CmoCh13G003550 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G003550
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionsubtilisin-like protease SBT5.4
LocationCmo_Chr13: 4541733 .. 4542248 (+)
RNA-Seq ExpressionCmoCh13G003550
SyntenyCmoCh13G003550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAGAGCTGTGGCGGAGGGTCAAATTGGTTACGGTACGCTGGTTTGGACCGACGGCAAGCACTTTGTTAGGAGTCCAATTGTCGTTTCTTCTTGCTTTTTCTGAACCCATTTTGTTAGGAGAGATTACTAGATTTCAAGTTTTGTTTTCTGTGGCTGAAATCATATTGGTTTTCTTTTAGATATGAACTAGTATGAGGAATTCTTTCTTTTTATTTGAAACATTTCCCCTTTTTTCCTTTATAGTTTAATCAATTGTTTTAGTTTAACCCATCATGGAAACAAATCTCTTTTCATCTTTCTATTTCATTGAGCCTCTCTATGGGACGGTACCCAGATTTTTATGTCTTTAATGTGGATTGAAATTTACCCGACAAGAAATTTTGCTATCTTAGAATCGTTATAGTTATGGCTACCATTCACTGGGGCTGGCCGCCTGCTCCCTTGTTACCAGGTCATCAACTTCTTTGACTTTTTAGTATGGGCAGGCATCAGCCTCCATACATGGCCTTAA

mRNA sequence

ATGACCAGAGCTGTGGCGGAGGGTCAAATTGGTTACGGTACGCTGGTTTGGACCGACGGCAAGCACTTTGTTAGGAGTCCAATTGTCTTATGGCTACCATTCACTGGGGCTGGCCGCCTGCTCCCTTGTTACCAGGTCATCAACTTCTTTGACTTTTTAGTATGGGCAGGCATCAGCCTCCATACATGGCCTTAA

Coding sequence (CDS)

ATGACCAGAGCTGTGGCGGAGGGTCAAATTGGTTACGGTACGCTGGTTTGGACCGACGGCAAGCACTTTGTTAGGAGTCCAATTGTCTTATGGCTACCATTCACTGGGGCTGGCCGCCTGCTCCCTTGTTACCAGGTCATCAACTTCTTTGACTTTTTAGTATGGGCAGGCATCAGCCTCCATACATGGCCTTAA

Protein sequence

MTRAVAEGQIGYGTLVWTDGKHFVRSPIVLWLPFTGAGRLLPCYQVINFFDFLVWAGISLHTWP
Homology
BLAST of CmoCh13G003550 vs. ExPASy TrEMBL
Match: A0A6J1I7Q4 (subtilisin-like protease SBT5.4 OS=Cucurbita maxima OX=3661 GN=LOC111471617 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0

Query: 1   MTRAVAEGQIGYGTLVWTDGKHFVRSPIVL 31
           MT AVAEGQIGYGTL+WTDGKHFV+SPIV+
Sbjct: 709 MTGAVAEGQIGYGTLIWTDGKHFVKSPIVV 738

BLAST of CmoCh13G003550 vs. ExPASy TrEMBL
Match: A0A6J1EG71 (subtilisin-like protease SBT5.4 OS=Cucurbita moschata OX=3662 GN=LOC111434037 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0

Query: 1   MTRAVAEGQIGYGTLVWTDGKHFVRSPIVL 31
           MT A+AEGQIGYGTL+WTDGKHFVRSPIV+
Sbjct: 968 MTGAMAEGQIGYGTLIWTDGKHFVRSPIVV 997

BLAST of CmoCh13G003550 vs. ExPASy TrEMBL
Match: A0A6J1EG66 (subtilisin-like protease SBT5.4 OS=Cucurbita moschata OX=3662 GN=LOC111434032 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-06
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 1   MTRAVAEGQIGYGTLVWTDGKHFVRSPIVL 31
           MT AVAEGQIGYGTL+WTD KHFVRSPIV+
Sbjct: 742 MTGAVAEGQIGYGTLIWTDDKHFVRSPIVV 771

BLAST of CmoCh13G003550 vs. ExPASy TrEMBL
Match: A0A6J1EK27 (subtilisin-like protease SBT5.4 OS=Cucurbita moschata OX=3662 GN=LOC111434038 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-06
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 1   MTRAVAEGQIGYGTLVWTDGKHFVRSPIVL 31
           MT  VAEGQIGYGTL+WTDGKHFV+SPIV+
Sbjct: 734 MTGVVAEGQIGYGTLIWTDGKHFVKSPIVV 763

BLAST of CmoCh13G003550 vs. ExPASy TrEMBL
Match: A0A6J1EK22 (subtilisin-like protease SBT5.4 OS=Cucurbita moschata OX=3662 GN=LOC111434033 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-06
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 1   MTRAVAEGQIGYGTLVWTDGKHFVRSPIVL 31
           MT AVAEGQIGYGTL+WTD KHFVRSPIV+
Sbjct: 600 MTGAVAEGQIGYGTLIWTDDKHFVRSPIVV 629

BLAST of CmoCh13G003550 vs. NCBI nr
Match: KAG6583692.1 (Subtilisin-like protease 5.4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 7.4e-07
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 1   MTRAVAEGQIGYGTLVWTDGKHFVRSPIVLWLPF 35
           MT AVAEGQIGYGTL+WTDGKHFV+SPIV++  F
Sbjct: 151 MTGAVAEGQIGYGTLIWTDGKHFVKSPIVVYFGF 184

BLAST of CmoCh13G003550 vs. NCBI nr
Match: XP_022927102.1 (subtilisin-like protease SBT5.4 [Cucurbita moschata])

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0

Query: 1   MTRAVAEGQIGYGTLVWTDGKHFVRSPIVL 31
           MT A+AEGQIGYGTL+WTDGKHFVRSPIV+
Sbjct: 968 MTGAMAEGQIGYGTLIWTDGKHFVRSPIVV 997

BLAST of CmoCh13G003550 vs. NCBI nr
Match: XP_022973086.1 (subtilisin-like protease SBT5.4 [Cucurbita maxima])

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0

Query: 1   MTRAVAEGQIGYGTLVWTDGKHFVRSPIVL 31
           MT AVAEGQIGYGTL+WTDGKHFV+SPIV+
Sbjct: 709 MTGAVAEGQIGYGTLIWTDGKHFVKSPIVV 738

BLAST of CmoCh13G003550 vs. NCBI nr
Match: KAG6583686.1 (Subtilisin-like protease 5.4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 1   MTRAVAEGQIGYGTLVWTDGKHFVRSPIVLWL 33
           MT A+AEGQIGYGTL+WTDGKHFVRSPIV+ L
Sbjct: 569 MTGAMAEGQIGYGTLIWTDGKHFVRSPIVVSL 600

BLAST of CmoCh13G003550 vs. NCBI nr
Match: KAG6583681.1 (Subtilisin-like protease 5.4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.1 bits (144), Expect = 8.2e-06
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 1   MTRAVAEGQIGYGTLVWTDGKHFVRSPIVL 31
           MT AVAEGQIGYGTL+WTD KHFVRSPIV+
Sbjct: 733 MTGAVAEGQIGYGTLIWTDDKHFVRSPIVV 762

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1I7Q41.4e-0686.67subtilisin-like protease SBT5.4 OS=Cucurbita maxima OX=3661 GN=LOC111471617 PE=3... [more]
A0A6J1EG711.4e-0686.67subtilisin-like protease SBT5.4 OS=Cucurbita moschata OX=3662 GN=LOC111434037 PE... [more]
A0A6J1EG664.0e-0686.67subtilisin-like protease SBT5.4 OS=Cucurbita moschata OX=3662 GN=LOC111434032 PE... [more]
A0A6J1EK274.0e-0683.33subtilisin-like protease SBT5.4 OS=Cucurbita moschata OX=3662 GN=LOC111434038 PE... [more]
A0A6J1EK224.0e-0686.67subtilisin-like protease SBT5.4 OS=Cucurbita moschata OX=3662 GN=LOC111434033 PE... [more]
Match NameE-valueIdentityDescription
KAG6583692.17.4e-0779.41Subtilisin-like protease 5.4, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022927102.12.8e-0686.67subtilisin-like protease SBT5.4 [Cucurbita moschata][more]
XP_022973086.12.8e-0686.67subtilisin-like protease SBT5.4 [Cucurbita maxima][more]
KAG6583686.12.8e-0684.38Subtilisin-like protease 5.4, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6583681.18.2e-0686.67Subtilisin-like protease 5.4, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.2310coord: 1..31
e-value: 4.0E-5
score: 25.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003550.1CmoCh13G003550.1mRNA