![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CmoCh13G003950 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAACTGCATTGTCTTGCCTTGTGTTCGGTCGCCACAGAAGAAGCTCCGAGGTATCGAAAAAGCCACTGATTTGGCTACAACGGTCGATTCTGCCACCGAATGCTGTAATGACCGTCTTCTCCATGATTTTTCTTCTTCAACAAGAACCAGCCTCCAAGTTGGGGAGGTTCGAGATGTTGTTCCATGCCTGAAAGAGCTCGAAAAGCTTCTGGTTTCCTCGAAGATAGTGTACTCGGATGGAGCGGGAGCGAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTAAATTGCTGTTAGCAAATGCTAAGAAGTTGCAATCTCGACATAGATTGTTCGGCTATACAAGCCCCCGTAGAGAGTGTCGAAAATGGCGACCGACGTTGTCTGCAATCTCAGAAGAAAAGGGTTTTTGAATGGAGTCTTAGAGGGAAACTTGTGTAGCTTTACAGAGATAATGGAGATTAAGTTGAACTTCAAGCTTCATTTGTAGGAATCTGGCAAGCAAATGATCTTACAAAGGCAAAACTACAAGCGCAGAAAGGAAAGGAGAGAAATTACTAATACAAACTTTTTTTTGGGTTGCAAAACTCAATTTTGAGAAATTTTTTTGGGGTTCTTTTTTGAACTAGATTTGAAAATTCGCCCCAGTACGTCAGTACTATAGGGAGATGCGACCAGCCGTCAACTCCTTCCACCTAGATTTTATATGACCGTTCGGCGAAATTACGACTAGGTCTGTAGACTTGAATCGCCTCAAAATGCAGAGGATGTGACTAATTGTCAAATTCTCCCTACCCGAAAAGTTACATGCTATGCTATTTAAGTTGTTGTGTTGCTTTTGCTTATCATATAACATTGTTTTCGGTCTCTCAATCTTGCTTTCAAACTCTTTTTCAAAATCTCTCTGCCCCATTTTCTAAAACCTTCACAAAACGAGACTAGAGAGGCTTGAGCATACTTTGCCAGACCATAGATAACGCAATCCTAATTGCAATCCTAATTTAGCTTGAGTCAGCAACACAGGATTATGACACTTAGTATCAATGGAAACCCATTATTAATGCCAATCCTTCTTGATTTACAATTCAAAAGCAGAATAATCATACTGTTTATTACTCTAAATTGTTCTTTGATTGAGCAAAGGATTAGATATACACAAGAAGAGAAAAGATGTCATTCTTTTCCTCAATAATACCCAGCAATCCATATGGAAATAAAGTGATTACTTCTCTGAAGGGACAAGGCAACCGACCAATCAAGCAAACAGACAGCAATCTGATCAAGCATCCTTGTCCCCACGTTTCCAGTTGTTCCCTGTCTTTTTGACTCATTAACCCCTCTGTCTCCCCCTCTCCTTCAACTCCCCCACAAAAATATCTACTGACTGTACAAGGGTATTTCAGTATTTTCACAATAACGGACTATATGCAAAATAAGAAGCTGATGAACCAAGTTTTGAAACTCATGATCAATACAATGTTTTGCAGTAAAGCATCATCATCACTCATAGCCATTCCTCTCTGTTTCTGTTTCTCAATCTCCATGGACGTTCAAACAAAGGTTCTCCAAAACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGACATTGTTTCTAGCGTTCTTTTGGCTTCTCTTTGCCTCCACAGCTGCACTCTTGGTCGGAATGATCGCTGCCTTTCCAGGTGGTTTCCAAGTTGGAACCGAAATTCATGGTGTAAGAGCAGCAGGTGAAGGGATCCTAGATTATGTTGCAGGACGACCTGAATATGGCAAAAACCACTATAAGTACCGGTAA ATGGGAAACTGCATTGTCTTGCCTTGTGTTCGGTCGCCACAGAAGAAGCTCCGAGGTATCGAAAAAGCCACTGATTTGGCTACAACGGTCGATTCTGCCACCGAATGCTGTAATGACCGTCTTCTCCATGATTTTTCTTCTTCAACAAGAACCAGCCTCCAAGTTGGGGAGGTTCGAGATGTTGTTCCATGCCTGAAAGAGCTCGAAAAGCTTCTGGTTTCCTCGAAGATAGTGTACTCGGATGGAGCGGGAGCGAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTAAATTGCTTATTTTCACAATAACGGACTATATGCAAAATAAGAAGCTGATGAACCAAGTTTTGAAACTCATGATCAATACAATGTTTTGCAGTAAAGCATCATCATCACTCATAGCCATTCCTCTCTGTTTCTGTTTCTCAATCTCCATGGACGTTCAAACAAAGGTTCTCCAAAACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGACATTGTTTCTAGCGTTCTTTTGGCTTCTCTTTGCCTCCACAGCTGCACTCTTGGTCGGAATGATCGCTGCCTTTCCAGGTGGTTTCCAAGTTGGAACCGAAATTCATGGTGTAAGAGCAGCAGGTGAAGGGATCCTAGATTATGTTGCAGGACGACCTGAATATGGCAAAAACCACTATAAGTACCGGTAA ATGGGAAACTGCATTGTCTTGCCTTGTGTTCGGTCGCCACAGAAGAAGCTCCGAGGTATCGAAAAAGCCACTGATTTGGCTACAACGGTCGATTCTGCCACCGAATGCTGTAATGACCGTCTTCTCCATGATTTTTCTTCTTCAACAAGAACCAGCCTCCAAGTTGGGGAGGTTCGAGATGTTGTTCCATGCCTGAAAGAGCTCGAAAAGCTTCTGGTTTCCTCGAAGATAGTGTACTCGGATGGAGCGGGAGCGAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTAAATTGCTTATTTTCACAATAACGGACTATATGCAAAATAAGAAGCTGATGAACCAAGTTTTGAAACTCATGATCAATACAATGTTTTGCAGTAAAGCATCATCATCACTCATAGCCATTCCTCTCTGTTTCTGTTTCTCAATCTCCATGGACGTTCAAACAAAGGTTCTCCAAAACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGACATTGTTTCTAGCGTTCTTTTGGCTTCTCTTTGCCTCCACAGCTGCACTCTTGGTCGGAATGATCGCTGCCTTTCCAGGTGGTTTCCAAGTTGGAACCGAAATTCATGGTGTAAGAGCAGCAGGTGAAGGGATCCTAGATTATGTTGCAGGACGACCTGAATATGGCAAAAACCACTATAAGTACCGGTAA MGNCIVLPCVRSPQKKLRGIEKATDLATTVDSATECCNDRLLHDFSSSTRTSLQVGEVRDVVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLIFTITDYMQNKKLMNQVLKLMINTMFCSKASSSLIAIPLCFCFSISMDVQTKVLQNKDQITVVAAVSVVLTLFLAFFWLLFASTAALLVGMIAAFPGGFQVGTEIHGVRAAGEGILDYVAGRPEYGKNHYKYR Homology
BLAST of CmoCh13G003950 vs. ExPASy TrEMBL
Match: A0A0A0LSY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 9.6e-34 Identity = 84/116 (72.41%), Postives = 94/116 (81.03%), Query Frame = 0
BLAST of CmoCh13G003950 vs. ExPASy TrEMBL
Match: A0A5D3CW41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00390 PE=4 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 9.0e-32 Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 0
BLAST of CmoCh13G003950 vs. ExPASy TrEMBL
Match: A0A5D3CU44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00380 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 7.6e-23 Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = 0
BLAST of CmoCh13G003950 vs. ExPASy TrEMBL
Match: A0A0A0LYI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 1.3e-22 Identity = 69/97 (71.13%), Postives = 78/97 (80.41%), Query Frame = 0
BLAST of CmoCh13G003950 vs. ExPASy TrEMBL
Match: A0A2N9EZM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.0e-06 Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 0
BLAST of CmoCh13G003950 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 370.2 bits (949), Expect = 1.3e-98 Identity = 205/233 (87.98%), Postives = 208/233 (89.27%), Query Frame = 0
BLAST of CmoCh13G003950 vs. NCBI nr
Match: KGN64995.1 (hypothetical protein Csa_022837 [Cucumis sativus]) HSP 1 Score: 153.7 bits (387), Expect = 2.0e-33 Identity = 84/116 (72.41%), Postives = 94/116 (81.03%), Query Frame = 0
BLAST of CmoCh13G003950 vs. NCBI nr
Match: KAA0042344.1 (hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK15468.1 hypothetical protein E5676_scaffold477G00390 [Cucumis melo var. makuwa]) HSP 1 Score: 147.1 bits (370), Expect = 1.9e-31 Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 0
BLAST of CmoCh13G003950 vs. NCBI nr
Match: XP_038877793.1 (uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida]) HSP 1 Score: 123.6 bits (309), Expect = 2.2e-24 Identity = 70/110 (63.64%), Postives = 80/110 (72.73%), Query Frame = 0
BLAST of CmoCh13G003950 vs. NCBI nr
Match: KAA0042343.1 (hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK15467.1 hypothetical protein E5676_scaffold477G00380 [Cucumis melo var. makuwa]) HSP 1 Score: 117.5 bits (293), Expect = 1.6e-22 Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = 0
BLAST of CmoCh13G003950 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 47.8 bits (112), Expect = 1.4e-05 Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|