CmoCh13G002540 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G002540
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L19, putative
LocationCmo_Chr13: 2124761 .. 2126417 (-)
RNA-Seq ExpressionCmoCh13G002540
SyntenyCmoCh13G002540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTATTCGCATTTCTGAGTACTTTTGGAAAAGAAGTAATTTCATTTTATTGTCCAGTCTGTTTGATTTCGATATATTGTTTTCTTTTCCCCACAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGTAGAGTTCATTTCAGTCAAATACTATATCAGCAGTTGTAGATGAGGTTACTGAACAATTTTCTGGCTTTTGCTGTCTTGTGTGAACAGGAAGTACCTGAGAACAAGCGACGTGTCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGTCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTGTAAGTAAATGCTGATTTAAAAATCTGATACAAATGTATTAGAACATGATGAACGCTGCGATCACACGTGTTGAAGTTGGTGTATTAATATGAACATACATGTGTTTATTCTTCTTGTGTATGTCTATTTCTGATAGCACTTTGCTTATGACTAAACAAGTGGGTGATGCATGACAGATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAGCCAGCAAGCTTTCTATTCGGTGGGGTCAGAGGTGTATCCGTAACAAAGGTGCGCTGTAATCATTTTTTAGCAAGAAATCTCAAGAGTTTTCATGATTACCTTATCCTTGTTTATGCATGGAGAACCAACCTGAGTTTTCATGATCCGGCTGAAATAAAAAAAAAAAA

mRNA sequence

ATGCAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTGTCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAGCCAGCAAGCTTTCTATTCGGTGGGGTCAGAGGTGTATCCGTAACAAAGGTGCGCTGTAATCATTTTTTAGCAAGAAATCTCAAGAGTTTTCATGATTACCTTATCCTTGTTTATGCATGGAGAACCAACCTGAGTTTTCATGATCCGGCTGAAATAAAAAAAAAAAA

Coding sequence (CDS)

ATGCAGATTTTAGATAAGGAAGCTATTGGGGAGGTAAAAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTGTCTCAACATTGAAAGGCATTGTAATAGCAAGACGAAATGCAGGTCTTAACACAACTTTTAGATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATTAAGAAGGCTAGTTGCTGGTGTTGGGATTGAATCCCTCTTCCCTCTATACTCACCAAACATAAAAGAAATTATGGTTTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAG

Protein sequence

MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAKLYYLRDKMNALKKH
Homology
[Close]
BLAST of CmoCh13G002540 vs. ExPASy Swiss-Prot
Match: Q8W463 (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-24
Identity = 64/140 (45.71%), Postives = 91/140 (65.00%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           M IL+++AI EV +  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 115 MGILNQKAI-EVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 174

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                +RR++AG+G+E +FP+YSPNIKEI V+
Sbjct: 175 R--------------------------------IRRIIAGIGVEIVFPIYSPNIKEIKVV 221

Query: 121 DKKKVRRAKLYYLRDKMNAL 141
             +KVRRA+LYYLRDK+  L
Sbjct: 235 SHRKVRRARLYYLRDKLPRL 221

[Close]
BLAST of CmoCh13G002540 vs. ExPASy Swiss-Prot
Match: Q8RXX5 (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.1e-24
Identity = 63/140 (45.00%), Postives = 90/140 (64.29%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           M +L+K+AI EV +  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 119 MGLLNKKAI-EVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 178

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                +RR++AG+G+E +FP+YSPNIKEI V+
Sbjct: 179 R--------------------------------IRRIIAGIGVEIVFPIYSPNIKEIKVV 225

Query: 121 DKKKVRRAKLYYLRDKMNAL 141
             +KVRRA+LYYLRDK+  L
Sbjct: 239 SHRKVRRARLYYLRDKLPRL 225

[Close]
BLAST of CmoCh13G002540 vs. ExPASy Swiss-Prot
Match: P82413 (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 5.3e-24
Identity = 64/140 (45.71%), Postives = 89/140 (63.57%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           M IL+K+A+   ++  R +P I+ G IVQ+++EVPENKRR+S  KGIVI+R+NAG++TT 
Sbjct: 123 MGILNKKAVHAAEEL-RPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTI 182

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                +RR++AGVG+E +FPLYSPNIKEI V+
Sbjct: 183 R--------------------------------IRRIIAGVGVEIVFPLYSPNIKEIKVV 229

Query: 121 DKKKVRRAKLYYLRDKMNAL 141
             +KVR+A+LYYLRDK+  L
Sbjct: 243 SHRKVRKARLYYLRDKLPRL 229

[Close]
BLAST of CmoCh13G002540 vs. ExPASy Swiss-Prot
Match: A5G0G7 (50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-13
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNTT 60
           +Q +D E IG++ +A R +PD KPG  +++ V V E +R R+   +G+ IAR N G+N+ 
Sbjct: 4   IQTIDAEQIGKLAEA-RAVPDFKPGDNLRVSVRVTEGERTRIQAFEGVCIARSNRGINSN 63

Query: 61  FRLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMV 120
           F                                 +R++  G G+E +FPLYSPN+ EI V
Sbjct: 64  F--------------------------------TVRKISYGEGVERVFPLYSPNVTEIAV 107

Query: 121 LDKKKVRRAKLYYLRDK 137
             +  VRRAKLYYLR +
Sbjct: 124 TRRGVVRRAKLYYLRGR 107

[Close]
BLAST of CmoCh13G002540 vs. ExPASy Swiss-Prot
Match: B9K8P7 (50S ribosomal protein L19 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NBRC 107923 / NS-E) OX=309803 GN=rplS PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-13
Identity = 49/126 (38.89%), Postives = 69/126 (54.76%), Query Frame = 0 

Query: 11  EVKKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNTTFRLRRLVAGV 70
           E K  ++EIPD +PG  V++ V+V E  R R    +GIVIA+R +G+N TF +RR+ +  
Sbjct: 11  EKKYEKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINRTFTVRRIGS-- 70

Query: 71  GIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVLDKKKVRRAK 130
                                         GVG+E +FP +SP +++I V+ K KVRRAK
Sbjct: 71  -----------------------------HGVGVERIFPFHSPVVEKIEVVRKGKVRRAK 105

Query: 131 LYYLRD 136
           LYYLRD
Sbjct: 131 LYYLRD 105

[Close]
BLAST of CmoCh13G002540 vs. ExPASy TrEMBL
Match: A0A6J1I0B3 (50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469331 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 107/143 (74.83%), Postives = 107/143 (74.83%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEA GEV KAQREIPDIK GYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF
Sbjct: 153 MQILDKEAFGEV-KAQREIPDIKSGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 212

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                LRRLVAGVGIESLFPLYSPNIKEI VL
Sbjct: 213 R--------------------------------LRRLVAGVGIESLFPLYSPNIKEIKVL 262

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDKMNALKKH
Sbjct: 273 DKKKVRRAKLYYLRDKMNALKKH 262

[Close]
BLAST of CmoCh13G002540 vs. ExPASy TrEMBL
Match: A0A6J1CB38 (50S ribosomal protein L19, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111009074 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.5e-42
Identity = 107/142 (75.35%), Postives = 107/142 (75.35%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEAI EV KAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF
Sbjct: 159 MQILDKEAIEEV-KAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 218

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                LRRLVAGVGIESLFPLYSPNIKEI VL
Sbjct: 219 R--------------------------------LRRLVAGVGIESLFPLYSPNIKEIKVL 267

Query: 121 DKKKVRRAKLYYLRDKMNALKK 143
           DKKKVRRAKLYYLRDKMNALKK
Sbjct: 279 DKKKVRRAKLYYLRDKMNALKK 267

[Close]
BLAST of CmoCh13G002540 vs. ExPASy TrEMBL
Match: A0A6P4B859 (50S ribosomal protein L19, chloroplastic-like OS=Ziziphus jujuba OX=326968 GN=LOC107428836 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.7e-42
Identity = 103/143 (72.03%), Postives = 107/143 (74.83%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEA+GEV KA REIPDIKPGYIVQLKVEVP+NKRRVS LKGIVIARRNAGLNTTF
Sbjct: 143 MQILDKEAVGEV-KAHREIPDIKPGYIVQLKVEVPDNKRRVSILKGIVIARRNAGLNTTF 202

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                +RRLVAGVG+ESLFPLYSPNIKEI VL
Sbjct: 203 R--------------------------------IRRLVAGVGVESLFPLYSPNIKEIKVL 252

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDKMNALKKH
Sbjct: 263 DKKKVRRAKLYYLRDKMNALKKH 252

[Close]
BLAST of CmoCh13G002540 vs. ExPASy TrEMBL
Match: A0A6J1K1Y5 (50S ribosomal protein L19, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490302 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.7e-42
Identity = 105/143 (73.43%), Postives = 108/143 (75.52%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEAI EV KA+REIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF
Sbjct: 160 MQILDKEAIEEV-KAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 219

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                LRR+VAGVGIESLFPLYSPNIKEI VL
Sbjct: 220 R--------------------------------LRRVVAGVGIESLFPLYSPNIKEITVL 269

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDKMNALK+H
Sbjct: 280 DKKKVRRAKLYYLRDKMNALKRH 269

[Close]
BLAST of CmoCh13G002540 vs. ExPASy TrEMBL
Match: A0A6J1K3G4 (50S ribosomal protein L19, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490302 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.7e-42
Identity = 105/143 (73.43%), Postives = 108/143 (75.52%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEAI EV KA+REIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF
Sbjct: 161 MQILDKEAIEEV-KAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 220

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                LRR+VAGVGIESLFPLYSPNIKEI VL
Sbjct: 221 R--------------------------------LRRVVAGVGIESLFPLYSPNIKEITVL 270

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDKMNALK+H
Sbjct: 281 DKKKVRRAKLYYLRDKMNALKRH 270

[Close]
BLAST of CmoCh13G002540 vs. NCBI nr
Match: KAG7019281.1 (50S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-46
Identity = 111/143 (77.62%), Postives = 111/143 (77.62%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF
Sbjct: 137 MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 196

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                LRRLVAGVGIESLFPLYSPNIKEIMVL
Sbjct: 197 R--------------------------------LRRLVAGVGIESLFPLYSPNIKEIMVL 247

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDKMNALKKH
Sbjct: 257 DKKKVRRAKLYYLRDKMNALKKH 247

[Close]
BLAST of CmoCh13G002540 vs. NCBI nr
Match: KAG6583579.1 (50S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-46
Identity = 111/143 (77.62%), Postives = 111/143 (77.62%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF
Sbjct: 123 MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 182

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                LRRLVAGVGIESLFPLYSPNIKEIMVL
Sbjct: 183 R--------------------------------LRRLVAGVGIESLFPLYSPNIKEIMVL 233

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDKMNALKKH
Sbjct: 243 DKKKVRRAKLYYLRDKMNALKKH 233

[Close]
BLAST of CmoCh13G002540 vs. NCBI nr
Match: XP_023522393.1 (50S ribosomal protein L19, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 4.9e-43
Identity = 108/143 (75.52%), Postives = 109/143 (76.22%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEAIGEV KAQREIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTF
Sbjct: 126 MQILDKEAIGEV-KAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTF 185

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                LRRLVAGVGIESLFPLYSPNIKEIMVL
Sbjct: 186 R--------------------------------LRRLVAGVGIESLFPLYSPNIKEIMVL 235

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKL YLRDKMNALKKH
Sbjct: 246 DKKKVRRAKLPYLRDKMNALKKH 235

[Close]
BLAST of CmoCh13G002540 vs. NCBI nr
Match: XP_022970336.1 (50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_022970337.1 50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-42
Identity = 107/143 (74.83%), Postives = 107/143 (74.83%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEA GEV KAQREIPDIK GYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF
Sbjct: 153 MQILDKEAFGEV-KAQREIPDIKSGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 212

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                LRRLVAGVGIESLFPLYSPNIKEI VL
Sbjct: 213 R--------------------------------LRRLVAGVGIESLFPLYSPNIKEIKVL 262

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDKMNALKKH
Sbjct: 273 DKKKVRRAKLYYLRDKMNALKKH 262

[Close]
BLAST of CmoCh13G002540 vs. NCBI nr
Match: XP_022137703.1 (50S ribosomal protein L19, chloroplastic-like [Momordica charantia])

HSP 1 Score: 180.6 bits (457), Expect = 9.3e-42
Identity = 107/142 (75.35%), Postives = 107/142 (75.35%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQILDKEAI EV KAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF
Sbjct: 159 MQILDKEAIEEV-KAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 218

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                LRRLVAGVGIESLFPLYSPNIKEI VL
Sbjct: 219 R--------------------------------LRRLVAGVGIESLFPLYSPNIKEIKVL 267

Query: 121 DKKKVRRAKLYYLRDKMNALKK 143
           DKKKVRRAKLYYLRDKMNALKK
Sbjct: 279 DKKKVRRAKLYYLRDKMNALKK 267

[Close]
BLAST of CmoCh13G002540 vs. TAIR 10
Match: AT4G11630.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-40
Identity = 91/143 (63.64%), Postives = 106/143 (74.13%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQI+DKEA+ EV ++ REIP+IKPGYIVQLKVEVPENKRRVS +KG+VIARRNAGLN+TF
Sbjct: 116 MQIVDKEAVEEV-RSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 175

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                +RRLVAGVG+ES+FPLYSPN++EI V+
Sbjct: 176 R--------------------------------IRRLVAGVGVESMFPLYSPNLREIKVV 225

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDK+NALKKH
Sbjct: 236 DKKKVRRAKLYYLRDKVNALKKH 225

[Close]
BLAST of CmoCh13G002540 vs. TAIR 10
Match: AT5G11750.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-40
Identity = 91/143 (63.64%), Postives = 105/143 (73.43%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQI+DKEA+ EV+   REIP+IKPGYIVQLKVEVPENKRRVS +KG+VIARRNAGLN+TF
Sbjct: 120 MQIVDKEAVEEVRNL-REIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 179

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                +RRLVAGVG+ES+FPLYSPN++EI V+
Sbjct: 180 R--------------------------------IRRLVAGVGVESMFPLYSPNLREIKVV 229

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLRDK+NALKKH
Sbjct: 240 DKKKVRRAKLYYLRDKVNALKKH 229

[Close]
BLAST of CmoCh13G002540 vs. TAIR 10
Match: AT1G24240.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 159.1 bits (401), Expect = 2.7e-39
Identity = 89/143 (62.24%), Postives = 104/143 (72.73%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           MQI+DKEA+ EV +  REIP+IKPGYIVQLKVEVPENKRRVS +KG+VIARRNAGLN+TF
Sbjct: 113 MQIVDKEAVEEV-RTLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 172

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                +RRLVAGVG+ES+FPLYSPN++ I V+
Sbjct: 173 R--------------------------------IRRLVAGVGVESMFPLYSPNLRVIKVV 222

Query: 121 DKKKVRRAKLYYLRDKMNALKKH 144
           DKKKVRRAKLYYLR+K+NALKKH
Sbjct: 233 DKKKVRRAKLYYLREKVNALKKH 222

[Close]
BLAST of CmoCh13G002540 vs. TAIR 10
Match: AT4G17560.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-25
Identity = 64/140 (45.71%), Postives = 91/140 (65.00%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           M IL+++AI EV +  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 115 MGILNQKAI-EVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 174

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                +RR++AG+G+E +FP+YSPNIKEI V+
Sbjct: 175 R--------------------------------IRRIIAGIGVEIVFPIYSPNIKEIKVV 221

Query: 121 DKKKVRRAKLYYLRDKMNAL 141
             +KVRRA+LYYLRDK+  L
Sbjct: 235 SHRKVRRARLYYLRDKLPRL 221

[Close]
BLAST of CmoCh13G002540 vs. TAIR 10
Match: AT5G47190.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-25
Identity = 63/140 (45.00%), Postives = 90/140 (64.29%), Query Frame = 0 

Query: 1   MQILDKEAIGEVKKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 60
           M +L+K+AI EV +  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 119 MGLLNKKAI-EVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 178

Query: 61  RLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLLRRLVAGVGIESLFPLYSPNIKEIMVL 120
           R                                +RR++AG+G+E +FP+YSPNIKEI V+
Sbjct: 179 R--------------------------------IRRIIAGIGVEIVFPIYSPNIKEIKVV 225

Query: 121 DKKKVRRAKLYYLRDKMNAL 141
             +KVRRA+LYYLRDK+  L
Sbjct: 239 SHRKVRRARLYYLRDKLPRL 225

The following BLAST results are available for this feature:
BLAST of CmoCh13G002540 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8W4632.4e-2445.7150S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At... [more]
Q8RXX54.1e-2445.0050S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At... [more]
P824135.3e-2445.7150S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 P... [more]
A5G0G71.9e-1335.7750S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl... [more]
B9K8P71.9e-1338.8950S ribosomal protein L19 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 435... [more]
BLAST of CmoCh13G002540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I0B31.5e-4274.8350S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucurbita maxima O... [more]
A0A6J1CB384.5e-4275.3550S ribosomal protein L19, chloroplastic-like OS=Momordica charantia OX=3673 GN=... [more]
A0A6P4B8597.7e-4272.0350S ribosomal protein L19, chloroplastic-like OS=Ziziphus jujuba OX=326968 GN=LO... [more]
A0A6J1K1Y57.7e-4273.4350S ribosomal protein L19, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=... [more]
A0A6J1K3G47.7e-4273.4350S ribosomal protein L19, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=... [more]
BLAST of CmoCh13G002540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019281.12.8e-4677.6250S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
KAG6583579.12.8e-4677.6250S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_023522393.14.9e-4375.5250S ribosomal protein L19, chloroplastic-like isoform X1 [Cucurbita pepo subsp. ... [more]
XP_022970336.13.2e-4274.8350S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucurbita maxima] >X... [more]
XP_022137703.19.3e-4275.3550S ribosomal protein L19, chloroplastic-like [Momordica charantia][more]
BLAST of CmoCh13G002540 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G11630.11.1e-4063.64Ribosomal protein L19 family protein [more]
AT5G11750.11.1e-4063.64Ribosomal protein L19 family protein [more]
AT1G24240.12.7e-3962.24Ribosomal protein L19 family protein [more]
AT4G17560.11.7e-2545.71Ribosomal protein L19 family protein [more]
AT5G47190.12.9e-2545.00Ribosomal protein L19 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038657Ribosomal protein L19 superfamilyGENE3D2.30.30.790coord: 1..93
e-value: 1.6E-17
score: 65.4
coord: 94..143
e-value: 2.9E-17
score: 64.6
IPR001857Ribosomal protein L19PFAMPF01245Ribosomal_L19coord: 11..85
e-value: 3.0E-16
score: 59.3
coord: 86..138
e-value: 1.6E-15
score: 57.0
IPR001857Ribosomal protein L19PIRSFPIRSF002191Ribosomal_L19coord: 93..142
e-value: 4.8E-18
score: 63.0
coord: 77..94
e-value: 3.7
score: 5.0
coord: 1..88
e-value: 5.4E-20
score: 69.4
IPR001857Ribosomal protein L19PANTHERPTHR15680RIBOSOMAL PROTEIN L19coord: 1..77
coord: 93..140
NoneNo IPR availablePANTHERPTHR15680:SF939S RIBOSOMAL PROTEIN L19, MITOCHONDRIALcoord: 1..77
coord: 93..140
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 15..85
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 93..138

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G002540.1CmoCh13G002540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome