CmoCh13G003700 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G003700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Transposable element protein
Location	Cmo_Chr13: 4721726 .. 4722346 (+)
RNA-Seq Expression	CmoCh13G003700
Synteny	CmoCh13G003700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAGAACCAGACGGACAGGAAAATCAAAAAGTTGAGATCAGACAACGGGGGAGAATATACTTATGATTCATTCCTTAAAGTATGCCGAGATGAAGGGATCGTTCGACACTTCACTGTTCCTGGTAAACCACAACAAAATGGAGTTGCAGAGAGAATGAACCAGACATTAATAGAGAAGGTTCGACGCATATTGTCTCAAGTAGGATTGAGTAAGGCATTTTGTGCTGAGGCTCTCAGTTATGCAGTTCACTTGTTTAATCGTTTACCTGTTTCTAGAAATGGTGGGAGAACTTCGCTTGATGTATGGTCAGGTAGTCCTGTTAGTGATTATGATAAATTGCATGTGTTTGGGTGTCTTGCTTATTATCATGTGACAGACTCAAAGCTGGATCCTAGAGCAAAAAAAAGCCAAGTTTATGGGCTTTAGCAAAGGTGTGAAGGGCTATAGGTTATGGTGTCCAGAAACAGTAAGATTGTTAATAGTCGAGATGTGACATTCGATGAGTCTGAAATGTTTTTGCAGAAAATTGAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAAGTGGTGTTCTCTCCTGATATGGTTGCTCCTATTGAAGAACCTATTGATTAG

mRNA sequence

ATGGGAGAGAACCAGACGGACAGGAAAATCAAAAAGTTGAGATCAGACAACGGGGGAGAATATACTTATGATTCATTCCTTAAAGTATGCCGAGATGAAGGGATCGTTCGACACTTCACTGTTCCTGGTAAACCACAACAAAATGGAGTTGCAGAGAGAATGAACCAGACATTAATAGAGAAGGTTCGACGCATATTGTCTCAAGTAGGATTGAGTAAGGCATTTTGTGCTGAGGCTCTCAGTTATGCAGTTCACTTGTTTAATCGTTTACCTGTTTCTAGAAATGGTGGGAGAACTTCGCTTGATGTATGGTCAGGTAGTCCTAAAATTGAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAAGTGGTGTTCTCTCCTGATATGGTTGCTCCTATTGAAGAACCTATTGATTAG

Coding sequence (CDS)

ATGGGAGAGAACCAGACGGACAGGAAAATCAAAAAGTTGAGATCAGACAACGGGGGAGAATATACTTATGATTCATTCCTTAAAGTATGCCGAGATGAAGGGATCGTTCGACACTTCACTGTTCCTGGTAAACCACAACAAAATGGAGTTGCAGAGAGAATGAACCAGACATTAATAGAGAAGGTTCGACGCATATTGTCTCAAGTAGGATTGAGTAAGGCATTTTGTGCTGAGGCTCTCAGTTATGCAGTTCACTTGTTTAATCGTTTACCTGTTTCTAGAAATGGTGGGAGAACTTCGCTTGATGTATGGTCAGGTAGTCCTAAAATTGAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAAGTGGTGTTCTCTCCTGATATGGTTGCTCCTATTGAAGAACCTATTGATTAG

Protein sequence

MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSPKIENNDEALKQVEKVVFSPDMVAPIEEPID

Homology

[Close]

BLAST of CmoCh13G003700 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-20
Identity = 49/89 (55.06%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           E +T RK+K+LRSDNGGEYT   F + C   GI    TVPG PQ NGVAERMN+T++EKV
Sbjct: 537 ERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKV 596

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLP 92
           R +L    L K+F  EA+  A +L NR P
Sbjct: 597 RSMLRMAKLPKSFWGEAVQTACYLINRSP 625

[Close]

BLAST of CmoCh13G003700 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 9.1e-13
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 9   KIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQ 68
           K+  L  DNG EY  +   + C  +GI  H TVP  PQ NGV+ERM +T+ EK R ++S 
Sbjct: 543 KVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSG 602

Query: 69  VGLSKAFCAEALSYAVHLFNRLPVSR--NGGRTSLDVW 105
             L K+F  EA+  A +L NR+P     +  +T  ++W
Sbjct: 603 AKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMW 640

[Close]

BLAST of CmoCh13G003700 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFT-VPGKPQQNGVAERMNQTLIEK 62
           EN+   +I  L SDNGGE+     L+    +  + HFT  P  P+ NG++ER ++ ++E 
Sbjct: 558 ENRFQTRIGTLYSDNGGEFV---VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEM 617

Query: 63  VRRILSQVGLSKAFCAEALSYAVHLFNRLP 92
              +LS   + K +   A S AV+L NRLP
Sbjct: 618 GLTLLSHASVPKTYWPYAFSVAVYLINRLP 644

[Close]

BLAST of CmoCh13G003700 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 35/122 (28.69%), Postives = 57/122 (46.72%), Query Frame = 0


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           +NQ + ++  ++ D G EYT  +  K   + GI   +T     + +GVAER+N+TL+   
Sbjct: 719 KNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDC 778

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRN-------GGRTSLDVWS----GSPKIE 114
           R +L   GL       A+ ++  + N L   +N        G   LD+ +    G P I 
Sbjct: 779 RTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPVIV 838

[Close]

BLAST of CmoCh13G003700 vs. ExPASy Swiss-Prot
Match: P25384 (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 35/122 (28.69%), Postives = 57/122 (46.72%), Query Frame = 0


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           +NQ + ++  ++ D G EYT  +  K   + GI   +T     + +GVAER+N+TL+   
Sbjct: 719 KNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDC 778

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRN-------GGRTSLDVWS----GSPKIE 114
           R +L   GL       A+ ++  + N L   +N        G   LD+ +    G P I 
Sbjct: 779 RTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPVIV 838

[Close]

BLAST of CmoCh13G003700 vs. ExPASy TrEMBL
Match: A0A7J0H864 (Integrase catalytic domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_27g0009570 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.6e-36
Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIE 60
           M ENQT RKIKKLRSDNGGEY YD FLK+C++EGIVRHFTV   PQQNGVAERMN+TL+ 
Sbjct: 520 MVENQTGRKIKKLRSDNGGEYRYDPFLKICQEEGIVRHFTVRRTPQQNGVAERMNRTLVT 579

Query: 61  KVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
           KVR +LS  GLSKAF AEA+SYA HL NRLP +  GG+T ++VWSG P
Sbjct: 580 KVRCMLSHAGLSKAFWAEAVSYASHLVNRLPAAGIGGKTPMEVWSGKP 627

[Close]

BLAST of CmoCh13G003700 vs. ExPASy TrEMBL
Match: A0A5B7C042 (Putative Ty-1 copia retrotransposon (Fragment) OS=Davidia involucrata OX=16924 GN=Din_043515 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 5.1e-35
Identity = 75/107 (70.09%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIE 60
           M E QT RKI++LRSDNGGEY  D F  +CRDEGIVRHFTV G PQQNGVAERMN+TL+E
Sbjct: 237 MIETQTGRKIRRLRSDNGGEYKSDPFFDICRDEGIVRHFTVSGTPQQNGVAERMNRTLVE 296

Query: 61  KVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGS 108
           KVR +LS  GL KAF AEA++YA HL NRLP + N G+T L+VWSGS
Sbjct: 297 KVRCMLSNAGLGKAFWAEAVNYACHLVNRLPAAANDGKTPLEVWSGS 343

[Close]

BLAST of CmoCh13G003700 vs. ExPASy TrEMBL
Match: A0A5B7BZJ7 (Putative copia LTR rider OS=Davidia involucrata OX=16924 GN=Din_043516 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.8e-35
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIE 60
           M E QT RKI++LRSDNGGEY  D F  +CRDEGIVRHFTV G PQQNGVAERMN+TL+E
Sbjct: 570 MIETQTGRKIRRLRSDNGGEYKSDPFFDICRDEGIVRHFTVSGTPQQNGVAERMNRTLVE 629

Query: 61  KVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGS 108
           KVR +LS  GL KAF AEA++YA H+ NRLP + N G+T L+VWSGS
Sbjct: 630 KVRCMLSNAGLGKAFWAEAVNYACHIVNRLPAAANDGKTPLEVWSGS 676

[Close]

BLAST of CmoCh13G003700 vs. ExPASy TrEMBL
Match: A0A5H2XQM4 (Integrase catalytic domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_848S000100 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.0e-34
Identity = 75/110 (68.18%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 1   MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIE 60
           M E Q+ RKIK LRSDNGGEY  D FLKVC+DEGIVRHFTV   PQQNGVAERMN+TL+E
Sbjct: 199 MIETQSGRKIKTLRSDNGGEYKSDPFLKVCQDEGIVRHFTVRETPQQNGVAERMNRTLLE 258

Query: 61  KVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSPKI 111
           KVR +LS  GL KAF AEA++YA HL NRLP + N G+T ++VWSG P +
Sbjct: 259 KVRCMLSNAGLGKAFWAEAITYASHLINRLPAAANEGKTPMEVWSGKPLV 308

[Close]

BLAST of CmoCh13G003700 vs. ExPASy TrEMBL
Match: A0A4Y1QXX8 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_005583 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.5e-34
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIE 60
           M E Q+ RKIK LRSDNGGEY  D FLKVC+DEGIVRHFTV   PQQNGVAERMN+TL+E
Sbjct: 17  MIETQSGRKIKTLRSDNGGEYKSDPFLKVCQDEGIVRHFTVRETPQQNGVAERMNRTLLE 76

Query: 61  KVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
           KVR +LS  GL KAF AEA++YA HL NRLP + N G+T ++VWSG P
Sbjct: 77  KVRCMLSNAGLGKAFWAEAITYASHLINRLPAAANEGKTPMEVWSGKP 124

[Close]

BLAST of CmoCh13G003700 vs. NCBI nr
Match: GFZ19218.1 (hypothetical protein Acr_27g0009570 [Actinidia rufa])

HSP 1 Score: 162.2 bits (409), Expect = 3.3e-36
Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIE 60
           M ENQT RKIKKLRSDNGGEY YD FLK+C++EGIVRHFTV   PQQNGVAERMN+TL+ 
Sbjct: 520 MVENQTGRKIKKLRSDNGGEYRYDPFLKICQEEGIVRHFTVRRTPQQNGVAERMNRTLVT 579

Query: 61  KVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
           KVR +LS  GLSKAF AEA+SYA HL NRLP +  GG+T ++VWSG P
Sbjct: 580 KVRCMLSHAGLSKAFWAEAVSYASHLVNRLPAAGIGGKTPMEVWSGKP 627

[Close]

BLAST of CmoCh13G003700 vs. NCBI nr
Match: BBN69252.1 (hypothetical protein Prudu_848S000100 [Prunus dulcis])

HSP 1 Score: 155.2 bits (391), Expect = 4.0e-34
Identity = 75/110 (68.18%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 1   MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIE 60
           M E Q+ RKIK LRSDNGGEY  D FLKVC+DEGIVRHFTV   PQQNGVAERMN+TL+E
Sbjct: 199 MIETQSGRKIKTLRSDNGGEYKSDPFLKVCQDEGIVRHFTVRETPQQNGVAERMNRTLLE 258

Query: 61  KVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSPKI 111
           KVR +LS  GL KAF AEA++YA HL NRLP + N G+T ++VWSG P +
Sbjct: 259 KVRCMLSNAGLGKAFWAEAITYASHLINRLPAAANEGKTPMEVWSGKPLV 308

[Close]

BLAST of CmoCh13G003700 vs. NCBI nr
Match: BBN69488.1 (transposable element gene [Prunus dulcis])

HSP 1 Score: 154.8 bits (390), Expect = 5.3e-34
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIE 60
           M E Q+ RKIK LRSDNGGEY  D FLKVC+DEGIVRHFTV   PQQNGVAERMN+TL+E
Sbjct: 551 MIETQSGRKIKTLRSDNGGEYKSDPFLKVCQDEGIVRHFTVRETPQQNGVAERMNRTLLE 610

Query: 61  KVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
           KVR +LS  GL KAF AEA++YA HL NRLP + N G+T ++VWSG P
Sbjct: 611 KVRCMLSNAGLGKAFWAEAITYASHLINRLPAAANEGKTPMEVWSGKP 658

[Close]

BLAST of CmoCh13G003700 vs. NCBI nr
Match: BBH09562.1 (transposable element gene [Prunus dulcis])

HSP 1 Score: 154.8 bits (390), Expect = 5.3e-34
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIE 60
           M E Q+ RKIK LRSDNGGEY  D FLKVC+DEGIVRHFTV   PQQNGVAERMN+TL+E
Sbjct: 551 MIETQSGRKIKTLRSDNGGEYKSDPFLKVCQDEGIVRHFTVRETPQQNGVAERMNRTLLE 610

Query: 61  KVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
           KVR +LS  GL KAF AEA++YA HL NRLP + N G+T ++VWSG P
Sbjct: 611 KVRCMLSNAGLGKAFWAEAITYASHLINRLPAAANEGKTPMEVWSGKP 658

[Close]

BLAST of CmoCh13G003700 vs. NCBI nr
Match: BBG96709.1 (transposable element gene [Prunus dulcis] >BBH04771.1 transposable element gene [Prunus dulcis])

HSP 1 Score: 154.8 bits (390), Expect = 5.3e-34
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIE 60
           M E Q+ RKIK LRSDNGGEY  D FLKVC+DEGIVRHFTV   PQQNGVAERMN+TL+E
Sbjct: 17  MIETQSGRKIKTLRSDNGGEYKSDPFLKVCQDEGIVRHFTVRETPQQNGVAERMNRTLLE 76

Query: 61  KVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
           KVR +LS  GL KAF AEA++YA HL NRLP + N G+T ++VWSG P
Sbjct: 77  KVRCMLSNAGLGKAFWAEAITYASHLINRLPAAANEGKTPMEVWSGKP 124

[Close]

BLAST of CmoCh13G003700 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 54  MNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVW 105
           MN+T+IEKVR +L + GL K F A+A + AVH+ N+ P +        +VW
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVW 51

The following BLAST results are available for this feature:

BLAST of CmoCh13G003700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.0e-20	55.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	9.1e-13	39.80	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	3.3e-07	36.67	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q12491	1.7e-06	28.69	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P25384	1.7e-06	28.69	Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CmoCh13G003700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J0H864	1.6e-36	72.22	Integrase catalytic domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr...	[more]
A0A5B7C042	5.1e-35	70.09	Putative Ty-1 copia retrotransposon (Fragment) OS=Davidia involucrata OX=16924 G...	[more]
A0A5B7BZJ7	8.8e-35	69.16	Putative copia LTR rider OS=Davidia involucrata OX=16924 GN=Din_043516 PE=4 SV=1	[more]
A0A5H2XQM4	2.0e-34	68.18	Integrase catalytic domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_...	[more]
A0A4Y1QXX8	2.5e-34	69.44	Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_005583 PE=4 SV=1	[more]

BLAST of CmoCh13G003700 vs. NCBI nr


Match Name	E-value	Identity	Description
GFZ19218.1	3.3e-36	72.22	hypothetical protein Acr_27g0009570 [Actinidia rufa]	[more]
BBN69252.1	4.0e-34	68.18	hypothetical protein Prudu_848S000100 [Prunus dulcis]	[more]
BBN69488.1	5.3e-34	69.44	transposable element gene [Prunus dulcis]	[more]
BBH09562.1	5.3e-34	69.44	transposable element gene [Prunus dulcis]	[more]
BBG96709.1	5.3e-34	69.44	transposable element gene [Prunus dulcis] >BBH04771.1 transposable element gene ...	[more]

BLAST of CmoCh13G003700 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	1.9e-05	43.14	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..114 e-value: 1.0E-23 score: 85.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..108 score: 16.752663
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 8..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003700.1	CmoCh13G003700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0015074	DNA integration
biological_process	GO:0032259	methylation
biological_process	GO:0045490	pectin catabolic process
molecular_function	GO:0045330	aspartyl esterase activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0030599	pectinesterase activity
molecular_function	GO:0008270	zinc ion binding