------------ 60

Query: 61  LPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAV 120
                                            SGMLVQDPTKGNDVDSLFNHARQMGAV
Sbjct: 61  ---------------------------------SGMLVQDPTKGNDVDSLFNHARQMGAV 120

Query: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD 180
           EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD
Sbjct: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD 143

Query: 181 PENASFLE 189
           PENASFLE
Sbjct: 181 PENASFLE 143

[Close]

BLAST of CmoCh13G004410 vs. ExPASy TrEMBL
Match: A0A6J1KLQ3 (plant UBX domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111495698 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 141/188 (75.00%), Postives = 142/188 (75.53%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEKRSSTTSSLSLYG 60
           MASRDEKPSKP SSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK            
Sbjct: 1   MASRDEKPSKPCSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK------------ 60

Query: 61  LPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAV 120
                                            SGMLVQDPTKGNDVDSLFNHARQMGAV
Sbjct: 61  ---------------------------------SGMLVQDPTKGNDVDSLFNHARQMGAV 120

Query: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD 180
           EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPEN+VHNIVFWSNGFTVNDSPLRRLDD
Sbjct: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENVVHNIVFWSNGFTVNDSPLRRLDD 143

Query: 181 PENASFLE 189
           PENASFLE
Sbjct: 181 PENASFLE 143

[Close]

BLAST of CmoCh13G004410 vs. ExPASy TrEMBL
Match: A0A5A7TIL3 (Plant UBX domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00810 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.6e-64
Identity = 134/188 (71.28%), Postives = 139/188 (73.94%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEKRSSTTSSLSLYG 60
           MASRD+KPSKPSSSRTGGIRTLSDLNRRSPDSVGDPD PQEYYTGGEK            
Sbjct: 1   MASRDDKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEK------------ 60

Query: 61  LPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAV 120
                                            SGMLVQDPTKGNDVDSLFN ARQMGAV
Sbjct: 61  ---------------------------------SGMLVQDPTKGNDVDSLFNQARQMGAV 120

Query: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD 180
           EGPIDHARSS SSSFTGTGRLL+GETVRSAPDQPE++VHNIVFWSNGFTVND PLRRLDD
Sbjct: 121 EGPIDHARSSGSSSFTGTGRLLSGETVRSAPDQPESIVHNIVFWSNGFTVNDGPLRRLDD 143

Query: 181 PENASFLE 189
           PEN+SFLE
Sbjct: 181 PENSSFLE 143

[Close]

BLAST of CmoCh13G004410 vs. ExPASy TrEMBL
Match: A0A1S3C997 (plant UBX domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498242 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.6e-64
Identity = 134/188 (71.28%), Postives = 139/188 (73.94%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEKRSSTTSSLSLYG 60
           MASRD+KPSKPSSSRTGGIRTLSDLNRRSPDSVGDPD PQEYYTGGEK            
Sbjct: 1   MASRDDKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEK------------ 60

Query: 61  LPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAV 120
                                            SGMLVQDPTKGNDVDSLFN ARQMGAV
Sbjct: 61  ---------------------------------SGMLVQDPTKGNDVDSLFNQARQMGAV 120

Query: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD 180
           EGPIDHARSS SSSFTGTGRLL+GETVRSAPDQPE++VHNIVFWSNGFTVND PLRRLDD
Sbjct: 121 EGPIDHARSSGSSSFTGTGRLLSGETVRSAPDQPESIVHNIVFWSNGFTVNDGPLRRLDD 143

Query: 181 PENASFLE 189
           PEN+SFLE
Sbjct: 181 PENSSFLE 143

[Close]

BLAST of CmoCh13G004410 vs. ExPASy TrEMBL
Match: A0A0A0M3Q0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701220 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.2e-63
Identity = 133/188 (70.74%), Postives = 140/188 (74.47%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEKRSSTTSSLSLYG 60
           MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPD+PQEYYTGGEK            
Sbjct: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDSPQEYYTGGEK------------ 60

Query: 61  LPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAV 120
                                            SGMLVQDPTKGNDVDSLFN ARQMGAV
Sbjct: 61  ---------------------------------SGMLVQDPTKGNDVDSLFNQARQMGAV 120

Query: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD 180
           EGPIDHARSS SSSFTGTGR+L+GETVRSAPDQPE++VHNIVFWSNGFTVN+ PLRRLDD
Sbjct: 121 EGPIDHARSSGSSSFTGTGRVLSGETVRSAPDQPESIVHNIVFWSNGFTVNEGPLRRLDD 143

Query: 181 PENASFLE 189
           PEN+SFLE
Sbjct: 181 PENSSFLE 143

[Close]

BLAST of CmoCh13G004410 vs. NCBI nr
Match: XP_022927190.1 (plant UBX domain-containing protein 4-like [Cucurbita moschata])

HSP 1 Score: 269.2 bits (687), Expect = 2.7e-68
Identity = 143/188 (76.06%), Postives = 143/188 (76.06%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEKRSSTTSSLSLYG 60
           MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK            
Sbjct: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK------------ 60

Query: 61  LPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAV 120
                                            SGMLVQDPTKGNDVDSLFNHARQMGAV
Sbjct: 61  ---------------------------------SGMLVQDPTKGNDVDSLFNHARQMGAV 120

Query: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD 180
           EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD
Sbjct: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD 143

Query: 181 PENASFLE 189
           PENASFLE
Sbjct: 181 PENASFLE 143

[Close]

BLAST of CmoCh13G004410 vs. NCBI nr
Match: KAG7032424.1 (Plant UBX domain-containing protein 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.1 bits (684), Expect = 5.9e-68
Identity = 143/191 (74.87%), Postives = 144/191 (75.39%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEKRSSTTSSLSLYG 60
           MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK            
Sbjct: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK------------ 60

Query: 61  LPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAV 120
                                            SGMLVQDPTKGNDVDSLFNHARQMGAV
Sbjct: 61  ---------------------------------SGMLVQDPTKGNDVDSLFNHARQMGAV 120

Query: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD 180
           EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPEN+VHNIVFWSNGFTVNDSPLRRLDD
Sbjct: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENVVHNIVFWSNGFTVNDSPLRRLDD 146

Query: 181 PENASFLEVDE 192
           PENASFLE  E
Sbjct: 181 PENASFLEEPE 146

[Close]

BLAST of CmoCh13G004410 vs. NCBI nr
Match: KAG6583775.1 (Plant UBX domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268.1 bits (684), Expect = 5.9e-68
Identity = 142/188 (75.53%), Postives = 143/188 (76.06%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEKRSSTTSSLSLYG 60
           MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK            
Sbjct: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK------------ 60

Query: 61  LPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAV 120
                                            SGMLVQDPTKGNDVDSLFNHARQMGAV
Sbjct: 61  ---------------------------------SGMLVQDPTKGNDVDSLFNHARQMGAV 120

Query: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD 180
           EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPEN+VHNIVFWSNGFTVNDSPLRRLDD
Sbjct: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENVVHNIVFWSNGFTVNDSPLRRLDD 143

Query: 181 PENASFLE 189
           PENASFLE
Sbjct: 181 PENASFLE 143

[Close]

BLAST of CmoCh13G004410 vs. NCBI nr
Match: XP_023519023.1 (plant UBX domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.1 bits (684), Expect = 5.9e-68
Identity = 142/188 (75.53%), Postives = 143/188 (76.06%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEKRSSTTSSLSLYG 60
           MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK            
Sbjct: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK------------ 60

Query: 61  LPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAV 120
                                            SGMLVQDPTKGNDVDSLFNHARQMGAV
Sbjct: 61  ---------------------------------SGMLVQDPTKGNDVDSLFNHARQMGAV 120

Query: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD 180
           EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPEN+VHNIVFWSNGFTVNDSPLRRLDD
Sbjct: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENVVHNIVFWSNGFTVNDSPLRRLDD 143

Query: 181 PENASFLE 189
           PENASFLE
Sbjct: 181 PENASFLE 143

[Close]

BLAST of CmoCh13G004410 vs. NCBI nr
Match: XP_023001630.1 (plant UBX domain-containing protein 4-like [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-67
Identity = 141/188 (75.00%), Postives = 142/188 (75.53%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEKRSSTTSSLSLYG 60
           MASRDEKPSKP SSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK            
Sbjct: 1   MASRDEKPSKPCSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEK------------ 60

Query: 61  LPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAV 120
                                            SGMLVQDPTKGNDVDSLFNHARQMGAV
Sbjct: 61  ---------------------------------SGMLVQDPTKGNDVDSLFNHARQMGAV 120

Query: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDD 180
           EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPEN+VHNIVFWSNGFTVNDSPLRRLDD
Sbjct: 121 EGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENVVHNIVFWSNGFTVNDSPLRRLDD 143

Query: 181 PENASFLE 189
           PENASFLE
Sbjct: 181 PENASFLE 143

[Close]

BLAST of CmoCh13G004410 vs. TAIR 10
Match: AT4G04210.1 (plant UBX domain containing protein 4 )

HSP 1 Score: 186.4 bits (472), Expect = 2.1e-47
Identity = 107/189 (56.61%), Postives = 122/189 (64.55%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRS-PDSVGDPDAPQEYYTGGEKRSSTTSSLSLY 60
           M+S+D+KPSKPSSSR GGIRTLSDLNRRS PDS  D D PQEYYTGGEK           
Sbjct: 1   MSSKDKKPSKPSSSR-GGIRTLSDLNRRSGPDSDSDSDGPQEYYTGGEK----------- 60

Query: 61  GLPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGA 120
                                             SGMLVQDP+K +DVD +FN ARQ+GA
Sbjct: 61  ----------------------------------SGMLVQDPSKKDDVDEIFNQARQLGA 120

Query: 121 VEGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLD 180
           VEGP++   S  S SFTGTGRLL+GE V +   QPE +VHNIVFWSNGFT++D PLR+LD
Sbjct: 121 VEGPLEPPPS--SRSFTGTGRLLSGENVPTGNQQPEPVVHNIVFWSNGFTIDDGPLRKLD 141

Query: 181 DPENASFLE 189
           DPENASFLE
Sbjct: 181 DPENASFLE 141

[Close]

BLAST of CmoCh13G004410 vs. TAIR 10
Match: AT4G22150.1 (plant UBX domain-containing protein 3 )

HSP 1 Score: 186.0 bits (471), Expect = 2.8e-47
Identity = 105/192 (54.69%), Postives = 125/192 (65.10%), Query Frame = 0


Query: 1   MASRDEKPSKPSSSRTGGIRTLSDLNRRS-PDSVGDPDAPQEYYTGGEKRSSTTSSLSLY 60
           M+S+D+K SKP+S RTGGIRTLSDLNRRS PDS  D D PQEY+TGGEK           
Sbjct: 66  MSSKDKKLSKPTSGRTGGIRTLSDLNRRSEPDSDSDSDGPQEYFTGGEK----------- 125

Query: 61  GLPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPT---KGNDVDSLFNHARQ 120
                                             SGMLVQDPT   K +DVD +FN ARQ
Sbjct: 126 ----------------------------------SGMLVQDPTKEPKHDDVDEIFNQARQ 185

Query: 121 MGAVEGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLR 180
           +GAVEGP++H   S+S SFTGTGRLL+GE+V +A  QPE ++HNI+FWSNGFTV+D PLR
Sbjct: 186 LGAVEGPLEH--PSSSRSFTGTGRLLSGESVPTALQQPEPVIHNIIFWSNGFTVDDGPLR 210

Query: 181 RLDDPENASFLE 189
           +LDDPENASFL+
Sbjct: 246 KLDDPENASFLD 210

[Close]

BLAST of CmoCh13G004410 vs. TAIR 10
Match: AT4G15410.1 (serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma )

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-28
Identity = 81/192 (42.19%), Postives = 100/192 (52.08%), Query Frame = 0


Query: 6   EKPSKPSSSRT----GGIRTLSDLNRRSPDSVG-DPDAPQEYYTGGEKRSSTTSSLSLYG 65
           E PS   SSR+    G IRT +DLNR   D  G D D   EYYTGG+K            
Sbjct: 118 ENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSDEANEYYTGGQK------------ 177

Query: 66  LPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAV 125
                                            SGM+VQDP K  DVD LF+ ARQ  AV
Sbjct: 178 ---------------------------------SGMMVQDPKKVKDVDELFDQARQ-SAV 237

Query: 126 EGPIDHARSSTSSSFTGTGRLLTGETVRSAP-----DQPENLVHNIVFWSNGFTVNDSPL 185
           + P++ +RS+ S+SFTG  RLL+GE V S+P     +QP+ ++H I FW NGFTVND PL
Sbjct: 238 DRPVEPSRSA-STSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPL 262

Query: 186 RRLDDPENASFL 188
           R   DPENA+F+
Sbjct: 298 RGFSDPENAAFM 262

[Close]

BLAST of CmoCh13G004410 vs. TAIR 10
Match: AT3G21660.1 (UBX domain-containing protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-11
Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 0


Query: 61  LPTTGITTINGNNHFPPKGLLFKAKPPQPF---------------QQGSGMLVQDPTK-- 120
           +PT+  +T +G++ + P  L  + +PP P                +QG+G +  D     
Sbjct: 47  IPTSSFSTFDGSSGYSPSRL--QLRPPWPSLKRAAANPFSRQNKRRQGAGNVRIDDFSGG 106

Query: 121 -GNDVDSLFNH--ARQMGAVEGPIDHARSSTSSSFTGTGRLLTGETVRS-APDQPENL-V 180
            G+D D    H    +  A+E P   +RS            ++ ETV S   ++P+ +  
Sbjct: 107 TGSDSDEAVEHYGGEENRAIERPEQSSRS------------MSEETVSSELEEEPQKVFT 166

Query: 181 HNIVFWSNGFTVNDSPLRRLDDPENASFLEV 190
           H +  WSNGFTV+DS L+ LDDPENA+FLE+
Sbjct: 167 HTVTSWSNGFTVDDSSLKTLDDPENATFLEI 183

The following BLAST results are available for this feature:

BLAST of CmoCh13G004410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWU7	3.0e-46	56.61	Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUX4 PE...	[more]
Q9SUG6	3.9e-46	54.69	Plant UBX domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUX3 PE...	[more]
Q7Y175	1.8e-27	42.19	Plant UBX domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PUX5 PE...	[more]
Q54BQ5	3.4e-10	30.57	NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum OX=44689 GN=nsfl1c PE=3 S...	[more]
F4IXN6	3.4e-10	31.79	Plant UBX domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=PUX6 PE...	[more]

BLAST of CmoCh13G004410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EN72	1.3e-68	76.06	plant UBX domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KLQ3	1.1e-67	75.00	plant UBX domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5A7TIL3	5.6e-64	71.28	Plant UBX domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C997	5.6e-64	71.28	plant UBX domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498242 PE...	[more]
A0A0A0M3Q0	1.2e-63	70.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701220 PE=4 SV=1	[more]

BLAST of CmoCh13G004410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927190.1	2.7e-68	76.06	plant UBX domain-containing protein 4-like [Cucurbita moschata]	[more]
KAG7032424.1	5.9e-68	74.87	Plant UBX domain-containing protein 3 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6583775.1	5.9e-68	75.53	Plant UBX domain-containing protein 4, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023519023.1	5.9e-68	75.53	plant UBX domain-containing protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_023001630.1	2.3e-67	75.00	plant UBX domain-containing protein 4-like [Cucurbita maxima]	[more]

BLAST of CmoCh13G004410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04210.1	2.1e-47	56.61	plant UBX domain containing protein 4	[more]
AT4G22150.1	2.8e-47	54.69	plant UBX domain-containing protein 3	[more]
AT4G15410.1	1.3e-28	42.19	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma	[more]
AT3G21660.1	2.4e-11	31.79	UBX domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036241	NSFL1 cofactor p47, SEP domain superfamily	GENE3D	3.30.420.210	SEP domain	coord: 155..190 e-value: 1.1E-11 score: 46.7
IPR036241	NSFL1 cofactor p47, SEP domain superfamily	SUPERFAMILY	102848	NSFL1 (p97 ATPase) cofactor p47, SEP domain	coord: 148..188
IPR012989	SEP domain	PFAM	PF08059	SEP	coord: 161..188 e-value: 1.9E-9 score: 38.0
IPR012989	SEP domain	PROSITE	PS51399	SEP	coord: 156..192 score: 21.083473
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..28
None	No IPR available	PANTHER	PTHR23333:SF28	PLANT UBX DOMAIN-CONTAINING PROTEIN 4	coord: 93..188 coord: 1..49
None	No IPR available	PANTHER	PTHR23333	UBX DOMAIN CONTAINING PROTEIN	coord: 93..188 coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G004410.1	CmoCh13G004410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000045	autophagosome assembly
biological_process	GO:0007030	Golgi organization
biological_process	GO:0061025	membrane fusion
biological_process	GO:0031468	nuclear membrane reassembly
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043130	ubiquitin binding