CmoCh13G002260 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G002260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CCHC-type domain-containing protein
Location	Cmo_Chr13: 1763237 .. 1765306 (+)
RNA-Seq Expression	CmoCh13G002260
Synteny	CmoCh13G002260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGCTGGTTGGCAATAACTATAGTTATTGGAAGTTATGCATGGAAGCTTATCTACAAGGGCAAGATTTATGGGATTTAATTGAAGGTGATGACACAGAAATTCCAGCCGATACTCCACAAAATGCAAAATTACGTCAACAATGGAAGATCAAGTGCGGAAAAACCTTATTTACCTTGCGAACTTTGATTAGCAAGGAGTATATTGATCATGTTCGTGATTTAAAGTCACCAAAGCAAGTATGGGATACACTTCAAAAGTTGTTCACCAAGAAAAATACCGCTCGACTGCAATTTCTAGAGAATGAACTAGCTATGGTAACTCAAGGTAATTTTTCTGTTGAAGAATATTTTTTGAAGGTGAAAAATCTATGTTCTGAAATTTCAGAATTAGATGCTGAGGAGCCAGTGAGTGAGGCTCGATTACGGCGTTATCTTATTCGTGGATTACGAAAAGAGTTTATGCCCTTTGTTTCCTCAATACAAGGGTGGGCAAATCAACCTACGGTAATTGAATTGGAGAATCTTCTTTCCAATCAGGAAGCCTTAAGCAAATGACTAGCAGGAACGAGTTTTCCCCAAAGTCAGAAGATGTGTTATATGTCAAAGATCAAAGGAGACAGAATTTTCACTCAAAGCTTTCATCAAGCAATGGGAATCAATTCAGAAGTGAGGAGTCGTCAAAGAAACCAATTAAAACTTGTTACAGGTGCGGAAAACCAGGCCATTTTCAACGGGATTGTGAGGTGAAAGTGGTGTGTCATCATTGCGGAAAGTCAGGCCATATTAAACCAAATTGCAGAGTCAAGATGCAGGAATCAGAAGCAAATGCGGTACATGAAAATAGAAGTTCTCCAGATCCAATTTGGGAATATTGCTTAACCACTGAGGTTCTTAACCAGCCAACAAACGTGACTTCAGCCGTATATCAAGATGATGTTTCTATAGGTGATCAAAATTCTAATTCGACTACTTACGCTTCTGAGTTTGATTCTCTCCAAATTTCGCATCTGGACTCTCTCTTTTTCTCCGATTTCAATTCTATTGCCCCTGATGACCCTTCTGTTTACTCCACGGCCTTGGATTTGAGATTCGACGAAAATGAAGTTGTCGAGCTAATGTTTGGCGGTCTTTACCTCCCCTCTGAGGCTGACGATTTTCTCATCTTGGAGAATTTAGATCAAACTACCAATTTGCAGGATTCGGCTACTGATGCTCCGCCCCCAGTCTGACCCAGAAATAGCTGCACTGCTTGATGATGATGATTTATCACGATTTGGTTCTGATGTTGAGGACTTGGAGGAGGATTTCGTAGTTCAAGTAAATTTATGTGAAGAAGGGGAGGATGGTTCAATGGATAATAAGTTTAGTGTGGTTAAGGATTCTGAGAAGGCGACAGGAAGCCAGAATATTATTAATAATAAATCTTCTGGCGATGACATTTTTGAGGATGCAGATGTTGACCATGTGGAGGATGATGTTGATAAGCCACGAACTCGACAGCTTTTGGATGATCGATTTGATACCCTCTTAAGTCAGGACTATGCATCTAGTGACAACGGTGACAGTGCTTGTGATGAGCATGATGGTTGGGTAGCTGAAGAAGATGAGTCCCTTGCTCAAAAGCTCAAGCATGCCCTTGATGATCATAGTAAGGATGACTTGGACCTTGACCAAGGATATAAAGCTTCTGCAGATCAAGAGCTTTTGCAGTCTACTAGTGATGTAATTCACCGGTGTATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTCTCATTAGAATTGAATCGCTGCGATGTGGAACTTATTAAGAAGGAAATCATTGAACATGATGTGTCAGTGTCTTATTCAGGTGGTGGCGTGCCTAAGAAGTCCATACGCAAGCCTAACTGGAAGAAATTCTTCGTAGATTATTTTGTTCGAGAGAACGTGTTAACGCAGGATGTTGAATTGCAGGAAATACATACTAATGAGCAAGTTGTAGACATATTTACTAAGGCACTTGCCAAAGTGAAGTTTGAAGTTTTTCGTAGAAGCTCTCGGAGTTATTGA

mRNA sequence

ATGGAAAAGCTGGTTGGCAATAACTATAGTTATTGGAAGTTATGCATGGAAGCTTATCTACAAGGGCAAGATTTATGGGATTTAATTGAAGGTGATGACACAGAAATTCCAGCCGATACTCCACAAAATGCAAAATTACGTCAACAATGGAAGATCAAGTGCGGAAAAACCTTATTTACCTTGCGAACTTTGATTAGCAAGGAGTATATTGATCATGTTCGTGATTTAAAGTCACCAAAGCAAGTATGGGATACACTTCAAAAGTTGTTCACCAAGAAAAATACCGCTCGACTGCAATTTCTAGAGAATGAACTAGCTATGGTAACTCAAGGAAGCCTTAAGCAAATGACTAGCAGGAACGAGTTTTCCCCAAAGTCAGAAGATGTGTTATATGTCAAAGATCAAAGGAGACAGAATTTTCACTCAAAGCTTTCATCAAGCAATGGGAATCAATTCAGAAGTGAGGAGTCGTCAAAGAAACCAATTAAAACTTGTTACAGGTGCGGAAAACCAGGCCATTTTCAACGGGATTGTGAGGTGAAAGTGGTGTGTCATCATTGCGGAAAGTCAGGCCATATTAAACCAAATTGCAGAGTCAAGATGCAGGAATCAGAAGCAAATGCGGTACATGAAAATAGAAGTTCTCCAGATCCAATTTGGGAATATTGCTTAACCACTGAGGTTCTTAACCAGCCAACAAACGTGACTTCAGCCGTATATCAAGATGATGTTTCTATAGGTGATCAAAATTCTAATTCGACTACTTACGCTTCTGAGTTTGATTCTCTCCAAATTTCGCATCTGGACTCTCTCTTTTTCTCCGATTTCAATTCTATTGCCCCTGATGACCCTTCTGTTTACTCCACGGCCTTGGATTTGAGATTCGACGAAAATGAAGTTGTCGAGCTAATGATTCGGCTACTGATGCTCCGCCCCCAGTCTGACCCAGAAATAGCTGCACTGCTTGATGATGATGATTTATCACGATTTGGTTCTGATGTTGAGGACTTGGAGGAGGATTTCGTAGTTCAAGTAAATTTATGTGAAGAAGGGGAGGATGGTTCAATGGATAATAAGTTTAGTGTGGTTAAGGATTCTGAGAAGGCGACAGGAAGCCAGAATATTATTAATAATAAATCTTCTGGCGATGACATTTTTGAGGATGCAGATGTTGACCATGTGGAGGATGATGTTGATAAGCCACGAACTCGACAGCTTTTGGATGATCGATTTGATACCCTCTTAAGTCAGGACTATGCATCTAGTGACAACGGTGACAGTGCTTGTGATGAGCATGATGGTTGGGTAGCTGAAGAAGATGAGTCCCTTGCTCAAAAGCTCAAGCATGCCCTTGATGATCATAGTAAGGATGACTTGGACCTTGACCAAGGATATAAAGCTTCTGCAGATCAAGAGCTTTTGCAGTCTACTAGTGATGTAATTCACCGGTGTATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTCTCATTAGAATTGAATCGCTGCGATGTGGAACTTATTAAGAAGGAAATCATTGAACATGATGTGTCAGTGTCTTATTCAGGTGGTGGCGTGCCTAAGAAGTCCATACGCAAGCCTAACTGGAAGAAATTCTTCGTAGATTATTTTGTTCGAGAGAACGTGTTAACGCAGGATGTTGAATTGCAGGAAATACATACTAATGAGCAAGTTGTAGACATATTTACTAAGGCACTTGCCAAAGTGAAGTTTGAAGTTTTTCGTAGAAGCTCTCGGAGTTATTGA

Coding sequence (CDS)

ATGGAAAAGCTGGTTGGCAATAACTATAGTTATTGGAAGTTATGCATGGAAGCTTATCTACAAGGGCAAGATTTATGGGATTTAATTGAAGGTGATGACACAGAAATTCCAGCCGATACTCCACAAAATGCAAAATTACGTCAACAATGGAAGATCAAGTGCGGAAAAACCTTATTTACCTTGCGAACTTTGATTAGCAAGGAGTATATTGATCATGTTCGTGATTTAAAGTCACCAAAGCAAGTATGGGATACACTTCAAAAGTTGTTCACCAAGAAAAATACCGCTCGACTGCAATTTCTAGAGAATGAACTAGCTATGGTAACTCAAGGAAGCCTTAAGCAAATGACTAGCAGGAACGAGTTTTCCCCAAAGTCAGAAGATGTGTTATATGTCAAAGATCAAAGGAGACAGAATTTTCACTCAAAGCTTTCATCAAGCAATGGGAATCAATTCAGAAGTGAGGAGTCGTCAAAGAAACCAATTAAAACTTGTTACAGGTGCGGAAAACCAGGCCATTTTCAACGGGATTGTGAGGTGAAAGTGGTGTGTCATCATTGCGGAAAGTCAGGCCATATTAAACCAAATTGCAGAGTCAAGATGCAGGAATCAGAAGCAAATGCGGTACATGAAAATAGAAGTTCTCCAGATCCAATTTGGGAATATTGCTTAACCACTGAGGTTCTTAACCAGCCAACAAACGTGACTTCAGCCGTATATCAAGATGATGTTTCTATAGGTGATCAAAATTCTAATTCGACTACTTACGCTTCTGAGTTTGATTCTCTCCAAATTTCGCATCTGGACTCTCTCTTTTTCTCCGATTTCAATTCTATTGCCCCTGATGACCCTTCTGTTTACTCCACGGCCTTGGATTTGAGATTCGACGAAAATGAAGTTGTCGAGCTAATGATTCGGCTACTGATGCTCCGCCCCCAGTCTGACCCAGAAATAGCTGCACTGCTTGATGATGATGATTTATCACGATTTGGTTCTGATGTTGAGGACTTGGAGGAGGATTTCGTAGTTCAAGTAAATTTATGTGAAGAAGGGGAGGATGGTTCAATGGATAATAAGTTTAGTGTGGTTAAGGATTCTGAGAAGGCGACAGGAAGCCAGAATATTATTAATAATAAATCTTCTGGCGATGACATTTTTGAGGATGCAGATGTTGACCATGTGGAGGATGATGTTGATAAGCCACGAACTCGACAGCTTTTGGATGATCGATTTGATACCCTCTTAAGTCAGGACTATGCATCTAGTGACAACGGTGACAGTGCTTGTGATGAGCATGATGGTTGGGTAGCTGAAGAAGATGAGTCCCTTGCTCAAAAGCTCAAGCATGCCCTTGATGATCATAGTAAGGATGACTTGGACCTTGACCAAGGATATAAAGCTTCTGCAGATCAAGAGCTTTTGCAGTCTACTAGTGATGTAATTCACCGGTGTATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTCTCATTAGAATTGAATCGCTGCGATGTGGAACTTATTAAGAAGGAAATCATTGAACATGATGTGTCAGTGTCTTATTCAGGTGGTGGCGTGCCTAAGAAGTCCATACGCAAGCCTAACTGGAAGAAATTCTTCGTAGATTATTTTGTTCGAGAGAACGTGTTAACGCAGGATGTTGAATTGCAGGAAATACATACTAATGAGCAAGTTGTAGACATATTTACTAAGGCACTTGCCAAAGTGAAGTTTGAAGTTTTTCGTAGAAGCTCTCGGAGTTATTGA

Protein sequence

MEKLVGNNYSYWKLCMEAYLQGQDLWDLIEGDDTEIPADTPQNAKLRQQWKIKCGKTLFTLRTLISKEYIDHVRDLKSPKQVWDTLQKLFTKKNTARLQFLENELAMVTQGSLKQMTSRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPIKTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESEANAVHENRSSPDPIWEYCLTTEVLNQPTNVTSAVYQDDVSIGDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVELMIRLLMLRPQSDPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVDIFTKALAKVKFEVFRRSSRSY

Homology

[Close]

BLAST of CmoCh13G002260 vs. ExPASy Swiss-Prot
Match: P03370 (Gag-Pol polyprotein OS=Maedi visna virus (strain 1514) OX=11742 GN=pol PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 6.9e-09
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 165 CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESE 206
           CY CGKPGH  R C   ++CHHCGK GH++ +CR K Q+ +
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQGK 427

[Close]

BLAST of CmoCh13G002260 vs. ExPASy Swiss-Prot
Match: P23426 (Gag-Pol polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS1) OX=11743 GN=pol PE=3 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 6.9e-09
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 165 CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESE 206
           CY CGKPGH  R C   ++CHHCGK GH++ +CR K Q+ +
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQGK 427

[Close]

BLAST of CmoCh13G002260 vs. ExPASy Swiss-Prot
Match: P23427 (Gag-Pol polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS2) OX=11744 GN=pol PE=3 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 6.9e-09
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 165 CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESE 206
           CY CGKPGH  R C   ++CHHCGK GH++ +CR K Q+ +
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQGK 427

[Close]

BLAST of CmoCh13G002260 vs. ExPASy Swiss-Prot
Match: P35956 (Gag-Pol polyprotein OS=Maedi visna virus (strain KV1772) OX=36374 GN=pol PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 6.9e-09
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 165 CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESE 206
           CY CGKPGH  R C   ++CHHCGK GH++ +CR K Q+ +
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQGK 427

[Close]

BLAST of CmoCh13G002260 vs. ExPASy Swiss-Prot
Match: P03352 (Gag polyprotein OS=Maedi visna virus (strain 1514) OX=11742 GN=gag PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.0e-09
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 165 CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQE 204
           CY CGKPGH  R C   ++CHHCGK GH++ +CR K Q+
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQ 425

[Close]

BLAST of CmoCh13G002260 vs. ExPASy TrEMBL
Match: A0A6J1HJ50 (uncharacterized protein LOC111464046 OS=Cucurbita moschata OX=3662 GN=LOC111464046 PE=4 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 2.9e-143
Identity = 287/369 (77.78%), Postives = 289/369 (78.32%), Query Frame = 0


Query: 253 STTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVELMI------- 312
           STTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVEL         
Sbjct: 11  STTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVELTFDDLDGLY 70

Query: 313 ------RLLMLR----------------PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVV 372
                   L+L                 PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVV
Sbjct: 71  LPSEADDFLILENLDQTTNLQDSATDAPPQSDPEIAALLDDDDLSRFGSDVEDLEEDFVV 130

Query: 373 QVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRT 432
           Q                                           DADVDHVEDDVDKPRT
Sbjct: 131 Q-------------------------------------------DADVDHVEDDVDKPRT 190

Query: 433 RQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQ 492
           RQLLDDRFD LLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQ
Sbjct: 191 RQLLDDRFDILLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQ 250

Query: 493 GYKASADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSV 552
           GYKAS DQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRC+VELIKKEIIEHDVSV
Sbjct: 251 GYKASTDQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCNVELIKKEIIEHDVSV 310

Query: 553 SYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVDIFTKALAKVKFE 593
           SYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQV DIFTKALAKVKFE
Sbjct: 311 SYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVADIFTKALAKVKFE 336

[Close]

BLAST of CmoCh13G002260 vs. ExPASy TrEMBL
Match: A0A6J1FJD8 (protein LTV1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111445999 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.1e-78
Identity = 163/211 (77.25%), Postives = 179/211 (84.83%), Query Frame = 0


Query: 296 DENEVVELMIRLLMLRPQS--DPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGED 355
           DEN + ++  + + ++ Q+  DPEIAALLDDDDLSRFGSDVEDLEEDFVVQ NLCEEGED
Sbjct: 171 DENIMYKVASKTVGVKVQNAIDPEIAALLDDDDLSRFGSDVEDLEEDFVVQANLCEEGED 230

Query: 356 GSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDT 415
           GS DNKFSV +DS++ATGSQNI+NNKS GDDIFEDADVDHVEDDVDKPRTR+LLDD+FDT
Sbjct: 231 GSTDNKFSVAEDSDRATGSQNIVNNKSFGDDIFEDADVDHVEDDVDKPRTRRLLDDQFDT 290

Query: 416 LLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKA------ 475
           LLS+DYAS D+G S CDEHDGWVAEEDES AQKLKHAL DHSKDDLDLDQGYKA      
Sbjct: 291 LLSRDYASGDDGGSDCDEHDGWVAEEDESFAQKLKHALGDHSKDDLDLDQGYKAPADILS 350

Query: 476 ----SADQELLQSTSDVIHRCMEYAESAQVE 495
               SADQELLQS SDVIHRCMEYAE  Q E
Sbjct: 351 GKEGSADQELLQSASDVIHRCMEYAEKYQNE 381

[Close]

BLAST of CmoCh13G002260 vs. ExPASy TrEMBL
Match: A0A6J1J360 (protein LTV1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480921 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.8e-74
Identity = 156/190 (82.11%), Postives = 163/190 (85.79%), Query Frame = 0


Query: 315 DPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQN 374
           DPEIAALLDDDDLSRFGSDVEDLEEDFVVQ NLCEEGE GS  NKFSV +DSE+ATGSQN
Sbjct: 192 DPEIAALLDDDDLSRFGSDVEDLEEDFVVQANLCEEGEAGSTVNKFSVAEDSERATGSQN 251

Query: 375 IINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDG 434
           IINNKS GD+IFEDADVDHVEDDVDKPRTR+LLDD+FDTLLS+DYAS D+G   CDEHD 
Sbjct: 252 IINNKSFGDNIFEDADVDHVEDDVDKPRTRRLLDDQFDTLLSRDYASGDDGGIDCDEHDD 311

Query: 435 WVAEEDESLAQKLKHALDDHSKDDLDLDQGYKA----------SADQELLQSTSDVIHRC 494
           WVAEE ESLAQKLKHAL DHSKDDLDLDQGYKA          SADQELLQS SDVIHRC
Sbjct: 312 WVAEEHESLAQKLKHALGDHSKDDLDLDQGYKAPADILSGKEGSADQELLQSASDVIHRC 371

[Close]

BLAST of CmoCh13G002260 vs. ExPASy TrEMBL
Match: A0A6J1GDV3 (uncharacterized protein LOC111453101 OS=Cucurbita moschata OX=3662 GN=LOC111453101 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-73
Identity = 143/172 (83.14%), Postives = 154/172 (89.53%), Query Frame = 0


Query: 101 LENELAMVTQGSLKQMTSRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKK 160
           LEN L+   +  ++QMT+ NEFSPK E VLYVKDQRRQNFHS+ SSSN NQFRS+ESSKK
Sbjct: 46  LENLLSN-QEALIEQMTTSNEFSPKLEGVLYVKDQRRQNFHSRPSSSNENQFRSDESSKK 105

Query: 161 PIKTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESEANAVHENRSSPDPIW 220
           P K CYRCGK GHF+RDC+ KVVC HCGK GHIKPNCRVKMQESEANAVHEN+SSPDPIW
Sbjct: 106 PFKACYRCGKSGHFKRDCQAKVVCDHCGKPGHIKPNCRVKMQESEANAVHENKSSPDPIW 165

Query: 221 EYCLTTEVLNQPTNVTSAVYQDDVSIGDQNSNSTTYASEFDSLQISHLDSLF 273
           EYCLTTEVL+QPTNVTSAVYQDDVS GDQNSNSTTYASEFDSLQISHLDSLF
Sbjct: 166 EYCLTTEVLDQPTNVTSAVYQDDVSTGDQNSNSTTYASEFDSLQISHLDSLF 216

[Close]

BLAST of CmoCh13G002260 vs. ExPASy TrEMBL
Match: A0A5J5BCB3 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_024753 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.5e-70
Identity = 152/317 (47.95%), Postives = 183/317 (57.73%), Query Frame = 0


Query: 1   MEKLVGNNYSYWKLCMEAYLQGQDLWDLIEGDDTEIPADTPQNAKLRQQWKIKCGKTLFT 60
           ++KLVGNNYSYWKLCMEAYLQGQDLWDLI GDD  IP DTPQNA+LR++WKIKCGK LF 
Sbjct: 9   IDKLVGNNYSYWKLCMEAYLQGQDLWDLISGDDVVIPEDTPQNAELRRKWKIKCGKALFA 68

Query: 61  LRTLISKEYIDHVRDLKSPKQVWDTLQKLFTKKNTARLQFLENELAMVTQGSL------- 120
           LRT IS+EYI HVRD KSPKQVW+TL++LFT+KNT RLQFLEN+LA +TQ +L       
Sbjct: 69  LRTSISQEYIQHVRDGKSPKQVWETLERLFTQKNTMRLQFLENQLAGMTQDNLSISEYFL 128

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 129 KIKTLCSEISELDTEEPVSDARLRRYLIRGLRKEFMPFISSIQGWANQPSIIELENLLSN 188

Query: 181 -----KQMTSRNEFSPKS-EDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPIKTCYR 240
                KQM S N+ SP   ED LY KD+ + N  SK SS +  Q ++E  S+   ++CYR
Sbjct: 189 QEALMKQMASSNKQSPSQVEDALYTKDKAKSNSFSKHSSGDNKQSKTEGQSRGNSRSCYR 248

Query: 241 CGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESEANAVHENRSSPDPIWEYCLTTE 245
           CGK GH +RDC VKVVC+ CGKSGHIK NCRV +  + AN  HE        WE CL+ E
Sbjct: 249 CGKLGHLKRDCRVKVVCNRCGKSGHIKQNCRVNL--TGANVAHETSEFEQLKWEQCLSIE 308

[Close]

BLAST of CmoCh13G002260 vs. NCBI nr
Match: XP_023542088.1 (uncharacterized protein LOC111802075 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 872.8 bits (2254), Expect = 1.6e-249
Identity = 456/521 (87.52%), Postives = 466/521 (89.44%), Query Frame = 0


Query: 101 LENELAMVTQGSLKQMTSRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKK 160
           LEN L+   +  +KQMTS NEFSPK E VLYVKDQRRQNFHS+ SSSN NQFRS+ESSKK
Sbjct: 19  LENLLSN-QEALIKQMTSSNEFSPKLEGVLYVKDQRRQNFHSRPSSSNENQFRSDESSKK 78

Query: 161 PIKTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESEANAVHENRSSPDPIW 220
           P K CYRCGKPGHF+RDC+ KVVC HCGK GHIKPNCRVKMQESEANAVHEN+SSPDPIW
Sbjct: 79  PFKACYRCGKPGHFKRDCQAKVVCDHCGKPGHIKPNCRVKMQESEANAVHENKSSPDPIW 138

Query: 221 EYCLTTEVLNQPTNVTSAVYQDDVSIGDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIA 280
           EYCLTTEVL+QPTNVTSAVYQDDVS GDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIA
Sbjct: 139 EYCLTTEVLDQPTNVTSAVYQDDVSTGDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIA 198

Query: 281 PDDPSVYSTALDLRFDENEVVELMI-------------RLLMLR---------------- 340
           PDDPSVYSTALDLRFDENEVVEL                 L+L                 
Sbjct: 199 PDDPSVYSTALDLRFDENEVVELTFDDLDGLYLPSEADDFLILENLDQTTNSQDSATDAP 258

Query: 341 PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATG 400
           PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSV KDSEKATG
Sbjct: 259 PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVAKDSEKATG 318

Query: 401 SQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDE 460
           SQNIINNKS GDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDE
Sbjct: 319 SQNIINNKSFGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDE 378

Query: 461 HDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCMEYAESA 520
           HDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCMEYAESA
Sbjct: 379 HDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCMEYAESA 438

Query: 521 QVEMNYYSFSLELNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRE 580
           QVEMNYYSFSLELNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRE
Sbjct: 439 QVEMNYYSFSLELNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRE 498

Query: 581 NVLTQDVELQEIHTNEQVVDIFTKALAKVKFEVFRRSSRSY 593
           NVLTQDVELQEIHTNEQV DIFTK LAKVKFEVFRRSSRSY
Sbjct: 499 NVLTQDVELQEIHTNEQVADIFTKVLAKVKFEVFRRSSRSY 538

[Close]

BLAST of CmoCh13G002260 vs. NCBI nr
Match: XP_023542089.1 (uncharacterized protein LOC111802075 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 868.2 bits (2242), Expect = 4.0e-248
Identity = 450/506 (88.93%), Postives = 457/506 (90.32%), Query Frame = 0


Query: 116 MTSRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPIKTCYRCGKPGHFQ 175
           MTS NEFSPK E VLYVKDQRRQNFHS+ SSSN NQFRS+ESSKKP K CYRCGKPGHF+
Sbjct: 1   MTSSNEFSPKLEGVLYVKDQRRQNFHSRPSSSNENQFRSDESSKKPFKACYRCGKPGHFK 60

Query: 176 RDCEVKVVCHHCGKSGHIKPNCRVKMQESEANAVHENRSSPDPIWEYCLTTEVLNQPTNV 235
           RDC+ KVVC HCGK GHIKPNCRVKMQESEANAVHEN+SSPDPIWEYCLTTEVL+QPTNV
Sbjct: 61  RDCQAKVVCDHCGKPGHIKPNCRVKMQESEANAVHENKSSPDPIWEYCLTTEVLDQPTNV 120

Query: 236 TSAVYQDDVSIGDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRF 295
           TSAVYQDDVS GDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRF
Sbjct: 121 TSAVYQDDVSTGDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRF 180

Query: 296 DENEVVELMI-------------RLLMLR----------------PQSDPEIAALLDDDD 355
           DENEVVEL                 L+L                 PQSDPEIAALLDDDD
Sbjct: 181 DENEVVELTFDDLDGLYLPSEADDFLILENLDQTTNSQDSATDAPPQSDPEIAALLDDDD 240

Query: 356 LSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIF 415
           LSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSV KDSEKATGSQNIINNKS GDDIF
Sbjct: 241 LSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVAKDSEKATGSQNIINNKSFGDDIF 300

Query: 416 EDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQK 475
           EDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQK
Sbjct: 301 EDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQK 360

Query: 476 LKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNR 535
           LKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNR
Sbjct: 361 LKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNR 420

Query: 536 CDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTN 593
           CDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTN
Sbjct: 421 CDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTN 480

[Close]

BLAST of CmoCh13G002260 vs. NCBI nr
Match: XP_022963858.1 (uncharacterized protein LOC111464046 [Cucurbita moschata])

HSP 1 Score: 518.8 bits (1335), Expect = 6.0e-143
Identity = 287/369 (77.78%), Postives = 289/369 (78.32%), Query Frame = 0


Query: 253 STTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVELMI------- 312
           STTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVEL         
Sbjct: 11  STTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVELTFDDLDGLY 70

Query: 313 ------RLLMLR----------------PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVV 372
                   L+L                 PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVV
Sbjct: 71  LPSEADDFLILENLDQTTNLQDSATDAPPQSDPEIAALLDDDDLSRFGSDVEDLEEDFVV 130

Query: 373 QVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRT 432
           Q                                           DADVDHVEDDVDKPRT
Sbjct: 131 Q-------------------------------------------DADVDHVEDDVDKPRT 190

Query: 433 RQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQ 492
           RQLLDDRFD LLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQ
Sbjct: 191 RQLLDDRFDILLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQ 250

Query: 493 GYKASADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSV 552
           GYKAS DQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRC+VELIKKEIIEHDVSV
Sbjct: 251 GYKASTDQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCNVELIKKEIIEHDVSV 310

Query: 553 SYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVDIFTKALAKVKFE 593
           SYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQV DIFTKALAKVKFE
Sbjct: 311 SYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVADIFTKALAKVKFE 336

[Close]

BLAST of CmoCh13G002260 vs. NCBI nr
Match: XP_023535311.1 (uncharacterized protein LOC111796785 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 373.2 bits (957), Expect = 4.0e-99
Identity = 220/371 (59.30%), Postives = 226/371 (60.92%), Query Frame = 0


Query: 356 MDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLL 415
           MDNKFSV KD EKAT SQNIINNKS GDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLL
Sbjct: 1   MDNKFSVAKDFEKATRSQNIINNKSFGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLL 60

Query: 416 SQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKA-------- 475
           SQDYASSDN DSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKA        
Sbjct: 61  SQDYASSDNSDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKAPANILSGK 120

Query: 476 --SADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLE---------------------- 535
             S DQELLQS SDVIHRCMEYAESAQVEMNYYS SLE                      
Sbjct: 121 KGSEDQELLQSASDVIHRCMEYAESAQVEMNYYSLSLELEQSKAQIQLLEGHINNLDPAV 180

Query: 536 ------------------------------------------------------------ 593
                                                                       
Sbjct: 181 KALKEVIFMKPDYVDAHCDLASALHAMREDEREIEVFQKAIDLKLGHVDALYILGGLYVN 240

[Close]

BLAST of CmoCh13G002260 vs. NCBI nr
Match: XP_022940362.1 (protein LTV1 homolog [Cucurbita moschata])

HSP 1 Score: 304.3 bits (778), Expect = 2.3e-78
Identity = 163/211 (77.25%), Postives = 179/211 (84.83%), Query Frame = 0


Query: 296 DENEVVELMIRLLMLRPQS--DPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGED 355
           DEN + ++  + + ++ Q+  DPEIAALLDDDDLSRFGSDVEDLEEDFVVQ NLCEEGED
Sbjct: 171 DENIMYKVASKTVGVKVQNAIDPEIAALLDDDDLSRFGSDVEDLEEDFVVQANLCEEGED 230

Query: 356 GSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDT 415
           GS DNKFSV +DS++ATGSQNI+NNKS GDDIFEDADVDHVEDDVDKPRTR+LLDD+FDT
Sbjct: 231 GSTDNKFSVAEDSDRATGSQNIVNNKSFGDDIFEDADVDHVEDDVDKPRTRRLLDDQFDT 290

Query: 416 LLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKA------ 475
           LLS+DYAS D+G S CDEHDGWVAEEDES AQKLKHAL DHSKDDLDLDQGYKA      
Sbjct: 291 LLSRDYASGDDGGSDCDEHDGWVAEEDESFAQKLKHALGDHSKDDLDLDQGYKAPADILS 350

Query: 476 ----SADQELLQSTSDVIHRCMEYAESAQVE 495
               SADQELLQS SDVIHRCMEYAE  Q E
Sbjct: 351 GKEGSADQELLQSASDVIHRCMEYAEKYQNE 381

[Close]

BLAST of CmoCh13G002260 vs. TAIR 10
Match: AT3G49990.1 (unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9; Bacteria - 84; Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes - 658 (source: NCBI BLink). )

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-15
Identity = 64/189 (33.86%), Postives = 101/189 (53.44%), Query Frame = 0


Query: 315 DPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDN---KFSVVKDSEKATG 374
           DPE+AALL++ D S FGSDVEDLEEDFVVQ NL ++GE   + N   +FSV ++      
Sbjct: 177 DPEVAALLENSDGSEFGSDVEDLEEDFVVQANLTQKGESSGVSNGELEFSVRRE------ 236

Query: 375 SQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDE 434
               +  + S + + E+            PR  + +D+ FD L   +Y S  +GD    E
Sbjct: 237 ----VRERESDEPVAEN------------PRVPRQIDELFDQLELNEYGSDSDGDGYIAE 296

Query: 435 HDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASA----------DQELLQSTSDVI 491
            DG   EE++ +AQ++++ +   +K D +L++ Y   A          D+E + + + VI
Sbjct: 297 -DGEEEEEEDFMAQEVQNLIHGKAK-DYELEEKYMNPADILKNSDSVRDKEEVDTAAHVI 341

[Close]

BLAST of CmoCh13G002260 vs. TAIR 10
Match: AT1G05150.1 (Calcium-binding tetratricopeptide family protein )

HSP 1 Score: 53.5 bits (127), Expect = 6.6e-07
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 504 LNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPN 540
           L +CDVE ++KE+ ++DV VSYSG G P KSIRKPN
Sbjct: 545 LGKCDVEAVRKEMRDNDVPVSYSGSGGPTKSIRKPN 580

[Close]

BLAST of CmoCh13G002260 vs. TAIR 10
Match: AT2G32450.1 (Calcium-binding tetratricopeptide family protein )

HSP 1 Score: 49.7 bits (117), Expect = 9.5e-06
Identity = 19/34 (55.88%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 506 RCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPN 540
           +CDVE +++E+ +++V VSYSG G+P KSIR+PN
Sbjct: 542 KCDVEALRREMRDNNVPVSYSGNGIPTKSIRRPN 575

[Close]

BLAST of CmoCh13G002260 vs. TAIR 10
Match: AT1G75560.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 3.1e-04
Identity = 26/83 (31.33%), Postives = 37/83 (44.58%), Query Frame = 0


Query: 118 SRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPI---KTCYRCGKPGHF 177
           SR+    +S D    +  R +   S+  S +    R E   ++       C  C +PGHF
Sbjct: 7   SRSRSRSRSRDRFRSRSPRDRRMRSERVSYHDAPSRREREPRRAFSQGNLCNNCKRPGHF 66

Query: 178 QRDCEVKVVCHHCGKSGHIKPNC 198
            RDC    VC++CG  GHI   C
Sbjct: 67  ARDCSNVSVCNNCGLPGHIAAEC 89

[Close]

BLAST of CmoCh13G002260 vs. TAIR 10
Match: AT1G75560.2 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 3.1e-04
Identity = 26/83 (31.33%), Postives = 37/83 (44.58%), Query Frame = 0


Query: 118 SRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPI---KTCYRCGKPGHF 177
           SR+    +S D    +  R +   S+  S +    R E   ++       C  C +PGHF
Sbjct: 7   SRSRSRSRSRDRFRSRSPRDRRMRSERVSYHDAPSRREREPRRAFSQGNLCNNCKRPGHF 66

Query: 178 QRDCEVKVVCHHCGKSGHIKPNC 198
            RDC    VC++CG  GHI   C
Sbjct: 67  ARDCSNVSVCNNCGLPGHIAAEC 89

The following BLAST results are available for this feature:

BLAST of CmoCh13G002260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P03370	6.9e-09	53.66	Gag-Pol polyprotein OS=Maedi visna virus (strain 1514) OX=11742 GN=pol PE=1 SV=2	[more]
P23426	6.9e-09	53.66	Gag-Pol polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS1) OX=11743...	[more]
P23427	6.9e-09	53.66	Gag-Pol polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS2) OX=11744...	[more]
P35956	6.9e-09	53.66	Gag-Pol polyprotein OS=Maedi visna virus (strain KV1772) OX=36374 GN=pol PE=1 SV...	[more]
P03352	9.0e-09	56.41	Gag polyprotein OS=Maedi visna virus (strain 1514) OX=11742 GN=gag PE=3 SV=1	[more]

BLAST of CmoCh13G002260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJ50	2.9e-143	77.78	uncharacterized protein LOC111464046 OS=Cucurbita moschata OX=3662 GN=LOC1114640...	[more]
A0A6J1FJD8	1.1e-78	77.25	protein LTV1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111445999 PE=3 SV=1	[more]
A0A6J1J360	2.8e-74	82.11	protein LTV1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480921 PE=3 SV=1	[more]
A0A6J1GDV3	1.1e-73	83.14	uncharacterized protein LOC111453101 OS=Cucurbita moschata OX=3662 GN=LOC1114531...	[more]
A0A5J5BCB3	2.5e-70	47.95	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_024753 PE=4 SV=1	[more]

BLAST of CmoCh13G002260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542088.1	1.6e-249	87.52	uncharacterized protein LOC111802075 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023542089.1	4.0e-248	88.93	uncharacterized protein LOC111802075 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022963858.1	6.0e-143	77.78	uncharacterized protein LOC111464046 [Cucurbita moschata]	[more]
XP_023535311.1	4.0e-99	59.30	uncharacterized protein LOC111796785 [Cucurbita pepo subsp. pepo]	[more]
XP_022940362.1	2.3e-78	77.25	protein LTV1 homolog [Cucurbita moschata]	[more]

BLAST of CmoCh13G002260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49990.1	1.3e-15	33.86	unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9...	[more]
AT1G05150.1	6.6e-07	63.89	Calcium-binding tetratricopeptide family protein	[more]
AT2G32450.1	9.5e-06	55.88	Calcium-binding tetratricopeptide family protein	[more]
AT1G75560.1	3.1e-04	31.33	zinc knuckle (CCHC-type) family protein	[more]
AT1G75560.2	3.1e-04	31.33	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 164..180 e-value: 1.4E-4 score: 31.2 coord: 183..199 e-value: 0.024 score: 21.2
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 163..178 e-value: 2.7E-6 score: 27.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 165..178 score: 11.119688
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 184..198 score: 9.290097
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 6..30 e-value: 1.9E-9 score: 37.0
None	No IPR available	GENE3D	4.10.60.10		coord: 139..208 e-value: 2.8E-11 score: 45.0
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 3..110
None	No IPR available	PANTHER	PTHR37610:SF42	SUBFAMILY NOT NAMED	coord: 3..110
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 157..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G002260.1	CmoCh13G002260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0042274	ribosomal small subunit biogenesis
biological_process	GO:0000056	ribosomal small subunit export from nucleus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030688	preribosome, small subunit precursor
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding