CmoCh13G003250 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G003250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC111469948
Location	Cmo_Chr13: 3971117 .. 3971413 (+)
RNA-Seq Expression	CmoCh13G003250
Synteny	CmoCh13G003250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAAAAGCTTCAAGCATTGAAACAGGGACGCAAATCTGTGGAGGATTCTTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCACGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGTCTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACGAAGGTCTCAACGGTATTTTTCTAAAAACTTTTCTCAATTATACTTCTACATGGAAAAAGGATAG

mRNA sequence

ATGGCACAAAAGCTTCAAGCATTGAAACAGGGACGCAAATCTGTGGAGGATTCTTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCACGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGTCTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACGAAGGTCTCAACGGTATTTTTCTAAAAACTTTTCTCAATTATACTTCTACATGGAAAAAGGATAG

Coding sequence (CDS)

ATGGCACAAAAGCTTCAAGCATTGAAACAGGGACGCAAATCTGTGGAGGATTCTTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCACGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGTCTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACGAAGGTCTCAACGGTATTTTTCTAAAAACTTTTCTCAATTATACTTCTACATGGAAAAAGGATAG

Protein sequence

MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNFSQLYFYMEKG

Homology

[Close]

BLAST of CmoCh13G003250 vs. ExPASy TrEMBL
Match: A0A6J1I8S0 (uncharacterized protein LOC111472489 OS=Cucurbita maxima OX=3661 GN=LOC111472489 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 9.6e-36
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1   MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYS 60
           MAQKLQALKQGRKSVED YKEMDTLMDRLELDEDMEALMARFLNGLNTEIADK+DLQPYS
Sbjct: 38  MAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYS 97

Query: 61  NIEELLHIAIKIERQIQRRSQRYFSKNF 89
           NIEELLHIAIKIERQIQRRSQRY SK F
Sbjct: 98  NIEELLHIAIKIERQIQRRSQRYSSKTF 125

[Close]

BLAST of CmoCh13G003250 vs. ExPASy TrEMBL
Match: A0A6J1G2Q3 (uncharacterized protein LOC111450286 OS=Cucurbita moschata OX=3662 GN=LOC111450286 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.8e-35
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1   MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYS 60
           MAQKLQALKQGRKSVED YKEMDTLMDRLELDEDMEALMARFLNGLN EIADK+DLQPYS
Sbjct: 38  MAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNIEIADKTDLQPYS 97

Query: 61  NIEELLHIAIKIERQIQRRSQRYFSKNF 89
           NIEELLHIAIKIERQIQRRSQRY SK F
Sbjct: 98  NIEELLHIAIKIERQIQRRSQRYSSKTF 125

[Close]

BLAST of CmoCh13G003250 vs. ExPASy TrEMBL
Match: A0A6J1EVV9 (uncharacterized protein LOC111436463 OS=Cucurbita moschata OX=3662 GN=LOC111436463 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.8e-35
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1   MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYS 60
           MAQKLQALKQGRKSVED YKEMDTLMDRLELDEDMEALMARFLNGLN EIADK+DLQPYS
Sbjct: 38  MAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNIEIADKTDLQPYS 97

Query: 61  NIEELLHIAIKIERQIQRRSQRYFSKNF 89
           NIEELLHIAIKIERQIQRRSQRY SK F
Sbjct: 98  NIEELLHIAIKIERQIQRRSQRYSSKTF 125

[Close]

BLAST of CmoCh13G003250 vs. ExPASy TrEMBL
Match: A0A6J1EQJ1 (uncharacterized protein LOC111436530 OS=Cucurbita moschata OX=3662 GN=LOC111436530 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.8e-35
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1   MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYS 60
           MAQKLQALKQGRKSVED YKEMDTLMDRLELDEDMEALMARFLNGLN EIADK+DLQPYS
Sbjct: 38  MAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNIEIADKTDLQPYS 97

Query: 61  NIEELLHIAIKIERQIQRRSQRYFSKNF 89
           NIEELLHIAIKIERQIQRRSQRY SK F
Sbjct: 98  NIEELLHIAIKIERQIQRRSQRYSSKTF 125

[Close]

BLAST of CmoCh13G003250 vs. ExPASy TrEMBL
Match: A0A6J1I7T3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111469948 OS=Cucurbita maxima OX=3661 GN=LOC111469948 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.0e-33
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1   MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYS 60
           MAQKLQALKQGRKSVED YKEMDTLMD+LELDEDMEALMA FLNGLNTEIA+K+DLQPYS
Sbjct: 112 MAQKLQALKQGRKSVEDYYKEMDTLMDQLELDEDMEALMAWFLNGLNTEIAEKTDLQPYS 171

Query: 61  NIEELLHIAIKIERQIQRRSQRYFSKNF 89
           NIEELLHI IKIERQIQRRSQRY SK F
Sbjct: 172 NIEELLHIVIKIERQIQRRSQRYSSKTF 199

[Close]

BLAST of CmoCh13G003250 vs. NCBI nr
Match: XP_022973897.1 (uncharacterized protein LOC111472489, partial [Cucurbita maxima])

HSP 1 Score: 159.1 bits (401), Expect = 2.0e-35
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1   MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYS 60
           MAQKLQALKQGRKSVED YKEMDTLMDRLELDEDMEALMARFLNGLNTEIADK+DLQPYS
Sbjct: 38  MAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYS 97

Query: 61  NIEELLHIAIKIERQIQRRSQRYFSKNF 89
           NIEELLHIAIKIERQIQRRSQRY SK F
Sbjct: 98  NIEELLHIAIKIERQIQRRSQRYSSKTF 125

[Close]

BLAST of CmoCh13G003250 vs. NCBI nr
Match: XP_023530046.1 (uncharacterized protein LOC111792716 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYS 60
          MAQKLQALKQGRKSVED YKEMDTLMDRL+LDEDMEALMARFLNGLNTEIADK+DLQPYS
Sbjct: 1  MAQKLQALKQGRKSVEDYYKEMDTLMDRLDLDEDMEALMARFLNGLNTEIADKTDLQPYS 60

Query: 61 NIEELLHIAIKIERQIQRRSQRYFSKNF 89
          NIEELLHIAIKIERQIQRRSQRY SK F
Sbjct: 61 NIEELLHIAIKIERQIQRRSQRYSSKTF 88

[Close]

BLAST of CmoCh13G003250 vs. NCBI nr
Match: XP_023520835.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1   MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYS 60
           MAQKLQALKQGRKSVED YKEMDTLMDRL+LDEDMEALMARFLNGLNTEIADK+DLQPYS
Sbjct: 200 MAQKLQALKQGRKSVEDYYKEMDTLMDRLDLDEDMEALMARFLNGLNTEIADKTDLQPYS 259

Query: 61  NIEELLHIAIKIERQIQRRSQRYFSKNF 89
           NIEELLHIAIKIERQIQRRSQRY SK F
Sbjct: 260 NIEELLHIAIKIERQIQRRSQRYSSKTF 287

[Close]

BLAST of CmoCh13G003250 vs. NCBI nr
Match: XP_023553652.1 (uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1   MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYS 60
           MAQKLQALKQGRKSVED YKEMDTLMDRL+LDEDMEALMARFLNGLNTEIADK+DLQPYS
Sbjct: 200 MAQKLQALKQGRKSVEDYYKEMDTLMDRLDLDEDMEALMARFLNGLNTEIADKTDLQPYS 259

Query: 61  NIEELLHIAIKIERQIQRRSQRYFSKNF 89
           NIEELLHIAIKIERQIQRRSQRY SK F
Sbjct: 260 NIEELLHIAIKIERQIQRRSQRYSSKTF 287

[Close]

BLAST of CmoCh13G003250 vs. NCBI nr
Match: XP_023521183.1 (uncharacterized protein LOC111784872 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1   MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYS 60
           MAQKLQALKQGRKSVED YKEMDTLMDRL+LDEDMEALMARFLNGLNTEIADK+DLQPYS
Sbjct: 35  MAQKLQALKQGRKSVEDYYKEMDTLMDRLDLDEDMEALMARFLNGLNTEIADKTDLQPYS 94

Query: 61  NIEELLHIAIKIERQIQRRSQRYFSKNF 89
           NIEELLHIAIKIERQIQRRSQRY SK F
Sbjct: 95  NIEELLHIAIKIERQIQRRSQRYSSKTF 122

The following BLAST results are available for this feature:

BLAST of CmoCh13G003250 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G003250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I8S0	9.6e-36	95.45	uncharacterized protein LOC111472489 OS=Cucurbita maxima OX=3661 GN=LOC111472489...	[more]
A0A6J1G2Q3	4.8e-35	94.32	uncharacterized protein LOC111450286 OS=Cucurbita moschata OX=3662 GN=LOC1114502...	[more]
A0A6J1EVV9	4.8e-35	94.32	uncharacterized protein LOC111436463 OS=Cucurbita moschata OX=3662 GN=LOC1114364...	[more]
A0A6J1EQJ1	4.8e-35	94.32	uncharacterized protein LOC111436530 OS=Cucurbita moschata OX=3662 GN=LOC1114365...	[more]
A0A6J1I7T3	2.0e-33	90.91	LOW QUALITY PROTEIN: uncharacterized protein LOC111469948 OS=Cucurbita maxima OX...	[more]

BLAST of CmoCh13G003250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973897.1	2.0e-35	95.45	uncharacterized protein LOC111472489, partial [Cucurbita maxima]	[more]
XP_023530046.1	4.4e-35	94.32	uncharacterized protein LOC111792716 [Cucurbita pepo subsp. pepo]	[more]
XP_023520835.1	4.4e-35	94.32	LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp....	[more]
XP_023553652.1	4.4e-35	94.32	uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo]	[more]
XP_023521183.1	4.4e-35	94.32	uncharacterized protein LOC111784872 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh13G003250 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 2..48 e-value: 5.4E-8 score: 33.0
None	No IPR available	PANTHER	PTHR35046	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 2..85
None	No IPR available	PANTHER	PTHR35046:SF6	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 2..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003250.1	CmoCh13G003250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding