CmoCh13G003950 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G003950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionBnaC07g33630D protein
LocationCmo_Chr13: 4964527 .. 4966339 (-)
RNA-Seq ExpressionCmoCh13G003950
SyntenyCmoCh13G003950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGCATTGTCTTGCCTTGTGTTCGGTCGCCACAGAAGAAGCTCCGAGGTATCGAAAAAGCCACTGATTTGGCTACAACGGTCGATTCTGCCACCGAATGCTGTAATGACCGTCTTCTCCATGATTTTTCTTCTTCAACAAGAACCAGCCTCCAAGTTGGGGAGGTTCGAGATGTTGTTCCATGCCTGAAAGAGCTCGAAAAGCTTCTGGTTTCCTCGAAGATAGTGTACTCGGATGGAGCGGGAGCGAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTAAATTGCTGTTAGCAAATGCTAAGAAGTTGCAATCTCGACATAGATTGTTCGGCTATACAAGCCCCCGTAGAGAGTGTCGAAAATGGCGACCGACGTTGTCTGCAATCTCAGAAGAAAAGGGTTTTTGAATGGAGTCTTAGAGGGAAACTTGTGTAGCTTTACAGAGATAATGGAGATTAAGTTGAACTTCAAGCTTCATTTGTAGGAATCTGGCAAGCAAATGATCTTACAAAGGCAAAACTACAAGCGCAGAAAGGAAAGGAGAGAAATTACTAATACAAACTTTTTTTTGGGTTGCAAAACTCAATTTTGAGAAATTTTTTTGGGGTTCTTTTTTGAACTAGATTTGAAAATTCGCCCCAGTACGTCAGTACTATAGGGAGATGCGACCAGCCGTCAACTCCTTCCACCTAGATTTTATATGACCGTTCGGCGAAATTACGACTAGGTCTGTAGACTTGAATCGCCTCAAAATGCAGAGGATGTGACTAATTGTCAAATTCTCCCTACCCGAAAAGTTACATGCTATGCTATTTAAGTTGTTGTGTTGCTTTTGCTTATCATATAACATTGTTTTCGGTCTCTCAATCTTGCTTTCAAACTCTTTTTCAAAATCTCTCTGCCCCATTTTCTAAAACCTTCACAAAACGAGACTAGAGAGGCTTGAGCATACTTTGCCAGACCATAGATAACGCAATCCTAATTGCAATCCTAATTTAGCTTGAGTCAGCAACACAGGATTATGACACTTAGTATCAATGGAAACCCATTATTAATGCCAATCCTTCTTGATTTACAATTCAAAAGCAGAATAATCATACTGTTTATTACTCTAAATTGTTCTTTGATTGAGCAAAGGATTAGATATACACAAGAAGAGAAAAGATGTCATTCTTTTCCTCAATAATACCCAGCAATCCATATGGAAATAAAGTGATTACTTCTCTGAAGGGACAAGGCAACCGACCAATCAAGCAAACAGACAGCAATCTGATCAAGCATCCTTGTCCCCACGTTTCCAGTTGTTCCCTGTCTTTTTGACTCATTAACCCCTCTGTCTCCCCCTCTCCTTCAACTCCCCCACAAAAATATCTACTGACTGTACAAGGGTATTTCAGTATTTTCACAATAACGGACTATATGCAAAATAAGAAGCTGATGAACCAAGTTTTGAAACTCATGATCAATACAATGTTTTGCAGTAAAGCATCATCATCACTCATAGCCATTCCTCTCTGTTTCTGTTTCTCAATCTCCATGGACGTTCAAACAAAGGTTCTCCAAAACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGACATTGTTTCTAGCGTTCTTTTGGCTTCTCTTTGCCTCCACAGCTGCACTCTTGGTCGGAATGATCGCTGCCTTTCCAGGTGGTTTCCAAGTTGGAACCGAAATTCATGGTGTAAGAGCAGCAGGTGAAGGGATCCTAGATTATGTTGCAGGACGACCTGAATATGGCAAAAACCACTATAAGTACCGGTAA

mRNA sequence

ATGGGAAACTGCATTGTCTTGCCTTGTGTTCGGTCGCCACAGAAGAAGCTCCGAGGTATCGAAAAAGCCACTGATTTGGCTACAACGGTCGATTCTGCCACCGAATGCTGTAATGACCGTCTTCTCCATGATTTTTCTTCTTCAACAAGAACCAGCCTCCAAGTTGGGGAGGTTCGAGATGTTGTTCCATGCCTGAAAGAGCTCGAAAAGCTTCTGGTTTCCTCGAAGATAGTGTACTCGGATGGAGCGGGAGCGAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTAAATTGCTTATTTTCACAATAACGGACTATATGCAAAATAAGAAGCTGATGAACCAAGTTTTGAAACTCATGATCAATACAATGTTTTGCAGTAAAGCATCATCATCACTCATAGCCATTCCTCTCTGTTTCTGTTTCTCAATCTCCATGGACGTTCAAACAAAGGTTCTCCAAAACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGACATTGTTTCTAGCGTTCTTTTGGCTTCTCTTTGCCTCCACAGCTGCACTCTTGGTCGGAATGATCGCTGCCTTTCCAGGTGGTTTCCAAGTTGGAACCGAAATTCATGGTGTAAGAGCAGCAGGTGAAGGGATCCTAGATTATGTTGCAGGACGACCTGAATATGGCAAAAACCACTATAAGTACCGGTAA

Coding sequence (CDS)

ATGGGAAACTGCATTGTCTTGCCTTGTGTTCGGTCGCCACAGAAGAAGCTCCGAGGTATCGAAAAAGCCACTGATTTGGCTACAACGGTCGATTCTGCCACCGAATGCTGTAATGACCGTCTTCTCCATGATTTTTCTTCTTCAACAAGAACCAGCCTCCAAGTTGGGGAGGTTCGAGATGTTGTTCCATGCCTGAAAGAGCTCGAAAAGCTTCTGGTTTCCTCGAAGATAGTGTACTCGGATGGAGCGGGAGCGAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTAAATTGCTTATTTTCACAATAACGGACTATATGCAAAATAAGAAGCTGATGAACCAAGTTTTGAAACTCATGATCAATACAATGTTTTGCAGTAAAGCATCATCATCACTCATAGCCATTCCTCTCTGTTTCTGTTTCTCAATCTCCATGGACGTTCAAACAAAGGTTCTCCAAAACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGACATTGTTTCTAGCGTTCTTTTGGCTTCTCTTTGCCTCCACAGCTGCACTCTTGGTCGGAATGATCGCTGCCTTTCCAGGTGGTTTCCAAGTTGGAACCGAAATTCATGGTGTAAGAGCAGCAGGTGAAGGGATCCTAGATTATGTTGCAGGACGACCTGAATATGGCAAAAACCACTATAAGTACCGGTAA

Protein sequence

MGNCIVLPCVRSPQKKLRGIEKATDLATTVDSATECCNDRLLHDFSSSTRTSLQVGEVRDVVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLIFTITDYMQNKKLMNQVLKLMINTMFCSKASSSLIAIPLCFCFSISMDVQTKVLQNKDQITVVAAVSVVLTLFLAFFWLLFASTAALLVGMIAAFPGGFQVGTEIHGVRAAGEGILDYVAGRPEYGKNHYKYR
Homology
BLAST of CmoCh13G003950 vs. ExPASy TrEMBL
Match: A0A0A0LSY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.6e-34
Identity = 84/116 (72.41%), Postives = 94/116 (81.03%), Query Frame = 0

Query: 1   MGNCIVLPCVRSPQKKLRGIEKATDLATT-VDSATECCNDRLLHDFSSSTRTSLQVGEVR 60
           MGNCIVLP VRSPQKKLRG++KAT+LATT V SATEC ND LL DF SST+TSLQV EVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  DVVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLIFTITDYMQNKKLMN 116
           +VVPCLKELE LL S KIVYSD AGA+KVKIVVTKEQFKLL+          +L++
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLS 116

BLAST of CmoCh13G003950 vs. ExPASy TrEMBL
Match: A0A5D3CW41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00390 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.0e-32
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 0

Query: 1   MGNCIVLPCVRSPQKKLRGIEKATDLAT-TVDSATECCNDRLLHDFSSSTRTSLQVGEVR 60
           MGNCIVLP VRSPQKKL+G++KAT LAT  V SA+EC ND LL   +SST+TSLQVGEVR
Sbjct: 1   MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60

Query: 61  DVVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLIFTITDYMQNKKLMN 116
           +VVPCLKELE LL SSKIVYSDG GA+KVKIVVT+EQFKLL+          +L++
Sbjct: 61  NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLS 116

BLAST of CmoCh13G003950 vs. ExPASy TrEMBL
Match: A0A5D3CU44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00380 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.6e-23
Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = 0

Query: 147 MDVQTKVLQNKDQITVVAAVSVVLTLF----------LAFFWLLFASTAALLVGMIAAFP 206
           MD+Q K+LQ+KDQITVVAAVSVVL+LF          LAFFW LFASTA LLV ++ AF 
Sbjct: 1   MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLV-VMTAFG 60

Query: 207 GGFQVGTEIHGVRAAGEGILDYVAGRPEYGKNHYKYR 234
           GGFQVG+EIHG+R AGEGILDYVAGRPE G+NHYKY+
Sbjct: 61  GGFQVGSEIHGMR-AGEGILDYVAGRPENGENHYKYQ 95

BLAST of CmoCh13G003950 vs. ExPASy TrEMBL
Match: A0A0A0LYI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-22
Identity = 69/97 (71.13%), Postives = 78/97 (80.41%), Query Frame = 0

Query: 147 MDVQTKVLQNKDQITVVAAVSVVLTLF----------LAFFWLLFASTAALLVGMIAAFP 206
           MD+  KVLQ+KDQ+TVVAAVSVVL+LF          LAFFW LFASTA LLV ++ AF 
Sbjct: 1   MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLV-VMNAFG 60

Query: 207 GGFQVGTEIHGVRAAGEGILDYVAGRPEYGKNHYKYR 234
           GGFQVGTEIHG+R AGEGILDYVAGRPE G+NHYKY+
Sbjct: 61  GGFQVGTEIHGMR-AGEGILDYVAGRPENGENHYKYQ 95

BLAST of CmoCh13G003950 vs. ExPASy TrEMBL
Match: A0A2N9EZM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-06
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 147 MDVQTKVLQNKDQITVVAAVSVVLTL----------FLAFFWLLFASTAALLVGMIAAFP 206
           MD+  K+LQ +  +T+ A V +VL+L           LAFFW LFASTA LL+  I AF 
Sbjct: 1   MDIPEKLLQYRYHLTIAAIVPLVLSLLLYAAPRLVNILAFFWPLFASTAVLLMA-ILAFG 60

Query: 207 GGFQVGTEIHGVRAAGEGILDYVAGRPEY 226
           G  Q  TE HG + AG+GIL+YV G+PE+
Sbjct: 61  GLSQFSTEAHGAK-AGQGILEYVGGQPEH 87

BLAST of CmoCh13G003950 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 370.2 bits (949), Expect = 1.3e-98
Identity = 205/233 (87.98%), Postives = 208/233 (89.27%), Query Frame = 0

Query: 1   MGNCIVLPCVRSPQKKLRGIEKATDLATTVDSATECCNDRLLHDFSSSTRTSLQVGEVRD 60
           MGNCIVLPCVRSPQKKLRGIEKATDLATTVDSATECCND LLHDFSSSTRTSLQVGEVRD
Sbjct: 1   MGNCIVLPCVRSPQKKLRGIEKATDLATTVDSATECCNDHLLHDFSSSTRTSLQVGEVRD 60

Query: 61  VVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLIFTITDYMQNKKLMNQVLKL 120
           VVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLL       + N K      KL
Sbjct: 61  VVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLL-------LANAK------KL 120

Query: 121 MINTMFCSKASSSLIAIPLCFCFSISMDVQTKVLQNKDQITVVAAVSVVLTLFLAFFWLL 180
                F  KASSSLIAIPLCFCFSISMDVQTKVLQNKDQITVVAAVSVVL+LFLAFFW L
Sbjct: 121 QSRHRF--KASSSLIAIPLCFCFSISMDVQTKVLQNKDQITVVAAVSVVLSLFLAFFWPL 180

Query: 181 FASTAALLVGMIAAFPGGFQVGTEIHGVRAAGEGILDYVAGRPEYGKNHYKYR 234
           FASTAALLVGMIAAF GGFQVGT+IHGVRAAGEGILDYVAGRPEYGKNHYKYR
Sbjct: 181 FASTAALLVGMIAAFRGGFQVGTKIHGVRAAGEGILDYVAGRPEYGKNHYKYR 218

BLAST of CmoCh13G003950 vs. NCBI nr
Match: KGN64995.1 (hypothetical protein Csa_022837 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 2.0e-33
Identity = 84/116 (72.41%), Postives = 94/116 (81.03%), Query Frame = 0

Query: 1   MGNCIVLPCVRSPQKKLRGIEKATDLATT-VDSATECCNDRLLHDFSSSTRTSLQVGEVR 60
           MGNCIVLP VRSPQKKLRG++KAT+LATT V SATEC ND LL DF SST+TSLQV EVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  DVVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLIFTITDYMQNKKLMN 116
           +VVPCLKELE LL S KIVYSD AGA+KVKIVVTKEQFKLL+          +L++
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLS 116

BLAST of CmoCh13G003950 vs. NCBI nr
Match: KAA0042344.1 (hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK15468.1 hypothetical protein E5676_scaffold477G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-31
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 0

Query: 1   MGNCIVLPCVRSPQKKLRGIEKATDLAT-TVDSATECCNDRLLHDFSSSTRTSLQVGEVR 60
           MGNCIVLP VRSPQKKL+G++KAT LAT  V SA+EC ND LL   +SST+TSLQVGEVR
Sbjct: 1   MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60

Query: 61  DVVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLIFTITDYMQNKKLMN 116
           +VVPCLKELE LL SSKIVYSDG GA+KVKIVVT+EQFKLL+          +L++
Sbjct: 61  NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLS 116

BLAST of CmoCh13G003950 vs. NCBI nr
Match: XP_038877793.1 (uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida])

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-24
Identity = 70/110 (63.64%), Postives = 80/110 (72.73%), Query Frame = 0

Query: 6   VLPCVRSPQKKLRGIEKATDLATTVDSATECCNDRLLHDFSSSTRTSLQVGEVRDVVPCL 65
           VL   + PQKKLR +EKAT      DSATEC  D LL DF+S TRT LQVGEV+++VPCL
Sbjct: 10  VLMPYQLPQKKLRELEKAT------DSATECGKDPLLLDFTSPTRTILQVGEVQNIVPCL 69

Query: 66  KELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLIFTITDYMQNKKLMN 116
           KELE LL SSKI YSDGAGARKVKIVVTKEQFKLL+          +L++
Sbjct: 70  KELENLLASSKIAYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHRLLS 113

BLAST of CmoCh13G003950 vs. NCBI nr
Match: KAA0042343.1 (hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK15467.1 hypothetical protein E5676_scaffold477G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 1.6e-22
Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = 0

Query: 147 MDVQTKVLQNKDQITVVAAVSVVLTLF----------LAFFWLLFASTAALLVGMIAAFP 206
           MD+Q K+LQ+KDQITVVAAVSVVL+LF          LAFFW LFASTA LLV ++ AF 
Sbjct: 1   MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLV-VMTAFG 60

Query: 207 GGFQVGTEIHGVRAAGEGILDYVAGRPEYGKNHYKYR 234
           GGFQVG+EIHG+R AGEGILDYVAGRPE G+NHYKY+
Sbjct: 61  GGFQVGSEIHGMR-AGEGILDYVAGRPENGENHYKYQ 95

BLAST of CmoCh13G003950 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-05
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 0

Query: 147 MDVQTKVLQNKDQITVVAAVSVVLTL----------FLAFFWLLFASTAALLVGMIAAFP 206
           M++Q K+++ +    V   VSV++             LA+FW LFASTAA L   +A   
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLA--MAITF 181

Query: 207 GGFQVGTEIHGVRAAGEGILDYVAGRPE 225
           GGFQ  +E     A GE ++DYVAGRPE
Sbjct: 182 GGFQQLSE----EATGERLMDYVAGRPE 203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LSY99.6e-3472.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1[more]
A0A5D3CW419.0e-3268.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CU447.6e-2371.13Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LYI81.3e-2271.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1[more]
A0A2N9EZM91.0e-0648.31Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6583721.11.3e-9887.98hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN64995.12.0e-3372.41hypothetical protein Csa_022837 [Cucumis sativus][more]
KAA0042344.11.9e-3168.97hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK1546... [more]
XP_038877793.12.2e-2463.64uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida][more]
KAA0042343.11.6e-2271.13hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK1546... [more]
Match NameE-valueIdentityDescription
AT4G16400.11.4e-0540.91unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34125:SF7TRANSMEMBRANE PROTEINcoord: 126..228
NoneNo IPR availablePANTHERPTHR34125OS01G0762900 PROTEINcoord: 126..228

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003950.1CmoCh13G003950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane