CmoCh13G002740 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGCGGAGAAATGGATTATAGCTTAGCAGCGTTGAAGCTTCTGTGCAGGCAGCTCAACGACGCCCGCCAAGCTCCGTCCAACAACGCCGCCACACTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGTCCTCTCTTCCACATCCTTCCCTTCTCTTCCTCTCTCTCTCTCAATCCTTTTCTCTAATCGGAGCTCTCCCTGCAGGGGATTTTGGTCTTCGTCGACAGAGATAATGGTAAGCTGATTCTCGACGACGGCACCGGCACCGTCGAGCTCTCTCTTTCTGGCGACTTCCGCCAACGCCCTTGGAGCCTCGGTACTTGACCTCCTACTTTCCATTCTCTCTTTCTTTTATTTCTGCTGCCTTTTGATTTGGTTTCTCTCGCTTTCTTTGTTCGTTTTGTACAGGAATGTATGTGATGGTTGTTGGCGCTTATGTCGTCCGGACGAATGAACCGTCCATTATTGCGGTGAGATCGAGACTTCATCCTCTATTCCTTTTTGTTTCCTCCGCTCTCTCTTGCCTTTTTTCCTTGATGATCGTCCTGTGCTTGACATATAGAGAAGACTTCATTGTTTTCTTCTTAAGAGAACATGAAGTACTGAAAATTTGACTCGAACATCATCAGTCTACCAATTTTGTTGTGATGAGATCGCTGTGATTCTAATGATTTCTTTTGACTTTAATGTTTTATTTACTAAATCAAATTGTATTTGCTCATGTAGTTCCCTTCATCGTAATGTATTTCCTTGGTTGAACATTCTTGGCTTTCAGTTTTATTTTTATCTACAAAGTCTTTACAAGATACCTTTGCCGGGTGCAGGCGTATTCAGTAAAGAAAGCACTTCTGAAATCGGGCTTTCGTATCCTCGAAAATGAAACTAGTGCCTGGAAATGACGTAATGAAATGAATCTATAAAAATTAGAATACTAGACAAGTTATATCTATAGAAGATTCTGATAGAACATAGAAGAGATCCTTTTGAGATCCTTTTGATAAATGCCTACTTTGATTACCAGGCTAAAACAAGGACCAAAGAGCACCGCGTCTTGGTTTCTATCCTACATCTCTCCTTTGAATTCCGTTTGTGTTGCAACGAAGACTTGGTTTGTCTTAACTTGGTGCTACACCTCAAAGCGTAATCCGATCTAAAATGAATTGGCTTGGCCGCAAGGCCGGGGATATCTTCACCCTCATTTCTTTATTACTTATGAGTCATTCATTCAAAAAGGACAAGCAAATCATTTAGGTTAATCATGTTCGAACTTTCATATTGTATCTTTGGTTTGAGCACAATGGTCGTATCATTACAAATAAGAGTCGTAATATCAACTATTTTATAGAAGCCACCTCTCTTTTTAGCTATTACTTGAAGCAACTCGTTTCCTCCCTTTTGTAATTATAGCTTATCTACCATCGTGAATCAATTGAAGTGCTGTTTTGTAATTATTGTCTGATAGAATCTTCTTCTGTATTACCTACTTCATCATATCAATGAATGGTTTTTGTTTTTTATCAAAAAGTTTTCGAATGCATAATAAGAGGTTGATGCTTGGTTTTTGGATTATTGAACTGCATTTTTGAAGACACTGTAACATGATGATTCCACTACTTTCGAGAAATTTATTGAATCGATTCTTTTTAAGATGTATGCAGCCATTTAAGATTACAGCCTAACGTCTCTTATTACCTGGTGGAGACTTTTTCGTAATCCACCTTTGGTCGTTGGGAACAACCACCCTCCCCTTTTATAAATCTCATTCAATCAATGAACCTCTGTTACCCTCCAAAAAAAAAATAATAATAATAATTTGATATGTTGCTGTTGTACTTTATGGACATTATATATGGTCTTTCTGGGTGCATCAGCTAATTTTTGTAGGTTTCTACCTTTTGTAAAGCTTGTTGATTGGTTTCCTATATTCTCCAGGTGGTGCGAGTTTTTAAGCTTTTTCCTATGTTCATGGGTGTAGTAGATAAGCCAACAGCCATAGAAACATGTTGGTGGATAATTCAGTATTTCAGATGATTCTTTTAGCATTCGATTAAATTTCTATTGCTATCTTTGAGATGGTTGGCTTCTCTTAATTTCAAGCAAGTTTTATCCAAATAAGTTCTACATTTTAGCTGTCTTTGCCTCTCTTTCCATCATTTTCTTTGTACTACACCTTCATTTGCTGGTGTTCAACATGTAGGTGTGATGTTTTGTTGCACTGGCATTTAGTGTCCCATGCGCTGGAGATTAACTCTCATAGGGGCTTTGTTGTCCCCATAACATGACAACGGCCAACTTTTGTAGATAACACTAAATTCCTTACCATGTCTAATACCGAGGAGGAAAGACAGTGTTCGTAACTTAAAGTTACTTAATAGCATAGAGTTTTGATATCTACCATCAACAAGAACTGATGTTAGTTAGTTTTGTGATTTGCATCAGGTCCACAAGATTGTTGATCTATCAATGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAATTTTCGTAACTCGTTTTGCTGACTCAACAGGTAATGCTTACTGTATTTTCATGTTAATCCTGTAACGAAAATGCATCAATTTATTGCAAGCTCACAGATGGGTTTTTTTTCTCTTATTACATATTTAAACTCCAATTGAAATTCTCATCTCATGTATTGTTAGGATGATCTTTTGATCTCGTAAGATCACAACTATAAGTTAGAGAATCCGAGTATTATCCTTTCGTAGGCGTAATAGAGAAAACATAAATAGATAAGGATAGGCAGATTAGGAGAGCCAACCCTGTTGCTGTCTCTGATGTTATAAAAAGGAATTACCATAGTAGTTGAGGTAATCCTTGGTCTTGTCTTTTAGTTTCTTTTCAACTATTTAAATGCTTGGTTTGTTGTAAATGTGCTATAAATAGAGTGTTTCTCTCTTGTGATCAATAACATTTGGATGATAATAAAGAAACGATTCAGATTCTTGGAGACTTCTCCTTGAGGCTAGTTAGGCTACACCATTTTGCCCCATCAGAAACATTTGTAGTGGACATATTAGAAAATTTCTATAACAAAGTTTGATCAAGGAATACATACAGAGTACTCGACCTAAGTTATGGGGTGATGGGTGTCATGGTCCTACCTTTTTCAGTATTCTGCAATTTCTTCTCGCATAGTTAGTAATAAGAATTCTATTGCCTCAATAATCAACAAAACAGTTTCAAACTAGTTGAACTGGGCAAGTTCTTTCTCCACAAAACCAAGCCCACTTATCTTGCATGTTGGATGGCACCCAAATTAACCAAGCTCTCTTTGCTTTTAGATGGCTTAATCTTAAGCTTATAATGACAACTTCCATGGAGCTTGAATGGCCCTTGTCTTCTCTTTGTGTCTCGAGTTGTCTCACCTCTTCTCCATGCCAAGATCACCGACTTTAGTCCTACCTCTACTATAGGCTGTAAGGCTAAGACTTTCTTGAACTTAGCGTCACCTTGCTTACTCAAATATAGCCCACAATGTTCTTTTTCTTGACTATTTGAGACACCAAGATGACTGTTAGTCCCTCTCTGCCTGGCGAAAATATGCATCAATCCTTGCTTAATGATTAAGTATCTTGATGCAATTTCCAGTCTTAAGAAGCACACATATGATATGACATGCCATGAGACTAGTTTCCCATTGTCCCGAAGGTGAGTCACAAAATCCAATAGTGATAGTGATCTTTTCCTTCTTGTAAGTTTTATGCATTTATTTGATTCAGAAATGATTTTAATCTATTTCCTTCTCAAAATTTATTTAAAGTTAAATATTCAACGTGTCTAAAATGTTGGACCTACATTAACTTCGTATAATTAGTGTCTAACCCATATATTATGTTAATAGGTGTCAAATGTGTTCAACAAGTATTAGAGTGTTTAAGGGTCTGACATAGTTGGACATGGACATACTAGCCAAACTAAAGTGTTCGTGCTTATTAGTATCCATCAACTTTGAAACCGTTTATAGTGACATAGAATGTCAACCATGTCTCTCATGCATACCTACTGCTAGATGCCTATTTTTGAGACTAGGCCATAGATTGAATTGAACCTCAAGCCAATATTGAGTACAATGTCGTGCACACCCATCACGAGCACAACAAGCATTGTTCAAGGAATTTTTCACTCCCCTTTGGAGATAATGAATCTTTTTTTTGTTCAGGATGTTCACGCATTACATTCCGAAGTAACTCTCCATGGAATGACATACTTTTGTGAAAGATCAAACTTTGTCTACCAAATGTTCGCTTAGGGAGAGGGACCCCGTTTACCTTACCCAATGATGCCGAAAGGTCCATGCCATAGAGTTAGAGCCTTCAATTATTATGAATATGTTGGGAGGGGTGATATGGAAAAACATGGTTTGACAATGAATTATTTCAGGTACCTAGTAGATTGGGACATATAGGAGAATAGGGAACAATTATTTGTTTTACAGGAGCTGCTAGTGTATTACAGCAATTATATACAACAATCATTTTGAAAAACCATCACTTTCTTTCC AAGCGGAGAAATGGATTATAGCTTAGCAGCGTTGAAGCTTCTGTGCAGGCAGCTCAACGACGCCCGCCAAGCTCCGTCCAACAACGCCGCCACACTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTTCGTCGACAGAGATAATGGTAAGCTGATTCTCGACGACGGCACCGGCACCGTCGAGCTCTCTCTTTCTGGCGACTTCCGCCAACGCCCTTGGAGCCTCGGAATGTATGTGATGGTTGTTGGCGCTTATGTCGTCCGGACGAATGAACCGTCCATTATTGCGGTCCACAAGATTGTTGATCTATCAATGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAATTTTCGATGTTCACGCATTACATTCCGAAGTAACTCTCCATGGAATGACATACTTTTGTGAAAGATCAAACTTTGTCTACCAAATGTTCGCTTAGGGAGAGGGACCCCGTTTACCTTACCCAATGATGCCGAAAGGTCCATGCCATAGAGTTAGAGCCTTCAATTATTATGAATATGTTGGGAGGGGTGATATGGAAAAACATGGTTTGACAATGAATTATTTCAGGTACCTAGTAGATTGGGACATATAGGAGAATAGGGAACAATTATTTGTTTTACAGGAGCTGCTAGTGTATTACAGCAATTATATACAACAATCATTTTGAAAAACCATCACTTTCTTTCC ATGGATTATAGCTTAGCAGCGTTGAAGCTTCTGTGCAGGCAGCTCAACGACGCCCGCCAAGCTCCGTCCAACAACGCCGCCACACTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTTCGTCGACAGAGATAATGGTAAGCTGATTCTCGACGACGGCACCGGCACCGTCGAGCTCTCTCTTTCTGGCGACTTCCGCCAACGCCCTTGGAGCCTCGGAATGTATGTGATGGTTGTTGGCGCTTATGTCGTCCGGACGAATGAACCGTCCATTATTGCGGTCCACAAGATTGTTGATCTATCAATGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAATTTTCGATGTTCACGCATTACATTCCGAAGTAA MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTGTVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVMEAYKMFYEPLVEEFSMFTHYIPK Homology
BLAST of CmoCh13G002740 vs. ExPASy Swiss-Prot
Match: Q96E14 (RecQ-mediated genome instability protein 2 OS=Homo sapiens OX=9606 GN=RMI2 PE=1 SV=2) HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06 Identity = 46/124 (37.10%), Postives = 61/124 (49.19%), Query Frame = 0
BLAST of CmoCh13G002740 vs. ExPASy Swiss-Prot
Match: Q5ZM20 (RecQ-mediated genome instability protein 2 OS=Gallus gallus OX=9031 GN=RMI2 PE=2 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 3.2e-05 Identity = 43/127 (33.86%), Postives = 61/127 (48.03%), Query Frame = 0
BLAST of CmoCh13G002740 vs. ExPASy Swiss-Prot
Match: A5PJU7 (RecQ-mediated genome instability protein 2 OS=Bos taurus OX=9913 GN=RMI2 PE=2 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 6.1e-04 Identity = 42/128 (32.81%), Postives = 65/128 (50.78%), Query Frame = 0
BLAST of CmoCh13G002740 vs. ExPASy TrEMBL
Match: A0A6J1HLJ4 (uncharacterized protein LOC111464675 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464675 PE=4 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 3.9e-70 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of CmoCh13G002740 vs. ExPASy TrEMBL
Match: A0A6J1I0C8 (uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342 PE=4 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 4.3e-69 Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0
BLAST of CmoCh13G002740 vs. ExPASy TrEMBL
Match: A0A6J1DF83 (recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020510 PE=4 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 2.7e-55 Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 0
BLAST of CmoCh13G002740 vs. ExPASy TrEMBL
Match: A0A5A7UD07 (RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00780 PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 2.3e-54 Identity = 110/134 (82.09%), Postives = 117/134 (87.31%), Query Frame = 0
BLAST of CmoCh13G002740 vs. ExPASy TrEMBL
Match: A0A1S3CGI5 (recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC103500657 PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 2.3e-54 Identity = 110/134 (82.09%), Postives = 117/134 (87.31%), Query Frame = 0
BLAST of CmoCh13G002740 vs. NCBI nr
Match: XP_022964663.1 (uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata] >XP_023519120.1 uncharacterized protein LOC111782580 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6583596.1 RecQ-mediated genome instability protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019296.1 RecQ-mediated genome instability protein 2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 273.9 bits (699), Expect = 8.1e-70 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of CmoCh13G002740 vs. NCBI nr
Match: XP_022970350.1 (uncharacterized protein LOC111469342 [Cucurbita maxima] >XP_022970351.1 uncharacterized protein LOC111469342 [Cucurbita maxima]) HSP 1 Score: 270.4 bits (690), Expect = 8.9e-69 Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0
BLAST of CmoCh13G002740 vs. NCBI nr
Match: XP_038894076.1 (uncharacterized protein LOC120082820 [Benincasa hispida]) HSP 1 Score: 237.7 bits (605), Expect = 6.4e-59 Identity = 116/135 (85.93%), Postives = 124/135 (91.85%), Query Frame = 0
BLAST of CmoCh13G002740 vs. NCBI nr
Match: XP_022152884.1 (recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_022152885.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia]) HSP 1 Score: 224.6 bits (571), Expect = 5.6e-55 Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 0
BLAST of CmoCh13G002740 vs. NCBI nr
Match: XP_008462275.1 (PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096.1 recQ-mediated genome instability protein 2 [Cucumis melo var. makuwa]) HSP 1 Score: 221.5 bits (563), Expect = 4.7e-54 Identity = 110/134 (82.09%), Postives = 117/134 (87.31%), Query Frame = 0
BLAST of CmoCh13G002740 vs. TAIR 10
Match: AT1G08390.1 (unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 183.7 bits (465), Expect = 1.0e-46 Identity = 88/137 (64.23%), Postives = 107/137 (78.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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