CmoCh13G002740 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G002740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionrecQ-mediated genome instability protein 2
LocationCmo_Chr13: 2230875 .. 2235445 (+)
RNA-Seq ExpressionCmoCh13G002740
SyntenyCmoCh13G002740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCGGAGAAATGGATTATAGCTTAGCAGCGTTGAAGCTTCTGTGCAGGCAGCTCAACGACGCCCGCCAAGCTCCGTCCAACAACGCCGCCACACTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGTCCTCTCTTCCACATCCTTCCCTTCTCTTCCTCTCTCTCTCTCAATCCTTTTCTCTAATCGGAGCTCTCCCTGCAGGGGATTTTGGTCTTCGTCGACAGAGATAATGGTAAGCTGATTCTCGACGACGGCACCGGCACCGTCGAGCTCTCTCTTTCTGGCGACTTCCGCCAACGCCCTTGGAGCCTCGGTACTTGACCTCCTACTTTCCATTCTCTCTTTCTTTTATTTCTGCTGCCTTTTGATTTGGTTTCTCTCGCTTTCTTTGTTCGTTTTGTACAGGAATGTATGTGATGGTTGTTGGCGCTTATGTCGTCCGGACGAATGAACCGTCCATTATTGCGGTGAGATCGAGACTTCATCCTCTATTCCTTTTTGTTTCCTCCGCTCTCTCTTGCCTTTTTTCCTTGATGATCGTCCTGTGCTTGACATATAGAGAAGACTTCATTGTTTTCTTCTTAAGAGAACATGAAGTACTGAAAATTTGACTCGAACATCATCAGTCTACCAATTTTGTTGTGATGAGATCGCTGTGATTCTAATGATTTCTTTTGACTTTAATGTTTTATTTACTAAATCAAATTGTATTTGCTCATGTAGTTCCCTTCATCGTAATGTATTTCCTTGGTTGAACATTCTTGGCTTTCAGTTTTATTTTTATCTACAAAGTCTTTACAAGATACCTTTGCCGGGTGCAGGCGTATTCAGTAAAGAAAGCACTTCTGAAATCGGGCTTTCGTATCCTCGAAAATGAAACTAGTGCCTGGAAATGACGTAATGAAATGAATCTATAAAAATTAGAATACTAGACAAGTTATATCTATAGAAGATTCTGATAGAACATAGAAGAGATCCTTTTGAGATCCTTTTGATAAATGCCTACTTTGATTACCAGGCTAAAACAAGGACCAAAGAGCACCGCGTCTTGGTTTCTATCCTACATCTCTCCTTTGAATTCCGTTTGTGTTGCAACGAAGACTTGGTTTGTCTTAACTTGGTGCTACACCTCAAAGCGTAATCCGATCTAAAATGAATTGGCTTGGCCGCAAGGCCGGGGATATCTTCACCCTCATTTCTTTATTACTTATGAGTCATTCATTCAAAAAGGACAAGCAAATCATTTAGGTTAATCATGTTCGAACTTTCATATTGTATCTTTGGTTTGAGCACAATGGTCGTATCATTACAAATAAGAGTCGTAATATCAACTATTTTATAGAAGCCACCTCTCTTTTTAGCTATTACTTGAAGCAACTCGTTTCCTCCCTTTTGTAATTATAGCTTATCTACCATCGTGAATCAATTGAAGTGCTGTTTTGTAATTATTGTCTGATAGAATCTTCTTCTGTATTACCTACTTCATCATATCAATGAATGGTTTTTGTTTTTTATCAAAAAGTTTTCGAATGCATAATAAGAGGTTGATGCTTGGTTTTTGGATTATTGAACTGCATTTTTGAAGACACTGTAACATGATGATTCCACTACTTTCGAGAAATTTATTGAATCGATTCTTTTTAAGATGTATGCAGCCATTTAAGATTACAGCCTAACGTCTCTTATTACCTGGTGGAGACTTTTTCGTAATCCACCTTTGGTCGTTGGGAACAACCACCCTCCCCTTTTATAAATCTCATTCAATCAATGAACCTCTGTTACCCTCCAAAAAAAAAATAATAATAATAATTTGATATGTTGCTGTTGTACTTTATGGACATTATATATGGTCTTTCTGGGTGCATCAGCTAATTTTTGTAGGTTTCTACCTTTTGTAAAGCTTGTTGATTGGTTTCCTATATTCTCCAGGTGGTGCGAGTTTTTAAGCTTTTTCCTATGTTCATGGGTGTAGTAGATAAGCCAACAGCCATAGAAACATGTTGGTGGATAATTCAGTATTTCAGATGATTCTTTTAGCATTCGATTAAATTTCTATTGCTATCTTTGAGATGGTTGGCTTCTCTTAATTTCAAGCAAGTTTTATCCAAATAAGTTCTACATTTTAGCTGTCTTTGCCTCTCTTTCCATCATTTTCTTTGTACTACACCTTCATTTGCTGGTGTTCAACATGTAGGTGTGATGTTTTGTTGCACTGGCATTTAGTGTCCCATGCGCTGGAGATTAACTCTCATAGGGGCTTTGTTGTCCCCATAACATGACAACGGCCAACTTTTGTAGATAACACTAAATTCCTTACCATGTCTAATACCGAGGAGGAAAGACAGTGTTCGTAACTTAAAGTTACTTAATAGCATAGAGTTTTGATATCTACCATCAACAAGAACTGATGTTAGTTAGTTTTGTGATTTGCATCAGGTCCACAAGATTGTTGATCTATCAATGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAATTTTCGTAACTCGTTTTGCTGACTCAACAGGTAATGCTTACTGTATTTTCATGTTAATCCTGTAACGAAAATGCATCAATTTATTGCAAGCTCACAGATGGGTTTTTTTTCTCTTATTACATATTTAAACTCCAATTGAAATTCTCATCTCATGTATTGTTAGGATGATCTTTTGATCTCGTAAGATCACAACTATAAGTTAGAGAATCCGAGTATTATCCTTTCGTAGGCGTAATAGAGAAAACATAAATAGATAAGGATAGGCAGATTAGGAGAGCCAACCCTGTTGCTGTCTCTGATGTTATAAAAAGGAATTACCATAGTAGTTGAGGTAATCCTTGGTCTTGTCTTTTAGTTTCTTTTCAACTATTTAAATGCTTGGTTTGTTGTAAATGTGCTATAAATAGAGTGTTTCTCTCTTGTGATCAATAACATTTGGATGATAATAAAGAAACGATTCAGATTCTTGGAGACTTCTCCTTGAGGCTAGTTAGGCTACACCATTTTGCCCCATCAGAAACATTTGTAGTGGACATATTAGAAAATTTCTATAACAAAGTTTGATCAAGGAATACATACAGAGTACTCGACCTAAGTTATGGGGTGATGGGTGTCATGGTCCTACCTTTTTCAGTATTCTGCAATTTCTTCTCGCATAGTTAGTAATAAGAATTCTATTGCCTCAATAATCAACAAAACAGTTTCAAACTAGTTGAACTGGGCAAGTTCTTTCTCCACAAAACCAAGCCCACTTATCTTGCATGTTGGATGGCACCCAAATTAACCAAGCTCTCTTTGCTTTTAGATGGCTTAATCTTAAGCTTATAATGACAACTTCCATGGAGCTTGAATGGCCCTTGTCTTCTCTTTGTGTCTCGAGTTGTCTCACCTCTTCTCCATGCCAAGATCACCGACTTTAGTCCTACCTCTACTATAGGCTGTAAGGCTAAGACTTTCTTGAACTTAGCGTCACCTTGCTTACTCAAATATAGCCCACAATGTTCTTTTTCTTGACTATTTGAGACACCAAGATGACTGTTAGTCCCTCTCTGCCTGGCGAAAATATGCATCAATCCTTGCTTAATGATTAAGTATCTTGATGCAATTTCCAGTCTTAAGAAGCACACATATGATATGACATGCCATGAGACTAGTTTCCCATTGTCCCGAAGGTGAGTCACAAAATCCAATAGTGATAGTGATCTTTTCCTTCTTGTAAGTTTTATGCATTTATTTGATTCAGAAATGATTTTAATCTATTTCCTTCTCAAAATTTATTTAAAGTTAAATATTCAACGTGTCTAAAATGTTGGACCTACATTAACTTCGTATAATTAGTGTCTAACCCATATATTATGTTAATAGGTGTCAAATGTGTTCAACAAGTATTAGAGTGTTTAAGGGTCTGACATAGTTGGACATGGACATACTAGCCAAACTAAAGTGTTCGTGCTTATTAGTATCCATCAACTTTGAAACCGTTTATAGTGACATAGAATGTCAACCATGTCTCTCATGCATACCTACTGCTAGATGCCTATTTTTGAGACTAGGCCATAGATTGAATTGAACCTCAAGCCAATATTGAGTACAATGTCGTGCACACCCATCACGAGCACAACAAGCATTGTTCAAGGAATTTTTCACTCCCCTTTGGAGATAATGAATCTTTTTTTTGTTCAGGATGTTCACGCATTACATTCCGAAGTAACTCTCCATGGAATGACATACTTTTGTGAAAGATCAAACTTTGTCTACCAAATGTTCGCTTAGGGAGAGGGACCCCGTTTACCTTACCCAATGATGCCGAAAGGTCCATGCCATAGAGTTAGAGCCTTCAATTATTATGAATATGTTGGGAGGGGTGATATGGAAAAACATGGTTTGACAATGAATTATTTCAGGTACCTAGTAGATTGGGACATATAGGAGAATAGGGAACAATTATTTGTTTTACAGGAGCTGCTAGTGTATTACAGCAATTATATACAACAATCATTTTGAAAAACCATCACTTTCTTTCC

mRNA sequence

AAGCGGAGAAATGGATTATAGCTTAGCAGCGTTGAAGCTTCTGTGCAGGCAGCTCAACGACGCCCGCCAAGCTCCGTCCAACAACGCCGCCACACTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTTCGTCGACAGAGATAATGGTAAGCTGATTCTCGACGACGGCACCGGCACCGTCGAGCTCTCTCTTTCTGGCGACTTCCGCCAACGCCCTTGGAGCCTCGGAATGTATGTGATGGTTGTTGGCGCTTATGTCGTCCGGACGAATGAACCGTCCATTATTGCGGTCCACAAGATTGTTGATCTATCAATGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAATTTTCGATGTTCACGCATTACATTCCGAAGTAACTCTCCATGGAATGACATACTTTTGTGAAAGATCAAACTTTGTCTACCAAATGTTCGCTTAGGGAGAGGGACCCCGTTTACCTTACCCAATGATGCCGAAAGGTCCATGCCATAGAGTTAGAGCCTTCAATTATTATGAATATGTTGGGAGGGGTGATATGGAAAAACATGGTTTGACAATGAATTATTTCAGGTACCTAGTAGATTGGGACATATAGGAGAATAGGGAACAATTATTTGTTTTACAGGAGCTGCTAGTGTATTACAGCAATTATATACAACAATCATTTTGAAAAACCATCACTTTCTTTCC

Coding sequence (CDS)

ATGGATTATAGCTTAGCAGCGTTGAAGCTTCTGTGCAGGCAGCTCAACGACGCCCGCCAAGCTCCGTCCAACAACGCCGCCACACTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTTCGTCGACAGAGATAATGGTAAGCTGATTCTCGACGACGGCACCGGCACCGTCGAGCTCTCTCTTTCTGGCGACTTCCGCCAACGCCCTTGGAGCCTCGGAATGTATGTGATGGTTGTTGGCGCTTATGTCGTCCGGACGAATGAACCGTCCATTATTGCGGTCCACAAGATTGTTGATCTATCAATGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAATTTTCGATGTTCACGCATTACATTCCGAAGTAA

Protein sequence

MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTGTVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVMEAYKMFYEPLVEEFSMFTHYIPK
Homology
BLAST of CmoCh13G002740 vs. ExPASy Swiss-Prot
Match: Q96E14 (RecQ-mediated genome instability protein 2 OS=Homo sapiens OX=9606 GN=RMI2 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 46/124 (37.10%), Postives = 61/124 (49.19%), Query Frame = 0

Query: 8   LKLLCRQL-NDARQAP-----SNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTGT 67
           LK+L  QL  DA   P     S  AA  G +     W+QG +V  DR   +L    G  +
Sbjct: 23  LKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLDLAAVWMQGRVVMADRGEARLRDPSGDFS 82

Query: 68  VELSLSGDFRQRPWSL-GMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 125
           V   L    R RP  + G YVMV+G     + EP + AV K+ DLS  P  E+MW LEV 
Sbjct: 83  VR-GLERVPRGRPCLVPGKYVMVMGVVQACSPEPCLQAV-KMTDLSDNPIHESMWELEVE 142

BLAST of CmoCh13G002740 vs. ExPASy Swiss-Prot
Match: Q5ZM20 (RecQ-mediated genome instability protein 2 OS=Gallus gallus OX=9031 GN=RMI2 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.2e-05
Identity = 43/127 (33.86%), Postives = 61/127 (48.03%), Query Frame = 0

Query: 8   LKLLCRQLNDARQAP------SNNAATLGGILFQRAWLQGILVFVDR-DNGKLILDDGTG 67
           LK+L  QL  A +        S        +  +  W+QG ++ V+R   G   L DG+G
Sbjct: 10  LKVLAAQLRAAGRGAGGTWRLSRTETGRAPLCLRAVWMQGTVLQVERGGGGSARLRDGSG 69

Query: 68  -TVELSLSGDFRQRP-WSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLE 126
               L +    R RP  S G YVMV+G     + EP + A+ K+ DLS  P  E MW LE
Sbjct: 70  HFTVLGVEDVPRGRPCLSAGKYVMVMGMVRACSPEPVLRAI-KMTDLSENPVHEEMWGLE 129

BLAST of CmoCh13G002740 vs. ExPASy Swiss-Prot
Match: A5PJU7 (RecQ-mediated genome instability protein 2 OS=Bos taurus OX=9913 GN=RMI2 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.1e-04
Identity = 42/128 (32.81%), Postives = 65/128 (50.78%), Query Frame = 0

Query: 8   LKLLCRQL-NDARQAPSN---NAATLG--GILFQRAWLQGILVFVDRDNGKLILDDGTGT 67
           +K+L  QL  DA   P +   + A +G   +  +  W+QG +  V+   G   L D +G+
Sbjct: 24  IKVLAEQLRRDAEGGPGSWRLSRAAVGREPLELRAVWMQGTV--VEAGGGVARLRDPSGS 83

Query: 68  VEL-SLSGDFRQRPWSL-GMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEV 127
             +  L    R RP  + G YVMV+G     + EP + AV K+ DLS  P  E++W LEV
Sbjct: 84  FSVRGLERVPRGRPCLVPGKYVMVMGVIQACSPEPCLQAV-KMTDLSDNPLHESLWELEV 143

BLAST of CmoCh13G002740 vs. ExPASy TrEMBL
Match: A0A6J1HLJ4 (uncharacterized protein LOC111464675 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464675 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.9e-70
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0

Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFS 136
           EAYKMFYEPLVEEFS
Sbjct: 121 EAYKMFYEPLVEEFS 135

BLAST of CmoCh13G002740 vs. ExPASy TrEMBL
Match: A0A6J1I0C8 (uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.3e-69
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0

Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDY+LAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG
Sbjct: 1   MDYNLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLS FPGREAMWYLEVM
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSKFPGREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFS 136
           EAYKMFYEPLVEEFS
Sbjct: 121 EAYKMFYEPLVEEFS 135

BLAST of CmoCh13G002740 vs. ExPASy TrEMBL
Match: A0A6J1DF83 (recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020510 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.7e-55
Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 0

Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALK+LC QL  AR  PS +AATLGGILFQRAWLQGILV VD+ N +L+LDDGTG
Sbjct: 1   MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLS DFR RPW+LGMYVMVVGA+V+R NEP II VHKIVDLS FP REAMWYLEVM
Sbjct: 61  TVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVHKIVDLSEFPSREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEF 135
           EAYKMFYEPL+EEF
Sbjct: 121 EAYKMFYEPLIEEF 134

BLAST of CmoCh13G002740 vs. ExPASy TrEMBL
Match: A0A5A7UD07 (RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00780 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.3e-54
Identity = 110/134 (82.09%), Postives = 117/134 (87.31%), Query Frame = 0

Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALKLLCRQL DAR  PS+  ATL GILFQRAWLQGILV VD++NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSL  +F  RPWSLGMYVMVVGA++ RTNEP  I+VHKIVDLS  P REAMWYLEVM
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEF 135
           EAYKMFYEPLVEEF
Sbjct: 121 EAYKMFYEPLVEEF 134

BLAST of CmoCh13G002740 vs. ExPASy TrEMBL
Match: A0A1S3CGI5 (recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC103500657 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.3e-54
Identity = 110/134 (82.09%), Postives = 117/134 (87.31%), Query Frame = 0

Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALKLLCRQL DAR  PS+  ATL GILFQRAWLQGILV VD++NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSL  +F  RPWSLGMYVMVVGA++ RTNEP  I+VHKIVDLS  P REAMWYLEVM
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEF 135
           EAYKMFYEPLVEEF
Sbjct: 121 EAYKMFYEPLVEEF 134

BLAST of CmoCh13G002740 vs. NCBI nr
Match: XP_022964663.1 (uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata] >XP_023519120.1 uncharacterized protein LOC111782580 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6583596.1 RecQ-mediated genome instability protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019296.1 RecQ-mediated genome instability protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.9 bits (699), Expect = 8.1e-70
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0

Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFS 136
           EAYKMFYEPLVEEFS
Sbjct: 121 EAYKMFYEPLVEEFS 135

BLAST of CmoCh13G002740 vs. NCBI nr
Match: XP_022970350.1 (uncharacterized protein LOC111469342 [Cucurbita maxima] >XP_022970351.1 uncharacterized protein LOC111469342 [Cucurbita maxima])

HSP 1 Score: 270.4 bits (690), Expect = 8.9e-69
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0

Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDY+LAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG
Sbjct: 1   MDYNLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLS FPGREAMWYLEVM
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSKFPGREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFS 136
           EAYKMFYEPLVEEFS
Sbjct: 121 EAYKMFYEPLVEEFS 135

BLAST of CmoCh13G002740 vs. NCBI nr
Match: XP_038894076.1 (uncharacterized protein LOC120082820 [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 6.4e-59
Identity = 116/135 (85.93%), Postives = 124/135 (91.85%), Query Frame = 0

Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALKLLCRQL DARQ+P+NNAATLGGILFQRAWLQG LV VD++N KLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARQSPTNNAATLGGILFQRAWLQGNLVSVDKENAKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLS DFR RPW LGMYVMVVGA+V RTNEP +IAVHKIVDLS FP REAMWYLEV+
Sbjct: 61  TVELSLSRDFRLRPWILGMYVMVVGAFVFRTNEPPVIAVHKIVDLSKFPDREAMWYLEVV 120

Query: 121 EAYKMFYEPLVEEFS 136
           EAYKMFYEPL+EEFS
Sbjct: 121 EAYKMFYEPLIEEFS 135

BLAST of CmoCh13G002740 vs. NCBI nr
Match: XP_022152884.1 (recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_022152885.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia])

HSP 1 Score: 224.6 bits (571), Expect = 5.6e-55
Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 0

Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALK+LC QL  AR  PS +AATLGGILFQRAWLQGILV VD+ N +L+LDDGTG
Sbjct: 1   MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLS DFR RPW+LGMYVMVVGA+V+R NEP II VHKIVDLS FP REAMWYLEVM
Sbjct: 61  TVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVHKIVDLSEFPSREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEF 135
           EAYKMFYEPL+EEF
Sbjct: 121 EAYKMFYEPLIEEF 134

BLAST of CmoCh13G002740 vs. NCBI nr
Match: XP_008462275.1 (PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096.1 recQ-mediated genome instability protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 221.5 bits (563), Expect = 4.7e-54
Identity = 110/134 (82.09%), Postives = 117/134 (87.31%), Query Frame = 0

Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALKLLCRQL DAR  PS+  ATL GILFQRAWLQGILV VD++NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSL  +F  RPWSLGMYVMVVGA++ RTNEP  I+VHKIVDLS  P REAMWYLEVM
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEF 135
           EAYKMFYEPLVEEF
Sbjct: 121 EAYKMFYEPLVEEF 134

BLAST of CmoCh13G002740 vs. TAIR 10
Match: AT1G08390.1 (unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-46
Identity = 88/137 (64.23%), Postives = 107/137 (78.10%), Query Frame = 0

Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGK--LILDDG 60
           MDYSLAA+K+LC QL DA+  PS NAA+LGG+LFQRAWLQG+LV      G   L+LDDG
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDG 60

Query: 61  TGTVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLE 120
           TG +EL L+ DF  R W  GMYVMVVG Y VRT +  ++ VHK+VDLS+ P REAMWYLE
Sbjct: 61  TGLLELGLTNDFALRQWKSGMYVMVVGVYQVRTGQIPLLKVHKMVDLSVSPDREAMWYLE 120

Query: 121 VMEAYKMFYEPLVEEFS 136
           VM+AY++FYEPL++EFS
Sbjct: 121 VMDAYRLFYEPLIQEFS 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q96E141.7e-0637.10RecQ-mediated genome instability protein 2 OS=Homo sapiens OX=9606 GN=RMI2 PE=1 ... [more]
Q5ZM203.2e-0533.86RecQ-mediated genome instability protein 2 OS=Gallus gallus OX=9031 GN=RMI2 PE=2... [more]
A5PJU76.1e-0432.81RecQ-mediated genome instability protein 2 OS=Bos taurus OX=9913 GN=RMI2 PE=2 SV... [more]
Match NameE-valueIdentityDescription
A0A6J1HLJ43.9e-70100.00uncharacterized protein LOC111464675 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1I0C84.3e-6998.52uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342... [more]
A0A6J1DF832.7e-5581.34recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=... [more]
A0A5A7UD072.3e-5482.09RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3CGI52.3e-5482.09recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC1035006... [more]
Match NameE-valueIdentityDescription
XP_022964663.18.1e-70100.00uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata] >XP_0235191... [more]
XP_022970350.18.9e-6998.52uncharacterized protein LOC111469342 [Cucurbita maxima] >XP_022970351.1 uncharac... [more]
XP_038894076.16.4e-5985.93uncharacterized protein LOC120082820 [Benincasa hispida][more]
XP_022152884.15.6e-5581.34recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_... [more]
XP_008462275.14.7e-5482.09PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096... [more]
Match NameE-valueIdentityDescription
AT1G08390.11.0e-4664.23unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032245RecQ-mediated genome instability protein 2PFAMPF16100RMI2coord: 6..123
e-value: 3.0E-32
score: 111.2
IPR032245RecQ-mediated genome instability protein 2PANTHERPTHR33962RECQ-MEDIATED GENOME INSTABILITY PROTEIN 2 RMI2coord: 1..133
NoneNo IPR availableGENE3D2.40.50.140coord: 4..126
e-value: 2.2E-31
score: 110.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G002740.1CmoCh13G002740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043007 maintenance of rDNA
biological_process GO:2000042 negative regulation of double-strand break repair via homologous recombination
biological_process GO:0009555 pollen development
biological_process GO:0033045 regulation of sister chromatid segregation
cellular_component GO:0005829 cytosol
cellular_component GO:0016607 nuclear speck