CmoCh13G003200 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G003200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Location	Cmo_Chr13: 3524170 .. 3525276 (-)
RNA-Seq Expression	CmoCh13G003200
Synteny	CmoCh13G003200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCTGATGAACAAAGTGTTTAGAGAGTTTTTAGACAACTTCATGATCGTCTTCATCGATGATATCCTGGTGTACTCCAAGACGGGGGAACAACACGAGGAACATCTCCGGAAAGTGCTGACCACTCCGAGAACGAACAAGTTGTTTGCAAAGTTCTCCAAGTGTGAATTCTGGGCAGAACAGGTGGGATTTCTTGGGCATGTAGTTTTAAGCATGGGAATCACCGTAGACCCAACAAAGATTGAAGCGGTGACGAATTGGCCTCGCCCGACCACAGTGACGGAAGTACGAAGTTTCCTTGGACTAGTAGGGTATTATCGGCGGTTTGTGCAGGATTTCGCGAAGATCGCCACCCCCCTCACTGAGTTAACCAAGAAAGGAAAGTCGTTCACCTGGAATGATCAGTGTGAGGTTAGTTTCAAAGAACTCAAACAGAGGTTAGTATCTGACGCGGTACTCACTATATCGTCAGGAGATGGAGGCTTTGTAGTATACAGCGATGCTTCAAAAAGGGGGTTAGGATGTGTCCTTATGCAACGTGGGAAGGTTATTGCCTATGTTTCACGTCAACTAAAAGAATACGAGCGAAACTATCCCACCCACGACCTAGAACTCGCAGCAGTGGTATTTGCATTGAAGATTTGGAGACACTACCTTTATAGAGAAAGGACCCAAATTTTCACTGACCACAAGAGCCTTAAATACTTCTTTACTCAGAAGGAGTTGAACGTGAGACAACGCAGGTGGTTGGAGTTGGTTAAAGATTATGATGTGGAGATACTCTATCACCCGGGAAAGGCGAATGTGGTAGCTGATGCGTTGAGCCAAAAATTAGCACACACGTCTGCCCTAATCACTACACAAAAAGCGATCCAGCAGGATCTAGAACGCGCCGAGGTAGCAGTGGCCATGGGGGAAGTCGCCGCTCAATTGGCCCAGTTAACGATACAACCAACCTTGAGGCAACGTCTTATTGATAAACAGCATGGTGATCCGGATTTGGTTGGAAAAAGACGTTTGATAGATGCTAATCAGACAGAGGAGTTTTCATTGACAGCTGATGGGGGGGCTCTTGTACCATGGGCGGTTGTGTGTGCCAAATGA

mRNA sequence

ATGGGGCTGATGAACAAAGTGTTTAGAGAGTTTTTAGACAACTTCATGATCGTCTTCATCGATGATATCCTGGTGTACTCCAAGACGGGGGAACAACACGAGGAACATCTCCGGAAAGTGCTGACCACTCCGAGAACGAACAAGTTGTTTGCAAAGTTCTCCAAGTGTGAATTCTGGGCAGAACAGGTGGGATTTCTTGGGCATGTAGTTTTAAGCATGGGAATCACCGTAGACCCAACAAAGATTGAAGCGGTGACGAATTGGCCTCGCCCGACCACAGTGACGGAAGTACGAAGTTTCCTTGGACTAGTAGGGTATTATCGGCGGTTTGTGCAGGATTTCGCGAAGATCGCCACCCCCCTCACTGAGTTAACCAAGAAAGGAAAGTCGTTCACCTGGAATGATCAGTGTGAGGTTAGTTTCAAAGAACTCAAACAGAGGTTAGTATCTGACGCGGTACTCACTATATCGTCAGGAGATGGAGGCTTTGTAGTATACAGCGATGCTTCAAAAAGGGGGTTAGGATGTGTCCTTATGCAACGTGGGAAGGTTATTGCCTATGTTTCACGTCAACTAAAAGAATACGAGCGAAACTATCCCACCCACGACCTAGAACTCGCAGCAGTGGTATTTGCATTGAAGATTTGGAGACACTACCTTTATAGAGAAAGGACCCAAATTTTCACTGACCACAAGAGCCTTAAATACTTCTTTACTCAGAAGGAGTTGAACGTGAGACAACGCAGGTGGTTGGAGTTGGTTAAAGATTATGATGTGGAGATACTCTATCACCCGGGAAAGGCGAATGTGGTAGCTGATGCGTTGAGCCAAAAATTAGCACACACGTCTGCCCTAATCACTACACAAAAAGCGATCCAGCAGGATCTAGAACGCGCCGAGGTAGCAGTGGCCATGGGGGAAGTCGCCGCTCAATTGGCCCAGTTAACGATACAACCAACCTTGAGGCAACGTCTTATTGATAAACAGCATGGTGATCCGGATTTGGTTGGAAAAAGACGTTTGATAGATGCTAATCAGACAGAGGAGTTTTCATTGACAGCTGATGGGGGGGCTCTTGTACCATGGGCGGTTGTGTGTGCCAAATGA

Coding sequence (CDS)

ATGGGGCTGATGAACAAAGTGTTTAGAGAGTTTTTAGACAACTTCATGATCGTCTTCATCGATGATATCCTGGTGTACTCCAAGACGGGGGAACAACACGAGGAACATCTCCGGAAAGTGCTGACCACTCCGAGAACGAACAAGTTGTTTGCAAAGTTCTCCAAGTGTGAATTCTGGGCAGAACAGGTGGGATTTCTTGGGCATGTAGTTTTAAGCATGGGAATCACCGTAGACCCAACAAAGATTGAAGCGGTGACGAATTGGCCTCGCCCGACCACAGTGACGGAAGTACGAAGTTTCCTTGGACTAGTAGGGTATTATCGGCGGTTTGTGCAGGATTTCGCGAAGATCGCCACCCCCCTCACTGAGTTAACCAAGAAAGGAAAGTCGTTCACCTGGAATGATCAGTGTGAGGTTAGTTTCAAAGAACTCAAACAGAGGTTAGTATCTGACGCGGTACTCACTATATCGTCAGGAGATGGAGGCTTTGTAGTATACAGCGATGCTTCAAAAAGGGGGTTAGGATGTGTCCTTATGCAACGTGGGAAGGTTATTGCCTATGTTTCACGTCAACTAAAAGAATACGAGCGAAACTATCCCACCCACGACCTAGAACTCGCAGCAGTGGTATTTGCATTGAAGATTTGGAGACACTACCTTTATAGAGAAAGGACCCAAATTTTCACTGACCACAAGAGCCTTAAATACTTCTTTACTCAGAAGGAGTTGAACGTGAGACAACGCAGGTGGTTGGAGTTGGTTAAAGATTATGATGTGGAGATACTCTATCACCCGGGAAAGGCGAATGTGGTAGCTGATGCGTTGAGCCAAAAATTAGCACACACGTCTGCCCTAATCACTACACAAAAAGCGATCCAGCAGGATCTAGAACGCGCCGAGGTAGCAGTGGCCATGGGGGAAGTCGCCGCTCAATTGGCCCAGTTAACGATACAACCAACCTTGAGGCAACGTCTTATTGATAAACAGCATGGTGATCCGGATTTGGTTGGAAAAAGACGTTTGATAGATGCTAATCAGACAGAGGAGTTTTCATTGACAGCTGATGGGGGGGCTCTTGTACCATGGGCGGTTGTGTGTGCCAAATGA

Protein sequence

MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWAEQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATPLTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQRGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQKELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAEVAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGALVPWAVVCAK

Homology

[Close]

BLAST of CmoCh13G003200 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-53
Identity = 115/294 (39.12%), Postives = 173/294 (58.84%), Query Frame = 0


Query: 4   MNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWAEQV 63
           MN + R  L+   +V++DDI+V+S + ++H + L  V        L  +  KCEF  ++ 
Sbjct: 349 MNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQET 408

Query: 64  GFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATPLTE 123
            FLGHV+   GI  +P KIEA+  +P PT   E+++FLGL GYYR+F+ +FA IA P+T+
Sbjct: 409 TFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTK 468

Query: 124 LTKKG-KSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQRG 183
             KK  K  T N + + +FK+LK  +  D +L +      F + +DAS   LG VL Q G
Sbjct: 469 CLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDG 528

Query: 184 KVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQKE 243
             ++Y+SR L E+E NY T + EL A+V+A K +RHYL     +I +DH+ L + +  K+
Sbjct: 529 HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKD 588

Query: 244 LNVRQRRWLELVKDYDVEILYHPGKANVVADALSQ-KLAHTSALITTQKAIQQD 296
            N +  RW   + ++D +I Y  GK N VADALS+ KL  T     TQ + ++D
Sbjct: 589 PNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAEED 642

[Close]

BLAST of CmoCh13G003200 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.5e-50
Identity = 107/294 (36.39%), Postives = 171/294 (58.16%), Query Frame = 0


Query: 4   MNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWAEQV 63
           MN + R  L+   +V++DDI+++S +  +H   ++ V T      L  +  KCEF  ++ 
Sbjct: 348 MNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEA 407

Query: 64  GFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATPLTE 123
            FLGH+V   GI  +P K++A+ ++P PT   E+R+FLGL GYYR+F+ ++A IA P+T 
Sbjct: 408 NFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTS 467

Query: 124 -LTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQRG 183
            L K+ K  T   +   +F++LK  ++ D +L +   +  FV+ +DAS   LG VL Q G
Sbjct: 468 CLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNG 527

Query: 184 KVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQKE 243
             I+++SR L ++E NY   + EL A+V+A K +RHYL   +  I +DH+ L++    KE
Sbjct: 528 HPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKE 587

Query: 244 LNVRQRRWLELVKDYDVEILYHPGKANVVADALSQ-KLAHTSALITTQKAIQQD 296
              +  RW   + +Y  +I Y  GK N VADALS+ K+        TQ + ++D
Sbjct: 588 PGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIEENHHSEATQHSAEED 641

[Close]

BLAST of CmoCh13G003200 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-49
Identity = 113/309 (36.57%), Postives = 175/309 (56.63%), Query Frame = 0


Query: 3   LMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWAEQ 62
           +++ + RE +     V+IDDI+V+S+  + H ++LR VL +     L     K  F   Q
Sbjct: 264 MIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQ 323

Query: 63  VGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATPLT 122
           V FLG++V + GI  DP K+ A++  P PT+V E++ FLG+  YYR+F+QD+AK+A PLT
Sbjct: 324 VEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLT 383

Query: 123 ELT-------KKGKS----FTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASK 182
            LT       K  +S     T ++    SF +LK  L S  +L        F + +DAS 
Sbjct: 384 NLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASN 443

Query: 183 RGLGCVLMQ----RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERT-Q 242
             +G VL Q    R + IAY+SR L + E NY T + E+ A++++L   R YLY   T +
Sbjct: 444 WAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIK 503

Query: 243 IFTDHKSLKYFFTQKELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALI 296
           ++TDH+ L +    +  N + +RW   +++Y+ E++Y PGK+NVVADALS+     + L 
Sbjct: 504 VYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIPPQLNQLS 563

[Close]

BLAST of CmoCh13G003200 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-45
Identity = 101/288 (35.07%), Postives = 158/288 (54.86%), Query Frame = 0


Query: 4   MNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWAEQV 63
           ++ V RE +     V++DD++++S+    H  H+  VL       +     K  F+ E V
Sbjct: 324 LDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESV 383

Query: 64  GFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATPLTE 123
            +LG +V   G   DP K++A+  +P P  V +VRSFLGL  YYR F++DFA IA P+T+
Sbjct: 384 EYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITD 443

Query: 124 LTK-----------KGKSFTWNDQCEVSFKELKQRLVS-DAVLTISSGDGGFVVYSDASK 183
           + K           K     +N+    +F+ L+  L S D +L        F + +DAS 
Sbjct: 444 ILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASA 503

Query: 184 RGLGCVLMQRGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRER-TQIFTD 243
            G+G VL Q G+ I  +SR LK+ E+NY T++ EL A+V+AL   +++LY  R   IFTD
Sbjct: 504 SGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTD 563

Query: 244 HKSLKYFFTQKELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQK 279
           H+ L +    +  N + +RW   +  ++ ++ Y PGK N VADALS++
Sbjct: 564 HQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQ 611

[Close]

BLAST of CmoCh13G003200 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.3e-39
Identity = 95/291 (32.65%), Postives = 153/291 (52.58%), Query Frame = 0


Query: 4   MNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWAEQV 63
           +N +  E  ++ ++ ++DDIL++SK+  +H +H++ VL   +   L    +KCEF   QV
Sbjct: 549 INTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQV 608

Query: 64  GFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATPLTE 123
            F+G+ +   G T     I+ V  W +P    E+R FLG V Y R+F+   +++  PL  
Sbjct: 609 KFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNN 668

Query: 124 LTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQRGK 183
           L KK   + W      + + +KQ LVS  VL         ++ +DAS   +G VL Q+  
Sbjct: 669 LLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHD 728

Query: 184 -----VIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYR--ERTQIFTDHKSLKY 243
                 + Y S ++ + + NY   D E+ A++ +LK WRHYL    E  +I TDH++L  
Sbjct: 729 DDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIG 788

Query: 244 FFTQKE--LNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSAL 286
             T +    N R  RW   ++D++ EI Y PG AN +ADALS+ +  T  +
Sbjct: 789 RITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPI 839

[Close]

BLAST of CmoCh13G003200 vs. ExPASy TrEMBL
Match: A0A5A7TSQ8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00170 PE=4 SV=1)

HSP 1 Score: 543.1 bits (1398), Expect = 8.9e-151
Identity = 262/359 (72.98%), Postives = 307/359 (85.52%), Query Frame = 0


Query: 1    MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
            M LMN+VFREFLD F+IVFIDDIL+YSKT  +HEEHLR VL T R NKL+AKFSKCEFW 
Sbjct: 2411 MNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 2470

Query: 61   EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
            +QV FLGHVV   G++VDP KIEAVT W RP+TV+EVRSFLGL GYYRRFV++F++IATP
Sbjct: 2471 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 2530

Query: 121  LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
            LT+LT+KG  F W+  CE SF+ LKQ+LV+  VLT+  G G FV+YSDASK+GLGCVLMQ
Sbjct: 2531 LTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQ 2590

Query: 181  RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
            +GKV+AY SRQLK +E+NYPTHDLELAAVVFALKIWRHYLY E+ QIFTDHKSLKYFFTQ
Sbjct: 2591 QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQ 2650

Query: 241  KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
            KELN+RQRRWLELVKDYD EILYHPGKANVVADALS+K++H++ALIT Q  + +DLER E
Sbjct: 2651 KELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERVE 2710

Query: 301  VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGAL 360
            +AV++G V  QLAQLT+QPTLRQR+ID Q  DP LV KR L +A QT+EFSL++DGG L
Sbjct: 2711 IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTDEFSLSSDGGLL 2769

[Close]

BLAST of CmoCh13G003200 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 542.7 bits (1397), Expect = 1.2e-150
Identity = 263/359 (73.26%), Postives = 307/359 (85.52%), Query Frame = 0


Query: 1    MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
            M LMN+VFREFLD F+IVFIDDIL+YSKT  +HEEHLR VL T R NKL+AKFSKCEFW 
Sbjct: 960  MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 1019

Query: 61   EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
            +QV FLGHVV   G++VDP KIEAVT W RP+TV+EVRSFLGL GYYRRFV++F++IATP
Sbjct: 1020 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 1079

Query: 121  LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
            LT+LT+KG  F W+  CE SF+ LKQ+LV+  VLT+  G G FV+YSDASK+GLGCVLMQ
Sbjct: 1080 LTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQ 1139

Query: 181  RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
            +GKV+AY SRQLK +E+NYPTHDLELAAVVFALKIWRHYLY E+ QIFTDHKSLKYFFTQ
Sbjct: 1140 QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQ 1199

Query: 241  KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
            KELN+RQRRWLELVKDYD EILYHPGKANVVADALS+K++H++ALIT Q  + +DLERAE
Sbjct: 1200 KELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAE 1259

Query: 301  VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGAL 360
            +AV++G V  QLAQLT+QPTLRQR+ID Q  DP LV KR L +A QT EFSL++DGG L
Sbjct: 1260 IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLL 1318

[Close]

BLAST of CmoCh13G003200 vs. ExPASy TrEMBL
Match: Q84KB0 (Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 2.0e-150
Identity = 263/359 (73.26%), Postives = 306/359 (85.24%), Query Frame = 0


Query: 1   MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
           M LMN+VFREFLD F+IVFIDDIL+YSKT  +HEEHLR VL T R NKL+AKFSKCEFW 
Sbjct: 127 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 186

Query: 61  EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
           +QV FLGHVV   G++VDP KIEAVT W RP+TV+EVRSFLGL GYYRRFV++F++IATP
Sbjct: 187 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 246

Query: 121 LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
           LT+LT+KG  F W+  CE SF+ LKQ+LV+  VLT+  G G FV+YSDASK+GLGCVLMQ
Sbjct: 247 LTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQ 306

Query: 181 RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
           +GKV+AY SRQLK +E+NYPTHDLELAAVVFALKIWRHYLY E+ QIFTDHKSLKYFFTQ
Sbjct: 307 QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQ 366

Query: 241 KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
           KELN+RQRRWLELVKDYD EILYHPGKANVVADALS+K++H++ALIT Q  + +DLERAE
Sbjct: 367 KELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAE 426

Query: 301 VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGAL 360
           +AV +G V  QLAQLT+QPTLRQR+ID Q  DP LV KR L +A QT EFSL++DGG L
Sbjct: 427 IAVLVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLL 485

[Close]

BLAST of CmoCh13G003200 vs. ExPASy TrEMBL
Match: A0A5A7UV42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G00570 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 2.6e-150
Identity = 261/359 (72.70%), Postives = 307/359 (85.52%), Query Frame = 0


Query: 1   MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
           M LMN+VFREFLD F+IVFIDDIL+YSKT  +HEEHLRKVL T R NKL+AKFSKCEFW 
Sbjct: 484 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRKVLQTLRDNKLYAKFSKCEFWL 543

Query: 61  EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
           +QV FLGHV+  +G++VDP KIEAVT W RP+TV+EVRSFLGL GYYRRFV++F++IATP
Sbjct: 544 KQVSFLGHVISKVGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 603

Query: 121 LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
           LT+LT+KG  F W+  CE SF+ LKQ+LV+  VLT+  G G FV+YSDASK+GLGCVLM 
Sbjct: 604 LTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMH 663

Query: 181 RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
           +GKV+AY SRQLK +E+NYPTHDLELAAVVFALKIWRHYLY E+ QIFTDHKSLKYFFTQ
Sbjct: 664 QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQ 723

Query: 241 KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
           KELN+RQRRWLELVKDYD EILYHPGKANVVADALS+K++H++ALIT Q  + +DLERAE
Sbjct: 724 KELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAE 783

Query: 301 VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGAL 360
           +AV++G V  QLAQLT+QPTLRQR+ID Q  DP LV KR L +A Q  EFSL++DGG L
Sbjct: 784 IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLL 842

[Close]

BLAST of CmoCh13G003200 vs. ExPASy TrEMBL
Match: A0A5A7TQ36 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001110 PE=4 SV=1)

HSP 1 Score: 540.8 bits (1392), Expect = 4.4e-150
Identity = 262/359 (72.98%), Postives = 306/359 (85.24%), Query Frame = 0


Query: 1   MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
           M LMN+VFREFLDNF+IVFIDDIL+YSKT  +HEEHLR VL T R NKL+AKFSKCEFW 
Sbjct: 244 MDLMNRVFREFLDNFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 303

Query: 61  EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
           +QV FLGHVV   G++VDP KIEAVT W RP+TV+EVRSFLGL GYYRRFV++F++IATP
Sbjct: 304 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 363

Query: 121 LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
           LT+LT+KG  F W+  CE SF+ LKQ+LV+  VLT+  G   FV+YSDASK+GLGCVLMQ
Sbjct: 364 LTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSSSFVIYSDASKKGLGCVLMQ 423

Query: 181 RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
           +GKV+AY SRQLK +E+NYPTHDLELAAVVFALKIWRHYLY E+ QIFTDHKSLKYFFTQ
Sbjct: 424 QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQ 483

Query: 241 KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
           KELN+RQRRWLELVKDYD EILYHPGKANVVADALS+K++H++ALIT Q  + +DLERAE
Sbjct: 484 KELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSTALITRQAPLHRDLERAE 543

Query: 301 VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGAL 360
           +AV++G V  QLAQLT+QPTLRQR+ID Q  DP LV KR L +A Q  EFSL++DGG L
Sbjct: 544 IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLL 602

[Close]

BLAST of CmoCh13G003200 vs. NCBI nr
Match: KAA0046094.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 543.1 bits (1398), Expect = 1.8e-150
Identity = 262/359 (72.98%), Postives = 307/359 (85.52%), Query Frame = 0


Query: 1    MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
            M LMN+VFREFLD F+IVFIDDIL+YSKT  +HEEHLR VL T R NKL+AKFSKCEFW 
Sbjct: 2411 MNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 2470

Query: 61   EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
            +QV FLGHVV   G++VDP KIEAVT W RP+TV+EVRSFLGL GYYRRFV++F++IATP
Sbjct: 2471 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 2530

Query: 121  LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
            LT+LT+KG  F W+  CE SF+ LKQ+LV+  VLT+  G G FV+YSDASK+GLGCVLMQ
Sbjct: 2531 LTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQ 2590

Query: 181  RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
            +GKV+AY SRQLK +E+NYPTHDLELAAVVFALKIWRHYLY E+ QIFTDHKSLKYFFTQ
Sbjct: 2591 QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQ 2650

Query: 241  KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
            KELN+RQRRWLELVKDYD EILYHPGKANVVADALS+K++H++ALIT Q  + +DLER E
Sbjct: 2651 KELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERVE 2710

Query: 301  VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGAL 360
            +AV++G V  QLAQLT+QPTLRQR+ID Q  DP LV KR L +A QT+EFSL++DGG L
Sbjct: 2711 IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTDEFSLSSDGGLL 2769

[Close]

BLAST of CmoCh13G003200 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 542.7 bits (1397), Expect = 2.4e-150
Identity = 263/359 (73.26%), Postives = 307/359 (85.52%), Query Frame = 0


Query: 1    MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
            M LMN+VFREFLD F+IVFIDDIL+YSKT  +HEEHLR VL T R NKL+AKFSKCEFW 
Sbjct: 960  MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 1019

Query: 61   EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
            +QV FLGHVV   G++VDP KIEAVT W RP+TV+EVRSFLGL GYYRRFV++F++IATP
Sbjct: 1020 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 1079

Query: 121  LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
            LT+LT+KG  F W+  CE SF+ LKQ+LV+  VLT+  G G FV+YSDASK+GLGCVLMQ
Sbjct: 1080 LTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQ 1139

Query: 181  RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
            +GKV+AY SRQLK +E+NYPTHDLELAAVVFALKIWRHYLY E+ QIFTDHKSLKYFFTQ
Sbjct: 1140 QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQ 1199

Query: 241  KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
            KELN+RQRRWLELVKDYD EILYHPGKANVVADALS+K++H++ALIT Q  + +DLERAE
Sbjct: 1200 KELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAE 1259

Query: 301  VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGAL 360
            +AV++G V  QLAQLT+QPTLRQR+ID Q  DP LV KR L +A QT EFSL++DGG L
Sbjct: 1260 IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLL 1318

[Close]

BLAST of CmoCh13G003200 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 542.0 bits (1395), Expect = 4.1e-150
Identity = 263/359 (73.26%), Postives = 306/359 (85.24%), Query Frame = 0


Query: 1   MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
           M LMN+VFREFLD F+IVFIDDIL+YSKT  +HEEHLR VL T R NKL+AKFSKCEFW 
Sbjct: 127 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 186

Query: 61  EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
           +QV FLGHVV   G++VDP KIEAVT W RP+TV+EVRSFLGL GYYRRFV++F++IATP
Sbjct: 187 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 246

Query: 121 LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
           LT+LT+KG  F W+  CE SF+ LKQ+LV+  VLT+  G G FV+YSDASK+GLGCVLMQ
Sbjct: 247 LTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQ 306

Query: 181 RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
           +GKV+AY SRQLK +E+NYPTHDLELAAVVFALKIWRHYLY E+ QIFTDHKSLKYFFTQ
Sbjct: 307 QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQ 366

Query: 241 KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
           KELN+RQRRWLELVKDYD EILYHPGKANVVADALS+K++H++ALIT Q  + +DLERAE
Sbjct: 367 KELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAE 426

Query: 301 VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGAL 360
           +AV +G V  QLAQLT+QPTLRQR+ID Q  DP LV KR L +A QT EFSL++DGG L
Sbjct: 427 IAVLVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLL 485

[Close]

BLAST of CmoCh13G003200 vs. NCBI nr
Match: KAA0059792.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 541.6 bits (1394), Expect = 5.3e-150
Identity = 261/359 (72.70%), Postives = 307/359 (85.52%), Query Frame = 0


Query: 1   MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
           M LMN+VFREFLD F+IVFIDDIL+YSKT  +HEEHLRKVL T R NKL+AKFSKCEFW 
Sbjct: 484 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRKVLQTLRDNKLYAKFSKCEFWL 543

Query: 61  EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
           +QV FLGHV+  +G++VDP KIEAVT W RP+TV+EVRSFLGL GYYRRFV++F++IATP
Sbjct: 544 KQVSFLGHVISKVGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 603

Query: 121 LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
           LT+LT+KG  F W+  CE SF+ LKQ+LV+  VLT+  G G FV+YSDASK+GLGCVLM 
Sbjct: 604 LTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMH 663

Query: 181 RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
           +GKV+AY SRQLK +E+NYPTHDLELAAVVFALKIWRHYLY E+ QIFTDHKSLKYFFTQ
Sbjct: 664 QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQ 723

Query: 241 KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
           KELN+RQRRWLELVKDYD EILYHPGKANVVADALS+K++H++ALIT Q  + +DLERAE
Sbjct: 724 KELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAE 783

Query: 301 VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGAL 360
           +AV++G V  QLAQLT+QPTLRQR+ID Q  DP LV KR L +A Q  EFSL++DGG L
Sbjct: 784 IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLL 842

[Close]

BLAST of CmoCh13G003200 vs. NCBI nr
Match: KAA0058399.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 540.8 bits (1392), Expect = 9.1e-150
Identity = 262/359 (72.98%), Postives = 305/359 (84.96%), Query Frame = 0


Query: 1    MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
            M LMN+VFREFLD F+IVFIDDIL+YSKT  +HEEHLR VL T R NKL+AKFSKCEFW 
Sbjct: 937  MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRNNKLYAKFSKCEFWL 996

Query: 61   EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
            +QV FLGHVV   G++VDP KIEAVT W RP+TV+EVRSFLGL GYYRRFV++F++IATP
Sbjct: 997  KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 1056

Query: 121  LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
            LT+LT+KG  F W+  CE SF+ LKQ+LV+  VLT+  G G FV+YSDASK+GLGCVLMQ
Sbjct: 1057 LTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQ 1116

Query: 181  RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
            +GKV+AY SRQLK +E+NYPTHDLELAAVVFALKIWRHYLY E  QIFTDHKSLKYFFTQ
Sbjct: 1117 QGKVVAYASRQLKSHEKNYPTHDLELAAVVFALKIWRHYLYGENIQIFTDHKSLKYFFTQ 1176

Query: 241  KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
            KELN+RQRRWLELVKDYD EILYHPGKANVVADALS+K++H++ALIT Q  + +DLERAE
Sbjct: 1177 KELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAE 1236

Query: 301  VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGAL 360
            +AV++G V  QLAQLT+QPTLRQR+ID Q  DP LV KR L +A Q  EFSL++DGG L
Sbjct: 1237 IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLTEAGQAAEFSLSSDGGLL 1295

[Close]

BLAST of CmoCh13G003200 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 8.2e-24
Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 0


Query: 36  HLRKVLTTPRTNKLFAKFSKCEFWAEQVGFLG--HVVLSMGITVDPTKIEAVTNWPRPTT 95
           HL  VL     ++ +A   KC F   Q+ +LG  H++   G++ DP K+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 96  VTEVRSFLGLVGYYRRFVQDFAKIATPLTELTKKGKSFTWNDQCEVSFKELKQRLVSDAV 155
            TE+R FLGL GYYRRFV+++ KI  PLTEL KK  S  W +   ++FK LK  + +  V
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWTEMAALAFKALKGAVTTLPV 122

Query: 156 LTI 157
           L +
Sbjct: 123 LAL 124

The following BLAST results are available for this feature:

BLAST of CmoCh13G003200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.7e-53	39.12	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	6.5e-50	36.39	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	1.9e-49	36.57	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	3.7e-45	35.07	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	2.3e-39	32.65	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of CmoCh13G003200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSQ8	8.9e-151	72.98	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]
A0A5D3BPI1	1.2e-150	73.26	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
Q84KB0	2.0e-150	73.26	Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7UV42	2.6e-150	72.70	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10...	[more]
A0A5A7TQ36	4.4e-150	72.98	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32...	[more]

BLAST of CmoCh13G003200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046094.1	1.8e-150	72.98	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
TYK01613.1	2.4e-150	73.26	pol protein [Cucumis melo var. makuwa]	[more]
AAO45752.1	4.1e-150	73.26	pol protein [Cucumis melo subsp. melo]	[more]
KAA0059792.1	5.3e-150	72.70	pol protein [Cucumis melo var. makuwa]	[more]
KAA0058399.1	9.1e-150	72.98	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of CmoCh13G003200 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	8.2e-24	42.28	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 163..257 e-value: 1.3E-32 score: 112.2
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..69 e-value: 8.6E-10 score: 38.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 80..172 e-value: 1.5E-31 score: 110.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..74 e-value: 1.3E-23 score: 85.3
None	No IPR available	PANTHER	PTHR24559:SF383	DNA/RNA POLYMERASES SUPERFAMILY PROTEIN	coord: 66..291
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 66..291
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 164..276 e-value: 6.26452E-57 score: 179.611
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..70 e-value: 1.96926E-25 score: 99.2069
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003200.1	CmoCh13G003200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding