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CmoCh13G002060 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCTCTAACAACCGCTCTCTCATGGAGATCTTCCGTGGGTCTTCCAAATTTCGGTGCAAACTTCGACGAAACCGCCAAGTTCTCTCATGGAAGAACCGCCCTGGTGGTTGTCGCCCAAAAGAAAGCCACGAAGTCGCGAAAGGTAATGGTCGAAATAGCTTTTCAAATTCCTCCCCAATGCCATGGCTGCTTTCGTTTCTCTTTCGTTCTCTCTGTTGGTTGTGAGTGGCTGTAATCGTAATTTGGTTCTGTTGTGTGTGGATTGGGGCAGATTATTCTGAAGGAGGATGTGCCGGAGCTGGGGAAGAAAGGGCAACTTATTGACGTGAAGGCTGGGTATTATAGAAACTATCTGTTTCCTATGGGGAAGGCACAGATTGTCACTCCAGTTTTGCTCAAGTAATGTGTTACATAATCCCTTTAATTTATAGATTTCTGTTCTTGAAGTCATACTAGTGCAAATGAATTTACTGAGTTTCAAAAGGGATTTTCGAACTGTTCTGTAATTTCAATGTTTCAACTGCTATAGGGTCGATTAAATGTTTGGTAATCAGGAGGGGTTGGTGAGTGGTTGTTGATTGAATGTTTTGAACTAAATTTGTGTAGCTGCTGAATGGTGCGAGTCTAGTAGCTTCATTGTTGTCAATGGAGTGTGTAACTAAATTATAACTATCGAGGACGAAGTATCAAATGGTCCTTATCTAGCATACACCTTTTGAAAACCTTAAGGGAAGCCCGAAAGAGAAGGCTGAAAGAGGACAACTCTACGAAACTATATGCTGCACAAACTCTACGAAACCCTTGCCTTACCCTCTAAGCTCCAACCTGAGAGGGCTTCAAGCTCATCCAATATCCATCCACTCTCCACAAAGAAAAATAATAATGAAGAGAATGTAACAACCCAAGCTCATCGCTAGCAGATATTATCCTCTTTGGGCTTCCCCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAAGTTTGATTTCCACACCCTTAATCTCACAGAGAATGTGATCTTGAGTATCATTCACCCTATAACAAAAGCAGTTGGTCGAGCAGGGCAACGTTTAGGGATTTTCCTTTGAAGCTTAGCTTGAGTATCCATGAATTAGGAGACTAAATCTCTAAACCCTTTTCTAATTACAGAAAGCTACTTACCTCATTTTGCAGTAAACTTCTATATGATAGAGACCCACAAAAAACAGTTCAACCTTTTTAGGATATTTGAACTTCCAAATCAGATCTTCCAAGGTAACCCTCAAGAAGGTAGATCTACTTGTAAGGCTGGTAAAGATAGATTTAGTGGTAAAATTGCCCAATGGCTCTAGGCAGGGACCATACGGCCTTGTCGTTTTCACAGTCGTACTATACTGCTTGAGCTTCGAACGGATGGTATGAAATGAAAATTCTTTTGAAGATCATCTTTGCTACATATCAGATAGCTGATATGCTTATGGAGACCCCAGGATCCATTGTCTTATTCATTGTCTTATTTTTGCCTGAAACTAATTATGGATTAGTAATGTTGTTTAATGCACATTCATTGAATTTGATGGGATTGGTCTTTATTTCTCTCAGGGAAATGCGGATTGAAGAGGAACGAATCGAAGCTGAGAAAAAACGAGTAAACAAATCCGTTCCTTTTGTTTCTTGATCGGACATTTCGAGATAGTTTTTGTTATTAGAATCAACGAGGATTAAAAGAACGAGACACTTCCTCTATAACAATTTTTGGAACGACCAATAAAGTGCTTTCTATGAACATGTTTTACTACTATCTTTACTACTATCCATACATTCCAAACGAGCGCGTGCTCGATGCTCATGCTTATTTATTGAAAATTTGACTGGCCATTGGATTCATTCTATACCCATATGCTATAAGGAACAAGAGATATTGTGTTTTCTTGACTGTTTCTACCTTTTCTATGGGGATTTATTCAAATGGTAATGAACTTGTCAGGTAATGGAGGAGGCTCAGCAACTCGCTCTGATTTTCGAAACTGTTGGAGCTTTCAAGGTGAAGCGAAAAGGTGGAAAAGGAAAACAGATATTCGGAACGTGAGTCGGGTTTTAGCTGTATTATGAGGCGGTTTTTCTTTTTATTATGCCTACTCAAATGCACTTGTTTTTGCAGAGTCACGGCACAGGATCTTGTTGATATCATCAAGGCACAACTTCAAAGGTACTTTATCTATTTAACCTCTATTTACTTTTATTCATCGGAAATGTAATAGCCTAAGCCCACCACTAGTAGATATTGTTCTCTTTGAGATTTTCCTTTCGGGTTTTTTAAAACGTGTATGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCTCCAATCGCCCACCTCTTTCGAGGTCTAGCGTCCTCACTGACACTCGTTCCCTTCTCCAATCGATGCGGGACCCCCCCTATCTACCTCCTTCGGGGGACTACCGTCCTTGTTAGCACACCGCCTCATGTCCACCCTCCTTCAGGGCCCAACCTCCTCGCTGGCACATCGTCCGGTGTTTGACTCTGATATCATTTGTCACAACCCAACCCCACCGCTAGCAGATATTGTCCTCTTTCGGCTTTTCCTTTCGGGATTCCCCTCAAGGTTTTTAAAACGCGTCTATTAGGGAGAGGTTTCCACTGTTATAAAGAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAGTTTGACCATGGACTTCCTAACCATCCAAAGAGGGGTGGAAACCCGAGGATGGTGAGACGGAGGCCACGAAATGCAACCTCACAGCCAAAAGATTATGCAAGCGAAGAAACATATGGCAAAGGGGCTTGTTGCCCACCAACAATCCTTTCAAAATAAGTATCCAAGCCATCCCCAACAGAACATTTCACAAACTAAGCAAAGAAGAGGAAATTAATCTATCTATCAAATGCACTTTTCATTTCTAAGATGGCTGGACCGTGACAATTGCTGAAATAGCTGAGGCGTTTCGTGGTAGTCACATTCGAGACACCATAGAATCAAAGCTCGATCTTTTCAAACTAAAAGTTTTGAGAATATATCCACACCGTATCTCGAACTCCTCAACTAATTCATGAAGTTTTCCCTCTGATTTAAGTATTGAATTATGTGCAGGGATATCGACAAGCGAATCGTTGTTCTTCCAGAGATCAGGGAAACAGGAGAATATGTTGCAGAGCTGAAGCTTCACCCTGAAGTTACTGCACGAGTTAGAGTGAATGTATTTGCCAACTGAAATTATTTCCAGATTTTACAAGTTCATGTAGCAGCCACAATTTTTTGAAGGGTAAATGATCATATCGTTTTGCAGTTCATCATTTCAATCATATTCTCATAAACTGTTCAATTATGGTGGTCTTTTTAAGAGGACATTTGAGATTTCGGGTGGTTTCCCATCTAATATAACGGCCTATGTCTAGAATTCACCAACTGATGGCTTCGAAATCTTCTTACGTCTCTTTTGATGCAGTCACGCTATCTATTTCTTTTGTATTTCTTCTAAGATGAAAGACTATTCTTACAAATTAACTCACGTTCTTTTAGCATGAATTTTGAAGTTTTCATTCATATGATTCACACTTTATTAGGGATAACAATC ATGGCTTCTCTAACAACCGCTCTCTCATGGAGATCTTCCGTGGGTCTTCCAAATTTCGGTGCAAACTTCGACGAAACCGCCAAGTTCTCTCATGGAAGAACCGCCCTGGTGGTTGTCGCCCAAAAGAAAGCCACGAAGTCGCGAAAGATTATTCTGAAGGAGGATGTGCCGGAGCTGGGGAAGAAAGGGCAACTTATTGACGTGAAGGCTGGGTATTATAGAAACTATCTGTTTCCTATGGGGAAGGCACAGATTGTCACTCCAGTTTTGCTCAAGGAAATGCGGATTGAAGAGGAACGAATCGAAGCTGAGAAAAAACGAGTAATGGAGGAGGCTCAGCAACTCGCTCTGATTTTCGAAACTGTTGGAGCTTTCAAGGTGAAGCGAAAAGGTGGAAAAGGAAAACAGATATTCGGAACAGTCACGGCACAGGATCTTGTTGATATCATCAAGGCACAACTTCAAAGGGATATCGACAAGCGAATCGTTGTTCTTCCAGAGATCAGGGAAACAGGAGAATATGTTGCAGAGCTGAAGCTTCACCCTGAAGTTACTGCACGAGTTAGAGTGAATGTATTTGCCAACTGAAATTATTTCCAGATTTTACAAGTTCATGTAGCAGCCACAATTTTTTGAAGGGTAAATGATCATATCGTTTTGCAGTTCATCATTTCAATCATATTCTCATAAACTGTTCAATTATGGTGGTCTTTTTAAGAGGACATTTGAGATTTCGGGTGGTTTCCCATCTAATATAACGGCCTATGTCTAGAATTCACCAACTGATGGCTTCGAAATCTTCTTACGTCTCTTTTGATGCAGTCACGCTATCTATTTCTTTTGTATTTCTTCTAAGATGAAAGACTATTCTTACAAATTAACTCACGTTCTTTTAGCATGAATTTTGAAGTTTTCATTCATATGATTCACACTTTATTAGGGATAACAATC ATGGCTTCTCTAACAACCGCTCTCTCATGGAGATCTTCCGTGGGTCTTCCAAATTTCGGTGCAAACTTCGACGAAACCGCCAAGTTCTCTCATGGAAGAACCGCCCTGGTGGTTGTCGCCCAAAAGAAAGCCACGAAGTCGCGAAAGATTATTCTGAAGGAGGATGTGCCGGAGCTGGGGAAGAAAGGGCAACTTATTGACGTGAAGGCTGGGTATTATAGAAACTATCTGTTTCCTATGGGGAAGGCACAGATTGTCACTCCAGTTTTGCTCAAGGAAATGCGGATTGAAGAGGAACGAATCGAAGCTGAGAAAAAACGAGTAATGGAGGAGGCTCAGCAACTCGCTCTGATTTTCGAAACTGTTGGAGCTTTCAAGGTGAAGCGAAAAGGTGGAAAAGGAAAACAGATATTCGGAACAGTCACGGCACAGGATCTTGTTGATATCATCAAGGCACAACTTCAAAGGGATATCGACAAGCGAATCGTTGTTCTTCCAGAGATCAGGGAAACAGGAGAATATGTTGCAGAGCTGAAGCTTCACCCTGAAGTTACTGCACGAGTTAGAGTGAATGTATTTGCCAACTGA MASLTTALSWRSSVGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVPELGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLALIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETGEYVAELKLHPEVTARVRVNVFAN Homology
BLAST of CmoCh13G002060 vs. ExPASy Swiss-Prot
Match: P82180 (50S ribosomal protein L9, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL9 PE=1 SV=2) HSP 1 Score: 264.2 bits (674), Expect = 1.1e-69 Identity = 138/196 (70.41%), Postives = 163/196 (83.16%), Query Frame = 0
BLAST of CmoCh13G002060 vs. ExPASy Swiss-Prot
Match: Q6JJ61 (50S ribosomal protein L9, chloroplastic OS=Ipomoea trifida OX=35884 GN=RPL9 PE=3 SV=1) HSP 1 Score: 263.5 bits (672), Expect = 1.9e-69 Identity = 145/192 (75.52%), Postives = 158/192 (82.29%), Query Frame = 0
BLAST of CmoCh13G002060 vs. ExPASy Swiss-Prot
Match: P25864 (50S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL9 PE=2 SV=1) HSP 1 Score: 262.7 bits (670), Expect = 3.3e-69 Identity = 138/197 (70.05%), Postives = 168/197 (85.28%), Query Frame = 0
BLAST of CmoCh13G002060 vs. ExPASy Swiss-Prot
Match: P11894 (50S ribosomal protein L9, chloroplastic OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=2) HSP 1 Score: 260.0 bits (663), Expect = 2.2e-68 Identity = 139/196 (70.92%), Postives = 165/196 (84.18%), Query Frame = 0
BLAST of CmoCh13G002060 vs. ExPASy Swiss-Prot
Match: Q8L803 (50S ribosomal protein L9, chloroplastic OS=Triticum aestivum OX=4565 GN=RPL9 PE=2 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 8.5e-57 Identity = 110/160 (68.75%), Postives = 140/160 (87.50%), Query Frame = 0
BLAST of CmoCh13G002060 vs. ExPASy TrEMBL
Match: A0A6J1HK03 (50S ribosomal protein L9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464806 PE=3 SV=1) HSP 1 Score: 371.7 bits (953), Expect = 1.9e-99 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
BLAST of CmoCh13G002060 vs. ExPASy TrEMBL
Match: A0A6J1I3V2 (50S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469420 PE=3 SV=1) HSP 1 Score: 364.8 bits (935), Expect = 2.3e-97 Identity = 191/195 (97.95%), Postives = 194/195 (99.49%), Query Frame = 0
BLAST of CmoCh13G002060 vs. ExPASy TrEMBL
Match: A0A5A7U986 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2042G00040 PE=3 SV=1) HSP 1 Score: 342.8 bits (878), Expect = 9.3e-91 Identity = 181/198 (91.41%), Postives = 189/198 (95.45%), Query Frame = 0
BLAST of CmoCh13G002060 vs. ExPASy TrEMBL
Match: A0A1S3CKN3 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501539 PE=3 SV=1) HSP 1 Score: 342.8 bits (878), Expect = 9.3e-91 Identity = 181/198 (91.41%), Postives = 189/198 (95.45%), Query Frame = 0
BLAST of CmoCh13G002060 vs. ExPASy TrEMBL
Match: A0A6J1DG22 (50S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020499 PE=3 SV=1) HSP 1 Score: 339.0 bits (868), Expect = 1.3e-89 Identity = 177/198 (89.39%), Postives = 189/198 (95.45%), Query Frame = 0
BLAST of CmoCh13G002060 vs. NCBI nr
Match: XP_022964816.1 (50S ribosomal protein L9, chloroplastic [Cucurbita moschata] >KAG6583512.1 50S ribosomal protein L9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019261.1 50S ribosomal protein L9, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 371.7 bits (953), Expect = 3.9e-99 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
BLAST of CmoCh13G002060 vs. NCBI nr
Match: XP_022970443.1 (50S ribosomal protein L9, chloroplastic [Cucurbita maxima]) HSP 1 Score: 364.8 bits (935), Expect = 4.7e-97 Identity = 191/195 (97.95%), Postives = 194/195 (99.49%), Query Frame = 0
BLAST of CmoCh13G002060 vs. NCBI nr
Match: XP_008463369.1 (PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis melo] >KAA0051904.1 50S ribosomal protein L9 [Cucumis melo var. makuwa] >TYJ99884.1 50S ribosomal protein L9 [Cucumis melo var. makuwa]) HSP 1 Score: 342.8 bits (878), Expect = 1.9e-90 Identity = 181/198 (91.41%), Postives = 189/198 (95.45%), Query Frame = 0
BLAST of CmoCh13G002060 vs. NCBI nr
Match: XP_038895317.1 (50S ribosomal protein L9, chloroplastic [Benincasa hispida]) HSP 1 Score: 340.9 bits (873), Expect = 7.3e-90 Identity = 179/198 (90.40%), Postives = 189/198 (95.45%), Query Frame = 0
BLAST of CmoCh13G002060 vs. NCBI nr
Match: XP_022152873.1 (50S ribosomal protein L9, chloroplastic [Momordica charantia]) HSP 1 Score: 339.0 bits (868), Expect = 2.8e-89 Identity = 177/198 (89.39%), Postives = 189/198 (95.45%), Query Frame = 0
BLAST of CmoCh13G002060 vs. TAIR 10
Match: AT3G44890.1 (ribosomal protein L9 ) HSP 1 Score: 262.7 bits (670), Expect = 2.4e-70 Identity = 138/197 (70.05%), Postives = 168/197 (85.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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