CmoCh13G003610 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G003610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr13: 4623476 .. 4624711 (+)
RNA-Seq ExpressionCmoCh13G003610
SyntenyCmoCh13G003610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGAGTTCGAAGGCTGCAGCAATTCTCTGGATATGAATTTTTTCTTCTTCAAATGTAACCGGAGACTTCGATGTAGTCCATCAGGAATTTTCTTTTGTAGTTGCACGCTCTACTAAGGGGCACATGTAAACCTGATCATAATATTTAAGATTCTCTCTTCGGAAGTCTATACTGCTTAGAAATGGAGGAAATGAGAAGAATTGCGTAATTTTCATTGCAATTGTCAGACAGGCACATCCTCAAATCAAACGGGTGCTGGTCGTCTGTAAGGTTAGTGGTTGTTGCTTTTCTGGTGAAGGGTACACACTTCATGATTAAATTTTCATTTTGGCTAAGAACACCATGTGTTCTTTTCGCATGTCAGTTACTGTTTTGTAATGTTCTGTTTCGTAGAAAGGGTTTCTGATTGAAAAGGATTTTTGTCAGTGTTATTCCTATTATATTATTCCTCATATGGAAACGCTCTCTTCAAAGGATATCTGCAGGTACTAATAGGTAGATTTGCAGGCTACAAAGGATATCTATCTAGAGCTCAAGAGTAGCTTGTTCGAGCTTTTTTGGGCTGAAAAGTTGTCTTTTCATGATTCCATCAAAGATGCTTCCTGGAGTCAATTATGGCAACAGGTAATTTAATTCTCCATGTCTTGGGGCTTTAAGAGGTTTTATATGAATGGGGTAGAAGTTTATAGTCATAGATGTTAGTTAGAGCCACTCCTATCAAGCAGTTGTCTGGTAAGAATTCCTTAGTTAGAAGTTTAGAAAAACAGTGGCATCCCACTGAAAGAGAATTGGTTTTGGATGCGTTTTGGTGTGTTTGTAGTATTCTATCATAATCAGAGTCAAGTTTGACTGTTACCATTTTGGTATATGTTTAATTCTATTCCATCATGCTTCTTTTGTGACTGCCTAACCTACCTTCCTAATGTCCTCTCCCTTCCCCTTTGTACCTAAAAGCTCAAGACTTCCATCTCGATTGGTTTTTTATCTGATTCATGAATCTCGTCGTATATTACAACCTGTTCGATATGTAATTCGACATTATATTTCTTTTTATTTTTGAAAATTTTGCTTGTTTTCTTGAAGTTGAAGTAGAAGTCAATGTCTAGAAAGAAAGCATATGGTTTGGAATGACAGTAGTAGTAGTATTGTGGCCGTAGAGATTAGGACAGAGAGCAATGATAAGAAAATGTCATTAAAATTGATATGGGAAGATGGTGATGATGATGACTGA

mRNA sequence

ATGGTTGGAGTTCGAAGGCTGCAGCAATTCTCTGGATATGAATTTTTTCTTCTTCAAATATTCTCTCTTCGGAAGTCTATACTGCTTAGAAATGGAGGAAATGAGAAGAATTGCGTAATTTTCATTGCAATTGTCAGACAGGCACATCCTCAAATCAAACGGGTGCTGGTCGTCTGTAAGGCTACAAAGGATATCTATCTAGAGCTCAAGAGTAGCTTGTTCGAGCTTTTTTGGGCTGAAAAGTTGTCTTTTCATGATTCCATCAAAGATGCTTCCTGGAGTCAATTATGGCAACAGTTGTCTGGTAAGAATTCCTTAGTTAGAAGTTTAGAAAAACAGTGGCATCCCACTGAAAGAGAATTGGTTTTGGATGCGTTTTGAAGTCAATGTCTAGAAAGAAAGCATATGGTTTGGAATGACAGTAGTAGTAGTATTGTGGCCGTAGAGATTAGGACAGAGAGCAATGATAAGAAAATGTCATTAAAATTGATATGGGAAGATGGTGATGATGATGACTGA

Coding sequence (CDS)

ATGGTTGGAGTTCGAAGGCTGCAGCAATTCTCTGGATATGAATTTTTTCTTCTTCAAATATTCTCTCTTCGGAAGTCTATACTGCTTAGAAATGGAGGAAATGAGAAGAATTGCGTAATTTTCATTGCAATTGTCAGACAGGCACATCCTCAAATCAAACGGGTGCTGGTCGTCTGTAAGGCTACAAAGGATATCTATCTAGAGCTCAAGAGTAGCTTGTTCGAGCTTTTTTGGGCTGAAAAGTTGTCTTTTCATGATTCCATCAAAGATGCTTCCTGGAGTCAATTATGGCAACAGTTGTCTGGTAAGAATTCCTTAGTTAGAAGTTTAGAAAAACAGTGGCATCCCACTGAAAGAGAATTGGTTTTGGATGCGTTTTGA

Protein sequence

MVGVRRLQQFSGYEFFLLQIFSLRKSILLRNGGNEKNCVIFIAIVRQAHPQIKRVLVVCKATKDIYLELKSSLFELFWAEKLSFHDSIKDASWSQLWQQLSGKNSLVRSLEKQWHPTERELVLDAF
Homology
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BLAST of CmoCh13G003610 vs. NCBI nr
Match: KAG6583689.1 (hypothetical protein SDJN03_19621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.9 bits (294), Expect = 6.5e-23
Identity = 62/77 (80.52%), Postives = 63/77 (81.82%), Query Frame = 0 

Query: 1  MVGVRRLQQFSGYEFFLLQIFSLRKSILLRNGGNEKNCVIFIAIVRQAHPQIKRVLVVCK 60
          MVGVRRLQQFSGYEFFLLQI          NGGNEKNC+IFIAIVRQAHPQIKRVLVVCK
Sbjct: 1  MVGVRRLQQFSGYEFFLLQI----------NGGNEKNCIIFIAIVRQAHPQIKRVLVVCK 60

Query: 61 ATKDIYLELKSSLFELF 78
          ATKDIYLELKS L   F
Sbjct: 61 ATKDIYLELKSKLVRAF 67

The following BLAST results are available for this feature:
BLAST of CmoCh13G003610 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G003610 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G003610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583689.16.5e-2380.52hypothetical protein SDJN03_19621, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh13G003610 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003610.1CmoCh13G003610.1mRNA