CmoCh13G003380 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G003380
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Mediator of RNA polymerase II transcription subunit 11
Location	Cmo_Chr13: 4345698 .. 4348234 (-)
RNA-Seq Expression	CmoCh13G003380
Synteny	CmoCh13G003380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAATGATTGTGTTCAGTATCACTGGGTATTCGGGATTTTGGTGGTCGTTACGTAATGACAGTTAATTTCTCGTTAGATTGTTAGTTGAGTCGGTTAGGAGTCGGGAGTGTCGAGGAAGGATATTATTGCTGATTGATATCTCAATTTGTTACCATTTGGCTCACGTAACCGGGTTCCTAGCAGATTGTAGAGAATAATTAAAGAATAATTGTTGTGTGGCTGGTATGCTTTTTTAGTACTGTTCAAAGATGGGGCATCTTTATCAAAAGTGTCAAGTCAATGCAATCCTATATTTCACCTAAATCTTTGAATTATATTTGAGGAATAATGTGAAACATTTTGTCCTCCTTGAAATCAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCGTTCGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGTGAAAATGGAAGATTCTTGAGGTAAATGTCGCAGTGAGCTGCCAATCTAACTATTTTCCATTTTTCCCATACAATGTTGTAGAAACGTAGGTTGATGGGGGAAACTAGGTAGAGCTAATAGCATCCACTTATGACTAGTCGGCTCATACCAAAATCCTGCTGTATTCTTAAACTATCCATTGTTTTCCTTTTAATCTGTGGTCTCTTCTATATTTGATATAGGTCATGTCTTATTGGATGTATTCATTTTCTTTCATTTGTTTGCATCGAGGAGTTGCCGGCTGAGCTACGAAATCTCACATCGGTTGGGGAGGAGTACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTACCTAGCATACACGTTTTAAAAACCTTGTGGGGAAGCCTGAAAGGGAAATCCCAAAGAGGACAATATCGGTTGGTGGTGGGTTTGGACTATTATAAATGGTGTCAGAGCTAGACACCGGGCGATGTGCCAACAAGGAGGCTGAGCACCAAAGGGGGTGGACAAGAGGCGGTGTGCTAGCAAGGACGTTGGGCCTTGAAAGGGGGTGGATTGGTGAGTCCCACATCGATTGGAGAAGGGAACAAATGCCAGCAAAGACGCGGGGCCCTGAAGGAGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGTGGATTGTGAAATCCCACATCGATTGGGGAGGAGAACGAAACATTTTTTACAAGAGTGTGGAAACCTCTCTCGAGCAGACACGTTTTAAAACCTTGAGGGGGAAGCCCAAAAAAGAAAGTCTATAGAAGACAATATTTGCTAGCGGTAGGTTTAGGTCGTTACACGAATAAAGTCAAGTATTCAGAATTGAATTTTAATGTTCGAATGATTGAAGTAGAAACGCCTGCAGGGATTCTTAGACTGCTTTATCTGTTTTATGTGTTCTTGAGAGAATATTAGCAACACACTGTATATGCATACACTTTGTCTGGAGGAATTCTTTTTTTTTTTGTAGGCAGGCCTTATCTTTGTCACATACTATATACATCTCTCGTGTCGTGACTTTAATGACGAGCTTCATCGACCTATGAGGATAAGATTATCGACATCCTTAGGAGCATTCTGCAACTTGTAGTATCTAAGCATCCATTTCTAGTTCTTGTTTTTTTCTCGTTATTTGATGAATGTCATTACTGTCTATTATCTGAAAATACTTTCCTTCGAAGTTACACGAATAGATGTAACGATATTTGTCACTTGTCACATATGGTTGTAGTATCTCATTCTCATCATAAATCAAATGATCATTTGTAACTATTTAGAAGCACCCACACAAAAAATTGAGTCACAGTCGTTATTTTTTTGACATTGTTGTGAGGAATGTTCAAATTTGACGATTTTGACATCTACGATCGATGTCCATCACCCAAAAATGATTTTTGCTCCTGACCAGTTTATGTTCGACTAACATCGGG

mRNA sequence

ATGTGGAATGATTGTGTTCAGTATCACTGGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCGTTCGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGTGAAAATGGAAGATTCTTGAGGCAGGCCTTATCTTTGTCACATACTATATACATCTCTCGTGTCGTGACTTTAATGACGAGCTTCATCGACCTATGAGGATAAGATTATCGACATCCTTAGGAGCATTCTGCAACTTGTAGTATCTAAGCATCCATTTCTAGTTCTTGTTTTTTTCTCGTTATTTGATGAATGTCATTACTGTCTATTATCTGAAAATACTTTCCTTCGAAGTTACACGAATAGATGTAACGATATTTGTCACTTGTCACATATGGTTGTAGTATCTCATTCTCATCATAAATCAAATGATCATTTGTAACTATTTAGAAGCACCCACACAAAAAATTGAGTCACAGTCGTTATTTTTTTGACATTGTTGTGAGGAATGTTCAAATTTGACGATTTTGACATCTACGATCGATGTCCATCACCCAAAAATGATTTTTGCTCCTGACCAGTTTATGTTCGACTAACATCGGG

Coding sequence (CDS)

ATGTGGAATGATTGTGTTCAGTATCACTGGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCGTTCGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGTGAAAATGGAAGATTCTTGA

Protein sequence

MWNDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS

Homology

[Close]

BLAST of CmoCh13G003380 vs. ExPASy Swiss-Prot
Match: Q6ID77 (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana OX=3702 GN=MED11 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-17
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 11  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY 65
           DIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 58  DIQVTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]

BLAST of CmoCh13G003380 vs. ExPASy TrEMBL
Match: A0A6J1EPI6 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 3   NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 62
           ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID
Sbjct: 86  SEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 145

Query: 63  EYQVKMEDS 72
           EYQVKMEDS
Sbjct: 146 EYQVKMEDS 154

[Close]

BLAST of CmoCh13G003380 vs. ExPASy TrEMBL
Match: A0A6J1EPJ1 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 3   NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 62
           ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID
Sbjct: 50  SEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 109

Query: 63  EYQVKMEDS 72
           EYQVKMEDS
Sbjct: 110 EYQVKMEDS 118

[Close]

BLAST of CmoCh13G003380 vs. ExPASy TrEMBL
Match: A0A1S3B5G7 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 GN=LOC103486032 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.9e-27
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 3   NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 62
           ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID
Sbjct: 50  SEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 109

Query: 63  EYQVKMEDS 72
           +YQVKMEDS
Sbjct: 110 DYQVKMEDS 118

[Close]

BLAST of CmoCh13G003380 vs. ExPASy TrEMBL
Match: A0A6J1CKY4 (Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX=3673 GN=LOC111012572 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 3   NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 62
           ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID
Sbjct: 50  SEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 109

Query: 63  EYQVKMEDS 72
           EYQVK+ED+
Sbjct: 110 EYQVKVEDA 118

[Close]

BLAST of CmoCh13G003380 vs. ExPASy TrEMBL
Match: A0A0A0L450 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=3659 GN=MED11 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 2   WNDCVQYH---WDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMK 61
           W   +++H    DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMK
Sbjct: 68  WRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMK 127

Query: 62  QTIDEYQVKMEDS 72
           QTID+YQVK+EDS
Sbjct: 128 QTIDDYQVKIEDS 140

[Close]

BLAST of CmoCh13G003380 vs. NCBI nr
Match: XP_022927635.1 (mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata] >XP_022927636.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata] >XP_022927637.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata] >XP_022927638.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata])

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 3   NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 62
           ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID
Sbjct: 86  SEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 145

Query: 63  EYQVKMEDS 72
           EYQVKMEDS
Sbjct: 146 EYQVKMEDS 154

[Close]

BLAST of CmoCh13G003380 vs. NCBI nr
Match: XP_022927640.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >XP_022927641.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >KAG6583673.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 3   NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 62
           ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID
Sbjct: 50  SEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 109

Query: 63  EYQVKMEDS 72
           EYQVKMEDS
Sbjct: 110 EYQVKMEDS 118

[Close]

BLAST of CmoCh13G003380 vs. NCBI nr
Match: XP_023520390.1 (mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520391.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 3   NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 62
           ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID
Sbjct: 86  SEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 145

Query: 63  EYQVKMEDS 72
           EYQVKMED+
Sbjct: 146 EYQVKMEDA 154

[Close]

BLAST of CmoCh13G003380 vs. NCBI nr
Match: XP_008442051.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_008442052.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_016899531.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 3   NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 62
           ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID
Sbjct: 50  SEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 109

Query: 63  EYQVKMEDS 72
           +YQVKMEDS
Sbjct: 110 DYQVKMEDS 118

[Close]

BLAST of CmoCh13G003380 vs. NCBI nr
Match: XP_023520392.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520393.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 3   NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 62
           ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID
Sbjct: 50  SEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 109

Query: 63  EYQVKMEDS 72
           EYQVKMED+
Sbjct: 110 EYQVKMEDA 118

[Close]

BLAST of CmoCh13G003380 vs. TAIR 10
Match: AT3G01435.1 (Expressed protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-18
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 11  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY 65
           DIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 58  DIQVTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

The following BLAST results are available for this feature:

BLAST of CmoCh13G003380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6ID77	1.4e-17	70.37	Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana O...	[more]

BLAST of CmoCh13G003380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EPI6	2.6e-27	89.86	Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=...	[more]
A0A6J1EPJ1	2.6e-27	89.86	Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=...	[more]
A0A1S3B5G7	5.9e-27	88.41	Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1CKY4	1.7e-26	86.96	Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX...	[more]
A0A0A0L450	1.7e-26	82.19	Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=365...	[more]

BLAST of CmoCh13G003380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927635.1	5.5e-27	89.86	mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita mos...	[more]
XP_022927640.1	5.5e-27	89.86	mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita mos...	[more]
XP_023520390.1	1.2e-26	88.41	mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita pep...	[more]
XP_008442051.1	1.2e-26	88.41	PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]...	[more]
XP_023520392.1	1.2e-26	88.41	mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pep...	[more]

BLAST of CmoCh13G003380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01435.1	1.0e-18	70.37	Expressed protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..71
None	No IPR available	PANTHER	PTHR22890:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11	coord: 11..67
IPR019404	Mediator complex, subunit Med11	PANTHER	PTHR22890	UNCHARACTERIZED	coord: 11..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003380.1	CmoCh13G003380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity