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CmoCh13G004410 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AATAAAGAAAGAAAGAAAAGAAAAGGGTCGTACCAGAATCCTCTTCCTCAACATTCTCCTCCTCCTCTTCCCATTTGCCTTTCTTCGATCAGCGTCTTCAATGGCGTCACGGGATGAGAAGCCGTCGAAGCCCTCCAGCAGTCGGACCGGCGGTATTCGAACCCTTTCCGATCTTAACCGACGGTCCCCTGATTCTGTTGGCGACCCCGATGCTCCTCAAGAGTATTACACCGGTGGTGAGAAGAGGTCTCTTTTCTGCCCTAATTTTTACTTCCTTTTTCTTCTTGCTTTTACTTACGTCAATTTCTATTCCACATATCATTCCATTCCATCAGGAGAATGTTTATAAGAGTCTTCTTCCGTTTTCATACCTAATCTTAATATGTATGCCCTCATCCTTCTTCTCAATTGAAAGGTTATGGAAAATCCATTTCATTCCGGATTCCTCTAAATGATCGTTCCATATATTTTGGTTACTTGGGGTCCGGTATAAACAAGTAGGCATTCTGATAACCAACTCTAATTTTGAGCACAAATTTACAAAGTTCGGATCAACAACACATAAGCCTAGAATTAGATTACCTCCTTGAATTAGATTACCTCCCACCATCAAAGATCTAAAAGCAAGATTTGGAAACTTGTTCTAAATTGAGACACTCCACAATCGAACATGATCAAGGCTTGATTGAATGACTCTGAATCGCTCGGATGCGTTTATCACAAAAAAATTTTGAAACTTAGAAATGAAGTTAGAAATGAACGATGCTCAAAATTTCTAAGAGTCTGTCTCTTAAGTAGTAATTTGTCTCTTAAGTAGTAATTTGTGGGTATGTATAGTCTCCCCTGTGGCCATAATTTACTCCTACTCCTTTGAATCTTTAAATCTCCAAGTCAATTTGACAAATAACTTCCCACCCTTTTGTCCACTACGAGAATTATGAAATTAAAATAATAAATAAAGTTTTGTAACAACTTATCAATTAAGTTGCAACCGTGCAAATATTCACCTCTGAAACTTCAAATTGTCCCTTCTCAATCGAATCAGCTTGTAACATATGAAATAATGGTTGAACCAAGCCTATCAAATTTGTAGATGAAGAATGATTGAATCTTCTTGTATAGTGTAATAGGTCCAGTTGGAGGAGGTAGCCTCTTCTGAACTCTGTTCTATTTGCCCACCAAGTGTTAGCAAACTCTGGCAAAAAAATTTAACTATATATTTTTTCCAACTTCCAATTGAAAACTTGACAAAACCGAAGAAGAGAGCCCAATTCTTACTGATATCAACCCAAGGTCTTCCACCACCAGCAGTCTTAGTCTCTACGGCCTTCCAACCACTGGAATTACAACCATAAATGGCAACAATCACTTTCCTCCAAAAGGCCTCCTTTTCAAAGCTAAACCTCCACAACCATTTCAACAAGGGAGGTATTTCTATACTGAAGAGAACCTACACCCAAACCTCCAAGGGCAGTCAGCATTGAATTGGTTAGCAGCTAACCAAATTGGTACCTGGTTTGTAAGTTCCCCCATGTCAGGCAAAGTCTCATCATTTTCTCCATGGCTCTTATAGTCTTCAATGGGGCCTTAAGGAGCGTGAAAGGGTAGATGGGGATACTATTCGACACCGATTGAGCTAGAGTCGATCTACCTCCCTTGGAAAGGAGGAGGCCAAACCACTTGTCCTGTTTCATCACCATTTTGTTGATAATAGCCTTTTCAAATAATCGTGGGAACACTGCTACTAAATCATGCTTCACAATGTTCCATGCTTTTTTAAAAAATTTGCTAGTTGTACCATCGGGGCCTGAGGAATTTTGGTTTCCCATATCGGAAATGGCTTTGAAAATCTCTTCCTCACTAAAAGGAACCTCAATGCTTCCTTTTTCATGCTCTGTATTGGTGTAGACATGCTTTTCCTTTCAATGATTATAGCTTTTGCTGATCTGAGGTTGACAATATTGGTTGATGCTTATTGAATGATAACTCTGTTTCCAACTTTCAGTGGGATGCTTGTACAAGATCCTACAAAGGGTAATGATGTGGATTCACTTTTCAATCACGCTAGACAAATGGGAGCTGTGGAAGGCCCTATTGATCATGCCCGTTCATCAACCTCCAGCAGCTTTACTGGAACTGGTAGGTTACTCACAGGAGAAACTGTCCGTTCTGCACCTGATCAGCCTGAGAACCTTGTTCACAATATTGTATTCTGGAGTAATGGTTTTACCGTAAATGATAGCCCTTTGAGGAGGTTGGATGATCCTGAAAACGCATCCTTTTTGGAGGTAGATGAAATATAA AATAAAGAAAGAAAGAAAAGAAAAGGGTCGTACCAGAATCCTCTTCCTCAACATTCTCCTCCTCCTCTTCCCATTTGCCTTTCTTCGATCAGCGTCTTCAATGGCGTCACGGGATGAGAAGCCGTCGAAGCCCTCCAGCAGTCGGACCGGCGGTATTCGAACCCTTTCCGATCTTAACCGACGGTCCCCTGATTCTGTTGGCGACCCCGATGCTCCTCAAGAGTATTACACCGGTGGTGAGAAGAGGTCTTCCACCACCAGCAGTCTTAGTCTCTACGGCCTTCCAACCACTGGAATTACAACCATAAATGGCAACAATCACTTTCCTCCAAAAGGCCTCCTTTTCAAAGCTAAACCTCCACAACCATTTCAACAAGGGAGTGGGATGCTTGTACAAGATCCTACAAAGGGTAATGATGTGGATTCACTTTTCAATCACGCTAGACAAATGGGAGCTGTGGAAGGCCCTATTGATCATGCCCGTTCATCAACCTCCAGCAGCTTTACTGGAACTGGTAGGTTACTCACAGGAGAAACTGTCCGTTCTGCACCTGATCAGCCTGAGAACCTTGTTCACAATATTGTATTCTGGAGTAATGGTTTTACCGTAAATGATAGCCCTTTGAGGAGGTTGGATGATCCTGAAAACGCATCCTTTTTGGAGGTAGATGAAATATAA ATGGCGTCACGGGATGAGAAGCCGTCGAAGCCCTCCAGCAGTCGGACCGGCGGTATTCGAACCCTTTCCGATCTTAACCGACGGTCCCCTGATTCTGTTGGCGACCCCGATGCTCCTCAAGAGTATTACACCGGTGGTGAGAAGAGGTCTTCCACCACCAGCAGTCTTAGTCTCTACGGCCTTCCAACCACTGGAATTACAACCATAAATGGCAACAATCACTTTCCTCCAAAAGGCCTCCTTTTCAAAGCTAAACCTCCACAACCATTTCAACAAGGGAGTGGGATGCTTGTACAAGATCCTACAAAGGGTAATGATGTGGATTCACTTTTCAATCACGCTAGACAAATGGGAGCTGTGGAAGGCCCTATTGATCATGCCCGTTCATCAACCTCCAGCAGCTTTACTGGAACTGGTAGGTTACTCACAGGAGAAACTGTCCGTTCTGCACCTGATCAGCCTGAGAACCTTGTTCACAATATTGTATTCTGGAGTAATGGTTTTACCGTAAATGATAGCCCTTTGAGGAGGTTGGATGATCCTGAAAACGCATCCTTTTTGGAGGTAGATGAAATATAA MASRDEKPSKPSSSRTGGIRTLSDLNRRSPDSVGDPDAPQEYYTGGEKRSSTTSSLSLYGLPTTGITTINGNNHFPPKGLLFKAKPPQPFQQGSGMLVQDPTKGNDVDSLFNHARQMGAVEGPIDHARSSTSSSFTGTGRLLTGETVRSAPDQPENLVHNIVFWSNGFTVNDSPLRRLDDPENASFLEVDEI Homology
BLAST of CmoCh13G004410 vs. ExPASy Swiss-Prot
Match: Q8RWU7 (Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUX4 PE=1 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 3.0e-46 Identity = 107/189 (56.61%), Postives = 122/189 (64.55%), Query Frame = 0
BLAST of CmoCh13G004410 vs. ExPASy Swiss-Prot
Match: Q9SUG6 (Plant UBX domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUX3 PE=1 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 3.9e-46 Identity = 105/192 (54.69%), Postives = 125/192 (65.10%), Query Frame = 0
BLAST of CmoCh13G004410 vs. ExPASy Swiss-Prot
Match: Q7Y175 (Plant UBX domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PUX5 PE=1 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 1.8e-27 Identity = 81/192 (42.19%), Postives = 100/192 (52.08%), Query Frame = 0
BLAST of CmoCh13G004410 vs. ExPASy Swiss-Prot
Match: Q54BQ5 (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum OX=44689 GN=nsfl1c PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10 Identity = 59/193 (30.57%), Postives = 82/193 (42.49%), Query Frame = 0
BLAST of CmoCh13G004410 vs. ExPASy Swiss-Prot
Match: F4IXN6 (Plant UBX domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=PUX6 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10 Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 0
BLAST of CmoCh13G004410 vs. ExPASy TrEMBL
Match: A0A6J1EN72 (plant UBX domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111434111 PE=4 SV=1) HSP 1 Score: 269.2 bits (687), Expect = 1.3e-68 Identity = 143/188 (76.06%), Postives = 143/188 (76.06%), Query Frame = 0
BLAST of CmoCh13G004410 vs. ExPASy TrEMBL
Match: A0A6J1KLQ3 (plant UBX domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111495698 PE=4 SV=1) HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67 Identity = 141/188 (75.00%), Postives = 142/188 (75.53%), Query Frame = 0
BLAST of CmoCh13G004410 vs. ExPASy TrEMBL
Match: A0A5A7TIL3 (Plant UBX domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00810 PE=4 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 5.6e-64 Identity = 134/188 (71.28%), Postives = 139/188 (73.94%), Query Frame = 0
BLAST of CmoCh13G004410 vs. ExPASy TrEMBL
Match: A0A1S3C997 (plant UBX domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498242 PE=4 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 5.6e-64 Identity = 134/188 (71.28%), Postives = 139/188 (73.94%), Query Frame = 0
BLAST of CmoCh13G004410 vs. ExPASy TrEMBL
Match: A0A0A0M3Q0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701220 PE=4 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 1.2e-63 Identity = 133/188 (70.74%), Postives = 140/188 (74.47%), Query Frame = 0
BLAST of CmoCh13G004410 vs. NCBI nr
Match: XP_022927190.1 (plant UBX domain-containing protein 4-like [Cucurbita moschata]) HSP 1 Score: 269.2 bits (687), Expect = 2.7e-68 Identity = 143/188 (76.06%), Postives = 143/188 (76.06%), Query Frame = 0
BLAST of CmoCh13G004410 vs. NCBI nr
Match: KAG7032424.1 (Plant UBX domain-containing protein 3 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 268.1 bits (684), Expect = 5.9e-68 Identity = 143/191 (74.87%), Postives = 144/191 (75.39%), Query Frame = 0
BLAST of CmoCh13G004410 vs. NCBI nr
Match: KAG6583775.1 (Plant UBX domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 268.1 bits (684), Expect = 5.9e-68 Identity = 142/188 (75.53%), Postives = 143/188 (76.06%), Query Frame = 0
BLAST of CmoCh13G004410 vs. NCBI nr
Match: XP_023519023.1 (plant UBX domain-containing protein 4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 268.1 bits (684), Expect = 5.9e-68 Identity = 142/188 (75.53%), Postives = 143/188 (76.06%), Query Frame = 0
BLAST of CmoCh13G004410 vs. NCBI nr
Match: XP_023001630.1 (plant UBX domain-containing protein 4-like [Cucurbita maxima]) HSP 1 Score: 266.2 bits (679), Expect = 2.3e-67 Identity = 141/188 (75.00%), Postives = 142/188 (75.53%), Query Frame = 0
BLAST of CmoCh13G004410 vs. TAIR 10
Match: AT4G04210.1 (plant UBX domain containing protein 4 ) HSP 1 Score: 186.4 bits (472), Expect = 2.1e-47 Identity = 107/189 (56.61%), Postives = 122/189 (64.55%), Query Frame = 0
BLAST of CmoCh13G004410 vs. TAIR 10
Match: AT4G22150.1 (plant UBX domain-containing protein 3 ) HSP 1 Score: 186.0 bits (471), Expect = 2.8e-47 Identity = 105/192 (54.69%), Postives = 125/192 (65.10%), Query Frame = 0
BLAST of CmoCh13G004410 vs. TAIR 10
Match: AT4G15410.1 (serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma ) HSP 1 Score: 124.0 bits (310), Expect = 1.3e-28 Identity = 81/192 (42.19%), Postives = 100/192 (52.08%), Query Frame = 0
BLAST of CmoCh13G004410 vs. TAIR 10
Match: AT3G21660.1 (UBX domain-containing protein ) HSP 1 Score: 66.6 bits (161), Expect = 2.4e-11 Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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