CmoCh13G002060 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G002060
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L9, chloroplastic
LocationCmo_Chr13: 1585357 .. 1588983 (-)
RNA-Seq ExpressionCmoCh13G002060
SyntenyCmoCh13G002060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCTAACAACCGCTCTCTCATGGAGATCTTCCGTGGGTCTTCCAAATTTCGGTGCAAACTTCGACGAAACCGCCAAGTTCTCTCATGGAAGAACCGCCCTGGTGGTTGTCGCCCAAAAGAAAGCCACGAAGTCGCGAAAGGTAATGGTCGAAATAGCTTTTCAAATTCCTCCCCAATGCCATGGCTGCTTTCGTTTCTCTTTCGTTCTCTCTGTTGGTTGTGAGTGGCTGTAATCGTAATTTGGTTCTGTTGTGTGTGGATTGGGGCAGATTATTCTGAAGGAGGATGTGCCGGAGCTGGGGAAGAAAGGGCAACTTATTGACGTGAAGGCTGGGTATTATAGAAACTATCTGTTTCCTATGGGGAAGGCACAGATTGTCACTCCAGTTTTGCTCAAGTAATGTGTTACATAATCCCTTTAATTTATAGATTTCTGTTCTTGAAGTCATACTAGTGCAAATGAATTTACTGAGTTTCAAAAGGGATTTTCGAACTGTTCTGTAATTTCAATGTTTCAACTGCTATAGGGTCGATTAAATGTTTGGTAATCAGGAGGGGTTGGTGAGTGGTTGTTGATTGAATGTTTTGAACTAAATTTGTGTAGCTGCTGAATGGTGCGAGTCTAGTAGCTTCATTGTTGTCAATGGAGTGTGTAACTAAATTATAACTATCGAGGACGAAGTATCAAATGGTCCTTATCTAGCATACACCTTTTGAAAACCTTAAGGGAAGCCCGAAAGAGAAGGCTGAAAGAGGACAACTCTACGAAACTATATGCTGCACAAACTCTACGAAACCCTTGCCTTACCCTCTAAGCTCCAACCTGAGAGGGCTTCAAGCTCATCCAATATCCATCCACTCTCCACAAAGAAAAATAATAATGAAGAGAATGTAACAACCCAAGCTCATCGCTAGCAGATATTATCCTCTTTGGGCTTCCCCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAAGTTTGATTTCCACACCCTTAATCTCACAGAGAATGTGATCTTGAGTATCATTCACCCTATAACAAAAGCAGTTGGTCGAGCAGGGCAACGTTTAGGGATTTTCCTTTGAAGCTTAGCTTGAGTATCCATGAATTAGGAGACTAAATCTCTAAACCCTTTTCTAATTACAGAAAGCTACTTACCTCATTTTGCAGTAAACTTCTATATGATAGAGACCCACAAAAAACAGTTCAACCTTTTTAGGATATTTGAACTTCCAAATCAGATCTTCCAAGGTAACCCTCAAGAAGGTAGATCTACTTGTAAGGCTGGTAAAGATAGATTTAGTGGTAAAATTGCCCAATGGCTCTAGGCAGGGACCATACGGCCTTGTCGTTTTCACAGTCGTACTATACTGCTTGAGCTTCGAACGGATGGTATGAAATGAAAATTCTTTTGAAGATCATCTTTGCTACATATCAGATAGCTGATATGCTTATGGAGACCCCAGGATCCATTGTCTTATTCATTGTCTTATTTTTGCCTGAAACTAATTATGGATTAGTAATGTTGTTTAATGCACATTCATTGAATTTGATGGGATTGGTCTTTATTTCTCTCAGGGAAATGCGGATTGAAGAGGAACGAATCGAAGCTGAGAAAAAACGAGTAAACAAATCCGTTCCTTTTGTTTCTTGATCGGACATTTCGAGATAGTTTTTGTTATTAGAATCAACGAGGATTAAAAGAACGAGACACTTCCTCTATAACAATTTTTGGAACGACCAATAAAGTGCTTTCTATGAACATGTTTTACTACTATCTTTACTACTATCCATACATTCCAAACGAGCGCGTGCTCGATGCTCATGCTTATTTATTGAAAATTTGACTGGCCATTGGATTCATTCTATACCCATATGCTATAAGGAACAAGAGATATTGTGTTTTCTTGACTGTTTCTACCTTTTCTATGGGGATTTATTCAAATGGTAATGAACTTGTCAGGTAATGGAGGAGGCTCAGCAACTCGCTCTGATTTTCGAAACTGTTGGAGCTTTCAAGGTGAAGCGAAAAGGTGGAAAAGGAAAACAGATATTCGGAACGTGAGTCGGGTTTTAGCTGTATTATGAGGCGGTTTTTCTTTTTATTATGCCTACTCAAATGCACTTGTTTTTGCAGAGTCACGGCACAGGATCTTGTTGATATCATCAAGGCACAACTTCAAAGGTACTTTATCTATTTAACCTCTATTTACTTTTATTCATCGGAAATGTAATAGCCTAAGCCCACCACTAGTAGATATTGTTCTCTTTGAGATTTTCCTTTCGGGTTTTTTAAAACGTGTATGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCTCCAATCGCCCACCTCTTTCGAGGTCTAGCGTCCTCACTGACACTCGTTCCCTTCTCCAATCGATGCGGGACCCCCCCTATCTACCTCCTTCGGGGGACTACCGTCCTTGTTAGCACACCGCCTCATGTCCACCCTCCTTCAGGGCCCAACCTCCTCGCTGGCACATCGTCCGGTGTTTGACTCTGATATCATTTGTCACAACCCAACCCCACCGCTAGCAGATATTGTCCTCTTTCGGCTTTTCCTTTCGGGATTCCCCTCAAGGTTTTTAAAACGCGTCTATTAGGGAGAGGTTTCCACTGTTATAAAGAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAGTTTGACCATGGACTTCCTAACCATCCAAAGAGGGGTGGAAACCCGAGGATGGTGAGACGGAGGCCACGAAATGCAACCTCACAGCCAAAAGATTATGCAAGCGAAGAAACATATGGCAAAGGGGCTTGTTGCCCACCAACAATCCTTTCAAAATAAGTATCCAAGCCATCCCCAACAGAACATTTCACAAACTAAGCAAAGAAGAGGAAATTAATCTATCTATCAAATGCACTTTTCATTTCTAAGATGGCTGGACCGTGACAATTGCTGAAATAGCTGAGGCGTTTCGTGGTAGTCACATTCGAGACACCATAGAATCAAAGCTCGATCTTTTCAAACTAAAAGTTTTGAGAATATATCCACACCGTATCTCGAACTCCTCAACTAATTCATGAAGTTTTCCCTCTGATTTAAGTATTGAATTATGTGCAGGGATATCGACAAGCGAATCGTTGTTCTTCCAGAGATCAGGGAAACAGGAGAATATGTTGCAGAGCTGAAGCTTCACCCTGAAGTTACTGCACGAGTTAGAGTGAATGTATTTGCCAACTGAAATTATTTCCAGATTTTACAAGTTCATGTAGCAGCCACAATTTTTTGAAGGGTAAATGATCATATCGTTTTGCAGTTCATCATTTCAATCATATTCTCATAAACTGTTCAATTATGGTGGTCTTTTTAAGAGGACATTTGAGATTTCGGGTGGTTTCCCATCTAATATAACGGCCTATGTCTAGAATTCACCAACTGATGGCTTCGAAATCTTCTTACGTCTCTTTTGATGCAGTCACGCTATCTATTTCTTTTGTATTTCTTCTAAGATGAAAGACTATTCTTACAAATTAACTCACGTTCTTTTAGCATGAATTTTGAAGTTTTCATTCATATGATTCACACTTTATTAGGGATAACAATC

mRNA sequence

ATGGCTTCTCTAACAACCGCTCTCTCATGGAGATCTTCCGTGGGTCTTCCAAATTTCGGTGCAAACTTCGACGAAACCGCCAAGTTCTCTCATGGAAGAACCGCCCTGGTGGTTGTCGCCCAAAAGAAAGCCACGAAGTCGCGAAAGATTATTCTGAAGGAGGATGTGCCGGAGCTGGGGAAGAAAGGGCAACTTATTGACGTGAAGGCTGGGTATTATAGAAACTATCTGTTTCCTATGGGGAAGGCACAGATTGTCACTCCAGTTTTGCTCAAGGAAATGCGGATTGAAGAGGAACGAATCGAAGCTGAGAAAAAACGAGTAATGGAGGAGGCTCAGCAACTCGCTCTGATTTTCGAAACTGTTGGAGCTTTCAAGGTGAAGCGAAAAGGTGGAAAAGGAAAACAGATATTCGGAACAGTCACGGCACAGGATCTTGTTGATATCATCAAGGCACAACTTCAAAGGGATATCGACAAGCGAATCGTTGTTCTTCCAGAGATCAGGGAAACAGGAGAATATGTTGCAGAGCTGAAGCTTCACCCTGAAGTTACTGCACGAGTTAGAGTGAATGTATTTGCCAACTGAAATTATTTCCAGATTTTACAAGTTCATGTAGCAGCCACAATTTTTTGAAGGGTAAATGATCATATCGTTTTGCAGTTCATCATTTCAATCATATTCTCATAAACTGTTCAATTATGGTGGTCTTTTTAAGAGGACATTTGAGATTTCGGGTGGTTTCCCATCTAATATAACGGCCTATGTCTAGAATTCACCAACTGATGGCTTCGAAATCTTCTTACGTCTCTTTTGATGCAGTCACGCTATCTATTTCTTTTGTATTTCTTCTAAGATGAAAGACTATTCTTACAAATTAACTCACGTTCTTTTAGCATGAATTTTGAAGTTTTCATTCATATGATTCACACTTTATTAGGGATAACAATC

Coding sequence (CDS)

ATGGCTTCTCTAACAACCGCTCTCTCATGGAGATCTTCCGTGGGTCTTCCAAATTTCGGTGCAAACTTCGACGAAACCGCCAAGTTCTCTCATGGAAGAACCGCCCTGGTGGTTGTCGCCCAAAAGAAAGCCACGAAGTCGCGAAAGATTATTCTGAAGGAGGATGTGCCGGAGCTGGGGAAGAAAGGGCAACTTATTGACGTGAAGGCTGGGTATTATAGAAACTATCTGTTTCCTATGGGGAAGGCACAGATTGTCACTCCAGTTTTGCTCAAGGAAATGCGGATTGAAGAGGAACGAATCGAAGCTGAGAAAAAACGAGTAATGGAGGAGGCTCAGCAACTCGCTCTGATTTTCGAAACTGTTGGAGCTTTCAAGGTGAAGCGAAAAGGTGGAAAAGGAAAACAGATATTCGGAACAGTCACGGCACAGGATCTTGTTGATATCATCAAGGCACAACTTCAAAGGGATATCGACAAGCGAATCGTTGTTCTTCCAGAGATCAGGGAAACAGGAGAATATGTTGCAGAGCTGAAGCTTCACCCTGAAGTTACTGCACGAGTTAGAGTGAATGTATTTGCCAACTGA

Protein sequence

MASLTTALSWRSSVGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPELGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKLHPEVTARVRVNVFAN
Homology
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BLAST of CmoCh13G002060 vs. ExPASy Swiss-Prot
Match: P82180 (50S ribosomal protein L9, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL9 PE=1 SV=2)

HSP 1 Score: 264.2 bits (674), Expect = 1.1e-69
Identity = 138/196 (70.41%), Postives = 163/196 (83.16%), Query Frame = 0 

Query: 1   MASLTTALSWRSSVGLPNFGANFDETAKFSHG-RTALVVVAQKKATKSRKIILKEDVPEL 60
           MAS T+ LS   S    +F     E  K     R  L +VAQKK  K RKIILKED+P+L
Sbjct: 1   MASTTSTLSLSWSNSFHSFAGAISEPQKSPENCRVMLPIVAQKKVKKIRKIILKEDIPDL 60

Query: 61  GKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIF 120
           GKKGQL+DV+AG+ RN+L P+GKA++VTP+LLKEM++E+ERIEAEKKRV EEAQQLA +F
Sbjct: 61  GKKGQLLDVRAGFLRNFLLPLGKAEVVTPLLLKEMKMEDERIEAEKKRVKEEAQQLARMF 120

Query: 121 ETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELK 180
           ETVGAFKVKRKGGKGKQIFG+VTAQDLVDIIKAQLQRD+DK++V LP+IRETGEY+AELK
Sbjct: 121 ETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQRDVDKKVVFLPDIRETGEYIAELK 180

Query: 181 LHPEVTARVRVNVFAN 196
           LHP+VTA+VRV VFAN
Sbjct: 181 LHPDVTAQVRVTVFAN 196

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BLAST of CmoCh13G002060 vs. ExPASy Swiss-Prot
Match: Q6JJ61 (50S ribosomal protein L9, chloroplastic OS=Ipomoea trifida OX=35884 GN=RPL9 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.9e-69
Identity = 145/192 (75.52%), Postives = 158/192 (82.29%), Query Frame = 0 

Query: 7   ALSWRSSVGLPNFGANFDE---TAKFSHGRTALVVVAQKKATKSRKIILKEDVPELGKKG 66
           ALSW SS  L N+  + +    TAK     +   +V QKK  K RKIILKEDV ELGKKG
Sbjct: 8   ALSWSSSSLLGNYKLSKNAPLGTAKLVERTSNFTIVCQKKTKKIRKIILKEDVQELGKKG 67

Query: 67  QLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFETVG 126
           QL++V+AGYYRNYL PMG AQIVTP LLKEM+IEEERIEAEKKRV EEAQQLALIFETVG
Sbjct: 68  QLMNVRAGYYRNYLLPMGMAQIVTPQLLKEMKIEEERIEAEKKRVKEEAQQLALIFETVG 127

Query: 127 AFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKLHPE 186
            FKVKRKGGKGKQIFG+VTAQDLVDIIKAQLQR++DKRIV LPEIRETG Y AELKLHPE
Sbjct: 128 GFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVSLPEIRETGAYTAELKLHPE 187

Query: 187 VTARVRVNVFAN 196
           VTARV+V V AN
Sbjct: 188 VTARVQVIVSAN 199

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BLAST of CmoCh13G002060 vs. ExPASy Swiss-Prot
Match: P25864 (50S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-69
Identity = 138/197 (70.05%), Postives = 168/197 (85.28%), Query Frame = 0 

Query: 1   MASLTT-ALSWRSS-VGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPE 60
           MAS T  +LSW SS     +F    +ET K S  R    VV+QKKA K RK+ILKEDV +
Sbjct: 1   MASSTALSLSWSSSPCWSHSFNGGANETLKVSERRFNFEVVSQKKAKKLRKVILKEDVTD 60

Query: 61  LGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALI 120
           LGK+GQL+DVKAG++RN+L P GKAQ++TP+LLKE+++E+ERIEAEK+RV EEAQQLA++
Sbjct: 61  LGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLAMV 120

Query: 121 FETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAEL 180
           F+TVGAFKVKRKGGKGK IFG+VTAQDLVDIIK+QLQ+DIDKR+V LPEIRETGEY+AEL
Sbjct: 121 FQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPEIRETGEYIAEL 180

Query: 181 KLHPEVTARVRVNVFAN 196
           KLHP+VTARV++NVFAN
Sbjct: 181 KLHPDVTARVKINVFAN 197

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BLAST of CmoCh13G002060 vs. ExPASy Swiss-Prot
Match: P11894 (50S ribosomal protein L9, chloroplastic OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=2)

HSP 1 Score: 260.0 bits (663), Expect = 2.2e-68
Identity = 139/196 (70.92%), Postives = 165/196 (84.18%), Query Frame = 0 

Query: 1   MASLTTALSWRSSVGLP-NFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPEL 60
           MAS T  LS  SS  L  +F AN    ++F +  +  +V AQKK  K+RKIILKED+  +
Sbjct: 1   MASST--LSSLSSTPLQHSFAANLKTCSQFPNKSSGFMVFAQKKTKKTRKIILKEDIVNV 60

Query: 61  GKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIF 120
           GKKG+L+DV+ G++RN+LFP GKAQ+VTP +LKEM+IEEERIEAEK+RV+EEAQQLAL F
Sbjct: 61  GKKGELLDVRVGFFRNFLFPSGKAQLVTPGVLKEMKIEEERIEAEKRRVLEEAQQLALFF 120

Query: 121 ETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELK 180
           ET GAFKVKRKGGKGKQIFG+VTAQDLVDIIKAQLQR++DKRIV LPEIRETGEY+AELK
Sbjct: 121 ETFGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVNLPEIRETGEYIAELK 180

Query: 181 LHPEVTARVRVNVFAN 196
           LHP+VTA+VRVNV AN
Sbjct: 181 LHPDVTAKVRVNVIAN 194

[Close]
BLAST of CmoCh13G002060 vs. ExPASy Swiss-Prot
Match: Q8L803 (50S ribosomal protein L9, chloroplastic OS=Triticum aestivum OX=4565 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 8.5e-57
Identity = 110/160 (68.75%), Postives = 140/160 (87.50%), Query Frame = 0 

Query: 35  ALVVVAQKKATKSRKIILKEDVPEL-GKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKE 94
           +LV+VAQ +  K R++ILK+D+ E+ GKKG  + V+AG+YRN+L P GKA ++TP +LKE
Sbjct: 30  SLVIVAQGRVKKYRQVILKDDIDEISGKKGDTMKVRAGFYRNFLLPKGKATLLTPDVLKE 89

Query: 95  MRIEEERIEAEKKRVMEEAQQLALIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQ 154
           M++E+ERIEAEKKRV EEAQQLA +FET+GAFKV RKGGKGKQIFG+VTAQDLVDIIK+Q
Sbjct: 90  MQLEQERIEAEKKRVKEEAQQLARVFETIGAFKVPRKGGKGKQIFGSVTAQDLVDIIKSQ 149

Query: 155 LQRDIDKRIVVLPEIRETGEYVAELKLHPEVTARVRVNVF 194
           L RD+DKR+V +PEIRE GEYVAE+KLHP+VTA+VR+ V+
Sbjct: 150 LNRDVDKRLVEVPEIREVGEYVAEIKLHPDVTAKVRLTVY 189

[Close]
BLAST of CmoCh13G002060 vs. ExPASy TrEMBL
Match: A0A6J1HK03 (50S ribosomal protein L9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464806 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.9e-99
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0 

Query: 1   MASLTTALSWRSSVGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPELG 60
           MASLTTALSWRSSVGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPELG
Sbjct: 1   MASLTTALSWRSSVGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPELG 60

Query: 61  KKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFE 120
           KKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFE
Sbjct: 61  KKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFE 120

Query: 121 TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKL 180
           TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKL
Sbjct: 121 TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKL 180

Query: 181 HPEVTARVRVNVFAN 196
           HPEVTARVRVNVFAN
Sbjct: 181 HPEVTARVRVNVFAN 195

[Close]
BLAST of CmoCh13G002060 vs. ExPASy TrEMBL
Match: A0A6J1I3V2 (50S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469420 PE=3 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.3e-97
Identity = 191/195 (97.95%), Postives = 194/195 (99.49%), Query Frame = 0 

Query: 1   MASLTTALSWRSSVGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPELG 60
           MASLTT+LSWRSSVGLPNFGANF+ETA FS+GRTALVVVAQKKATKSRKIILKEDVPELG
Sbjct: 1   MASLTTSLSWRSSVGLPNFGANFEETANFSYGRTALVVVAQKKATKSRKIILKEDVPELG 60

Query: 61  KKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFE 120
           KKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFE
Sbjct: 61  KKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFE 120

Query: 121 TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKL 180
           TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKL
Sbjct: 121 TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKL 180

Query: 181 HPEVTARVRVNVFAN 196
           HPEVTARVRVNVFAN
Sbjct: 181 HPEVTARVRVNVFAN 195

[Close]
BLAST of CmoCh13G002060 vs. ExPASy TrEMBL
Match: A0A5A7U986 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2042G00040 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 9.3e-91
Identity = 181/198 (91.41%), Postives = 189/198 (95.45%), Query Frame = 0 

Query: 1   MASLTTALSWRSS---VGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVP 60
           MAS+TTALSW SS   +GLPN   N +ETAKFS+GRTA+ VVAQKKA+KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSLVDMGLPNVAGNIEETAKFSYGRTAMAVVAQKKASKSRKIILKEDVP 60

Query: 61  ELGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLAL 120
           +LGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRV+EEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAE 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAE
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAE 180

Query: 181 LKLHPEVTARVRVNVFAN 196
           LKLHPEVTARVRVNVFAN
Sbjct: 181 LKLHPEVTARVRVNVFAN 198

[Close]
BLAST of CmoCh13G002060 vs. ExPASy TrEMBL
Match: A0A1S3CKN3 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501539 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 9.3e-91
Identity = 181/198 (91.41%), Postives = 189/198 (95.45%), Query Frame = 0 

Query: 1   MASLTTALSWRSS---VGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVP 60
           MAS+TTALSW SS   +GLPN   N +ETAKFS+GRTA+ VVAQKKA+KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSLVDMGLPNVAGNIEETAKFSYGRTAMAVVAQKKASKSRKIILKEDVP 60

Query: 61  ELGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLAL 120
           +LGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRV+EEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAE 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAE
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAE 180

Query: 181 LKLHPEVTARVRVNVFAN 196
           LKLHPEVTARVRVNVFAN
Sbjct: 181 LKLHPEVTARVRVNVFAN 198

[Close]
BLAST of CmoCh13G002060 vs. ExPASy TrEMBL
Match: A0A6J1DG22 (50S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020499 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.3e-89
Identity = 177/198 (89.39%), Postives = 189/198 (95.45%), Query Frame = 0 

Query: 1   MASLTTALSWRSSV---GLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVP 60
           MASLTTALSW SSV   GLPN G NF+ETAKFS+GR+A+VVVAQKKATKSRKIILKEDV 
Sbjct: 1   MASLTTALSWSSSVVDMGLPNIGGNFEETAKFSYGRSAMVVVAQKKATKSRKIILKEDVA 60

Query: 61  ELGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLAL 120
           +LGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMR+EEERIEAEKKRV EEAQQLA+
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRMEEERIEAEKKRVKEEAQQLAM 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAE 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRD+DKRIV LPEIRETGEY+AE
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDVDKRIVFLPEIRETGEYIAE 180

Query: 181 LKLHPEVTARVRVNVFAN 196
           LKLHPEV+ARVRVNV+AN
Sbjct: 181 LKLHPEVSARVRVNVYAN 198

[Close]
BLAST of CmoCh13G002060 vs. NCBI nr
Match: XP_022964816.1 (50S ribosomal protein L9, chloroplastic [Cucurbita moschata] >KAG6583512.1 50S ribosomal protein L9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019261.1 50S ribosomal protein L9, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 371.7 bits (953), Expect = 3.9e-99
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0 

Query: 1   MASLTTALSWRSSVGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPELG 60
           MASLTTALSWRSSVGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPELG
Sbjct: 1   MASLTTALSWRSSVGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPELG 60

Query: 61  KKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFE 120
           KKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFE
Sbjct: 61  KKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFE 120

Query: 121 TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKL 180
           TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKL
Sbjct: 121 TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKL 180

Query: 181 HPEVTARVRVNVFAN 196
           HPEVTARVRVNVFAN
Sbjct: 181 HPEVTARVRVNVFAN 195

[Close]
BLAST of CmoCh13G002060 vs. NCBI nr
Match: XP_022970443.1 (50S ribosomal protein L9, chloroplastic [Cucurbita maxima])

HSP 1 Score: 364.8 bits (935), Expect = 4.7e-97
Identity = 191/195 (97.95%), Postives = 194/195 (99.49%), Query Frame = 0 

Query: 1   MASLTTALSWRSSVGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPELG 60
           MASLTT+LSWRSSVGLPNFGANF+ETA FS+GRTALVVVAQKKATKSRKIILKEDVPELG
Sbjct: 1   MASLTTSLSWRSSVGLPNFGANFEETANFSYGRTALVVVAQKKATKSRKIILKEDVPELG 60

Query: 61  KKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFE 120
           KKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFE
Sbjct: 61  KKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFE 120

Query: 121 TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKL 180
           TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKL
Sbjct: 121 TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKL 180

Query: 181 HPEVTARVRVNVFAN 196
           HPEVTARVRVNVFAN
Sbjct: 181 HPEVTARVRVNVFAN 195

[Close]
BLAST of CmoCh13G002060 vs. NCBI nr
Match: XP_008463369.1 (PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis melo] >KAA0051904.1 50S ribosomal protein L9 [Cucumis melo var. makuwa] >TYJ99884.1 50S ribosomal protein L9 [Cucumis melo var. makuwa])

HSP 1 Score: 342.8 bits (878), Expect = 1.9e-90
Identity = 181/198 (91.41%), Postives = 189/198 (95.45%), Query Frame = 0 

Query: 1   MASLTTALSWRSS---VGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVP 60
           MAS+TTALSW SS   +GLPN   N +ETAKFS+GRTA+ VVAQKKA+KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSLVDMGLPNVAGNIEETAKFSYGRTAMAVVAQKKASKSRKIILKEDVP 60

Query: 61  ELGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLAL 120
           +LGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRV+EEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAE 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAE
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAE 180

Query: 181 LKLHPEVTARVRVNVFAN 196
           LKLHPEVTARVRVNVFAN
Sbjct: 181 LKLHPEVTARVRVNVFAN 198

[Close]
BLAST of CmoCh13G002060 vs. NCBI nr
Match: XP_038895317.1 (50S ribosomal protein L9, chloroplastic [Benincasa hispida])

HSP 1 Score: 340.9 bits (873), Expect = 7.3e-90
Identity = 179/198 (90.40%), Postives = 189/198 (95.45%), Query Frame = 0 

Query: 1   MASLTTALSWRSSV---GLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVP 60
           MAS+TTALSW SSV   GLPN G + +ETAKFS+GRTA+VVVAQKKA KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSVVDMGLPNVGGSLEETAKFSYGRTAMVVVAQKKALKSRKIILKEDVP 60

Query: 61  ELGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLAL 120
           +LGKKGQLIDVKAGY+RNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRV+EEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYFRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAE 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKR+V LPEIRETGEY+AE
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRVVFLPEIRETGEYIAE 180

Query: 181 LKLHPEVTARVRVNVFAN 196
           LKLHPEVTARVRVNVFAN
Sbjct: 181 LKLHPEVTARVRVNVFAN 198

[Close]
BLAST of CmoCh13G002060 vs. NCBI nr
Match: XP_022152873.1 (50S ribosomal protein L9, chloroplastic [Momordica charantia])

HSP 1 Score: 339.0 bits (868), Expect = 2.8e-89
Identity = 177/198 (89.39%), Postives = 189/198 (95.45%), Query Frame = 0 

Query: 1   MASLTTALSWRSSV---GLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVP 60
           MASLTTALSW SSV   GLPN G NF+ETAKFS+GR+A+VVVAQKKATKSRKIILKEDV 
Sbjct: 1   MASLTTALSWSSSVVDMGLPNIGGNFEETAKFSYGRSAMVVVAQKKATKSRKIILKEDVA 60

Query: 61  ELGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLAL 120
           +LGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMR+EEERIEAEKKRV EEAQQLA+
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRMEEERIEAEKKRVKEEAQQLAM 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAE 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRD+DKRIV LPEIRETGEY+AE
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDVDKRIVFLPEIRETGEYIAE 180

Query: 181 LKLHPEVTARVRVNVFAN 196
           LKLHPEV+ARVRVNV+AN
Sbjct: 181 LKLHPEVSARVRVNVYAN 198

[Close]
BLAST of CmoCh13G002060 vs. TAIR 10
Match: AT3G44890.1 (ribosomal protein L9 )

HSP 1 Score: 262.7 bits (670), Expect = 2.4e-70
Identity = 138/197 (70.05%), Postives = 168/197 (85.28%), Query Frame = 0 

Query: 1   MASLTT-ALSWRSS-VGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPE 60
           MAS T  +LSW SS     +F    +ET K S  R    VV+QKKA K RK+ILKEDV +
Sbjct: 1   MASSTALSLSWSSSPCWSHSFNGGANETLKVSERRFNFEVVSQKKAKKLRKVILKEDVTD 60

Query: 61  LGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALI 120
           LGK+GQL+DVKAG++RN+L P GKAQ++TP+LLKE+++E+ERIEAEK+RV EEAQQLA++
Sbjct: 61  LGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLAMV 120

Query: 121 FETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAEL 180
           F+TVGAFKVKRKGGKGK IFG+VTAQDLVDIIK+QLQ+DIDKR+V LPEIRETGEY+AEL
Sbjct: 121 FQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPEIRETGEYIAEL 180

Query: 181 KLHPEVTARVRVNVFAN 196
           KLHP+VTARV++NVFAN
Sbjct: 181 KLHPDVTARVKINVFAN 197

The following BLAST results are available for this feature:
BLAST of CmoCh13G002060 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821801.1e-6970.4150S ribosomal protein L9, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL9 PE=... [more]
Q6JJ611.9e-6975.5250S ribosomal protein L9, chloroplastic OS=Ipomoea trifida OX=35884 GN=RPL9 PE=3... [more]
P258643.3e-6970.0550S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL9 ... [more]
P118942.2e-6870.9250S ribosomal protein L9, chloroplastic OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV... [more]
Q8L8038.5e-5768.7550S ribosomal protein L9, chloroplastic OS=Triticum aestivum OX=4565 GN=RPL9 PE=... [more]
BLAST of CmoCh13G002060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HK031.9e-99100.0050S ribosomal protein L9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1I3V22.3e-9797.9550S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469... [more]
A0A5A7U9869.3e-9191.4150S ribosomal protein L9, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3CKN39.3e-9191.4150S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501539 ... [more]
A0A6J1DG221.3e-8989.3950S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
BLAST of CmoCh13G002060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022964816.13.9e-99100.0050S ribosomal protein L9, chloroplastic [Cucurbita moschata] >KAG6583512.1 50S r... [more]
XP_022970443.14.7e-9797.9550S ribosomal protein L9, chloroplastic [Cucurbita maxima][more]
XP_008463369.11.9e-9091.41PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis melo] >KAA0051904.1 ... [more]
XP_038895317.17.3e-9090.4050S ribosomal protein L9, chloroplastic [Benincasa hispida][more]
XP_022152873.12.8e-8989.3950S ribosomal protein L9, chloroplastic [Momordica charantia][more]
BLAST of CmoCh13G002060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G44890.12.4e-7070.05ribosomal protein L9 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 91..114
NoneNo IPR availablePANTHERPTHR21368:SF2350S RIBOSOMAL PROTEIN L9, CHLOROPLASTICcoord: 1..195
IPR020069Ribosomal protein L9, C-terminalPFAMPF03948Ribosomal_L9_Ccoord: 110..193
e-value: 2.7E-20
score: 72.6
IPR036935Ribosomal protein L9, N-terminal domain superfamilyGENE3D3.40.5.10coord: 49..108
e-value: 1.1E-18
score: 68.4
IPR020594Ribosomal protein L9, bacteria/chloroplastTIGRFAMTIGR00158TIGR00158coord: 49..194
e-value: 2.1E-31
score: 107.4
IPR020594Ribosomal protein L9, bacteria/chloroplastHAMAPMF_00503Ribosomal_L9coord: 48..195
score: 21.880836
IPR036791Ribosomal protein L9, C-terminal domain superfamilyGENE3D3.10.430.100coord: 109..195
e-value: 3.8E-19
score: 70.5
IPR036791Ribosomal protein L9, C-terminal domain superfamilySUPERFAMILY55653Ribosomal protein L9 C-domaincoord: 107..194
IPR020070Ribosomal protein L9, N-terminalPFAMPF01281Ribosomal_L9_Ncoord: 49..94
e-value: 2.1E-18
score: 65.6
IPR020070Ribosomal protein L9, N-terminalPROSITEPS00651RIBOSOMAL_L9coord: 60..87
IPR000244Ribosomal protein L9PANTHERPTHR2136850S RIBOSOMAL PROTEIN L9coord: 1..195
IPR009027Ribosomal protein L9/RNase H1, N-terminalSUPERFAMILY55658L9 N-domain-likecoord: 49..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G002060.1CmoCh13G002060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome