CmoCh13G002560 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G002560
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr13: 2131270 .. 2132000 (+)
RNA-Seq Expression	CmoCh13G002560
Synteny	CmoCh13G002560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGGCTATCAAACTTGAAAGATATTGTTACTGTTTCTTGCTGTTTTATGATGTGATGTTTTGTAGATGTCCTGAAATTGAATCTTGTAATGCCAATGTTCAGAATTTGTAGTTAAGGTGATAAATATGGGTGCTTTGATTTGGACGTTGGTTCATCACTTGATCATTCATTATTGCACTATCTGATGGCAATGGATCACATATAAACACAAAATATTGTAAATTTACTTTGGATTTTGGTTTCAGCAATGCATCAACATTTTCCATTCTTATCATTCAACAAAAGAATTTGATATCAGAATATTTCCCCTGCCAGATACATCCTTATAATTCAAACCCCAGGCAGATATATAGATAAGATGTTACATAATTGAAGAACCCCTTCCTATTTTCTAGGACTGTTGCATAATTTTCAACAAGTGTACAGGGAAAAGAATCACAAGAATGACCAGTTGACGAAGGAGAAGGCAAGACAGTGTACAGTAGACTCATCCTCGGTAAGAACTTTCCATGCAACGGTTTGTTCAAAGGATGCATGTCGCCCCATTGTCGACATGCAAATTCCAGCAGGAATGTAAGCAAAGCCCTACCGAAAACAAGTAAGTATTCAGTTCAGTTAGCATCATTACATTGTTAATCAATCTTGAAATAGTAAGTCATCATAAGTTTTCTTTATGCAGCATAAACACAACCAGCCATGCCAAGTCGAGCATGACAATGAACTGA

mRNA sequence

ATGAATTTGGCTATCAAACTTGAAAGATATTGTTACTGTTTCTTGCTGTTTTATGATGTGATGTTTTGTAGATGTCCTGAAATTGAATCTTGTAATGCCAATGTTCAGAATTTGGAAAAGAATCACAAGAATGACCAGTTGACGAAGGAGAAGGCAAGACAGTGTACAGTAGACTCATCCTCGGAATGTAAGCAAAGCCCTACCGAAAACAACATAAACACAACCAGCCATGCCAAGTCGAGCATGACAATGAACTGA

Coding sequence (CDS)

ATGAATTTGGCTATCAAACTTGAAAGATATTGTTACTGTTTCTTGCTGTTTTATGATGTGATGTTTTGTAGATGTCCTGAAATTGAATCTTGTAATGCCAATGTTCAGAATTTGGAAAAGAATCACAAGAATGACCAGTTGACGAAGGAGAAGGCAAGACAGTGTACAGTAGACTCATCCTCGGAATGTAAGCAAAGCCCTACCGAAAACAACATAAACACAACCAGCCATGCCAAGTCGAGCATGACAATGAACTGA

Protein sequence

MNLAIKLERYCYCFLLFYDVMFCRCPEIESCNANVQNLEKNHKNDQLTKEKARQCTVDSSSECKQSPTENNINTTSHAKSSMTMN

Homology

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BLAST of CmoCh13G002560 vs. NCBI nr
Match: KAG6583581.1 (CASP-like protein 5A2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 7.0e-13
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 39  EKNHKNDQLTKEKARQCTVDSSS-ECKQSPTENNINTTSHAKSSMTMN 86
           EKNHKNDQLTKEKARQCTVDSSS ECKQSPTENNINTTSHAKSS TMN
Sbjct: 173 EKNHKNDQLTKEKARQCTVDSSSQECKQSPTENNINTTSHAKSSTTMN 220

The following BLAST results are available for this feature:

BLAST of CmoCh13G002560 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G002560 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G002560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583581.1	7.0e-13	95.83	CASP-like protein 5A2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh13G002560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G002560.1	CmoCh13G002560.1	mRNA