CmoCh13G001640 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G001640
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTHO complex subunit 4A-like
LocationCmo_Chr13: 1061616 .. 1064475 (-)
RNA-Seq ExpressionCmoCh13G001640
SyntenyCmoCh13G001640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTTTGAATATTCAAACCGATCTAACAAAGAAGTAATTTTAATGGGGTTTGATTATTGCGCTGGATCTTCCTCTACCTTTGTCCATTGTTGAAACCCTAGGAATTCTCTCTCCGATCCACGACCACCACTCCTCCGCTCATCAATGGCAGAGCCTCTCGATATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCTGGATCCTCGAACTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTACTGCCCAGGTGAAGGATTTGGGTTTTAACATCCCGATTTCGATGAATCTTACTACCATCGCCATCCTCTAGCTCTTGTTGTTGTTGTTGTTGTTGTTGTTCTTCTTCTTCTTCTTCTACTACTACTTCTACCAGTTTCTCGTTCTTTTCAAAACGGACTTCGGGTATTTTGTTTCTAATGTTCTGAAAAACATTGGGGGTTTAGGCGCCGGAGACGGCTTGGTCACACGACATGTTTGTAGATCATGGTTCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGTATTTCAATTTTGGATTTGAGGGCTTGAACATGATAATTTTTTTTTGTATGTATTGCTAAGAATTTATTGAAATTGTATATGCAGGAACTGTTTTCAGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGGTCAAAGGTATGTTTAAAGTGTGAAGAACACAAGAGCTTTTGTTTCTTTTTAGCAATATTCTGGCTTTGGTTTGAGTTTTTGTTCTTCGTAGGGAACAGCAGAAATTGTTTTTTCACGACAAGCAGATGCGCTTGCTGCTATAAAGAGGTACAACAATGTTCAGCTAGATGGGAAGCACATGAAGTTGGAGATTGTAGGAACTAACATCGTGACACCTGCTGTTCCTGCTTCTGCAAATGGCAATTTTGGGAATCCAAATGGATTTCGAAGAGGGTATACATTTCTCTCTTCACTTGTCCTTATTTCTGATTTTTCTATTTGCGTTTACAATTGCAATCATCTATTAACGCAGTTAATGGTATGTGTTCAGAAGTAGATATGAATTTTATTTGCTTTATAATACTTTTGTAAGCCCATGATTGAAGTAATTGTTTTTAGAGTTGTATTGGATTTTGACGTAGATTTTTCAACATTTTCTTGTTATTCTGACTTAGTTCATAGTAAAATCATATTTCATTGCTTTTTGACATGTCCGCTGAAAGTTTTGAAGGGATTAAATTGAACATAAAAATATTTAATTTCAACAACTCGTTAAGATATGTGTACTTAAAAGGAGGTATTTCTGGTTTGACACTATGGACATAGTAAATAGTAACCCATATGATGTTAATCGAAGAAAGATGGCTACACTTGTATGAGAAAATTAGGGGTTATGTATATCTAAATATCTACCTATCTATATAGATATTATGATAAGTAGCCGAACCTTCATTAAGAAAAATTGAAAGAATATTATGGCATAAAAAAGACTCACTAACGGAGGCAAAATTGTATCCATAATTTATTGTCAATTTTGTTTATGATGACAATGTGTTTCTAGGAGCAATTGCATTCAACAACTTTTATTTCTCAAATTTGCGTTTGATCGCATGTCATTAGCTGCTTCCTAATGTTTATTAATATTTTTGAACAACTGTGGGTATCTGATCAAGTTTTTCACACCTTGGCTAGTATTGTCAAAAAACCACATGAACCTACTTCATTTGGTGTTGGAATGCTGGGTGTTATTTTCATTAGGGATTTGAGTTTACAAATTGTCTATTTGACCACTACCCGAATTTCTTGTAGGTTAGCTTACAAGATTTCTATTCAAGTTCTCCAATAAACAAACAACATTAAGGGATCCGGTTCTGCCACATTTTATGCAAGAAAAAACTTAATATGGGTTCCTTCTTTTGCGCGTCAATCCTTTTAGAAAAGAGTCTAGTTAATGATAACTTGGATAGTTTAATGACCAAGATTATTGAATTGAAGATGAAAGATTCCAAGTTGCAAGAAGTTTGTGTGTCATTGTTGAGGTGTATGTTATTATGTGGAGCCTGTGGAGCCTTTGGGGAGGGAGTAATGGCAGGCTCATTAGAGGGCTTGAGTGGTCTTGGTTTTGACTCCTTATTAGGTTCAACATCTCTTTGTGGGTCCAGAATCAGCTTATGTTTTGATCATATGATTCTGAAATTTTGATATTTAAGCTTTTCCATATTGATGATGAATTATATGAAAAAGGTAAAATGTTCACCAAGCCTGCCTTATTAACATTTATCACACAGATATTTTAATTGTGCGATGTTTGATAGAAGCGGTTCTTTCTTTACCTTGGTACCCCTATGACTTCTGCCTGCCTCTGAACAGTTCTGGTAGTTATTTGTGTACATGATCATGCATTACGTTGTTCTTTTTATGCTTCAGTTGGTGCTTAAGTATTAAGCTGATAATTATGTTTTATGTATTTTAATTGAAATTGCTGACATCTAAACTTTTAATCTGATTTTGATTGCTATTATTGATTCTCTTAATCAGCATGCACTTAACAAATTTTCATTTGATTTTAACAGTGGACATGTACTGGGCCGAAATCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGACGTGGACGTGGGAGTAGCAGCAGAGGTCGTGGGGAGAAATTATCTGCCGAAGATCTAGATGCTGATTTGGAGAAGTATCATGAAGAAGCCATGCAGATCAATTAA

mRNA sequence

AATTTTTGAATATTCAAACCGATCTAACAAAGAAGTAATTTTAATGGGGTTTGATTATTGCGCTGGATCTTCCTCTACCTTTGTCCATTGTTGAAACCCTAGGAATTCTCTCTCCGATCCACGACCACCACTCCTCCGCTCATCAATGGCAGAGCCTCTCGATATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCTGGATCCTCGAACTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTACTGCCCAGGCGCCGGAGACGGCTTGGTCACACGACATGTTTGTAGATCATGGTTCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGAACTGTTTTCAGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGGTCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAAGCAGATGCGCTTGCTGCTATAAAGAGGTACAACAATGTTCAGCTAGATGGGAAGCACATGAAGTTGGAGATTGTAGGAACTAACATCGTGACACCTGCTGTTCCTGCTTCTGCAAATGGCAATTTTGGGAATCCAAATGGATTTCGAAGAGGTGGACATGTACTGGGCCGAAATCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGACGTGGACGTGGGAGTAGCAGCAGAGGTCGTGGGGAGAAATTATCTGCCGAAGATCTAGATGCTGATTTGGAGAAGTATCATGAAGAAGCCATGCAGATCAATTAA

Coding sequence (CDS)

ATGGCAGAGCCTCTCGATATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCTGGATCCTCGAACTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTACTGCCCAGGCGCCGGAGACGGCTTGGTCACACGACATGTTTGTAGATCATGGTTCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGAACTGTTTTCAGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGGTCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAAGCAGATGCGCTTGCTGCTATAAAGAGGTACAACAATGTTCAGCTAGATGGGAAGCACATGAAGTTGGAGATTGTAGGAACTAACATCGTGACACCTGCTGTTCCTGCTTCTGCAAATGGCAATTTTGGGAATCCAAATGGATTTCGAAGAGGTGGACATGTACTGGGCCGAAATCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGACGTGGACGTGGGAGTAGCAGCAGAGGTCGTGGGGAGAAATTATCTGCCGAAGATCTAGATGCTGATTTGGAGAAGTATCATGAAGAAGCCATGCAGATCAATTAA

Protein sequence

MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETAWSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQIN
Homology
[Close]
BLAST of CmoCh13G001640 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 6.2e-65
Identity = 162/290 (55.86%), Postives = 187/290 (64.48%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRAAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YS----TAQAPETAWSHDMFVDHGSA-------YPSQPARASAIETGTKLYVSNLDYGVS 120
           YS      QA +  W +D+F    S          +     S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIVTPAVPASA-------------------NGNF-GNPNGFRRG---GHVLGRNR 240
           EIVGTN+  PA+P  A                   NGNF GN NG  RG   G  +GR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]
BLAST of CmoCh13G001640 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.8e-64
Identity = 149/248 (60.08%), Postives = 183/248 (73.79%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSTAQAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +A+APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDHGSAYPSQPARASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANG 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGK MK+EIVGTN+ T A P+    
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NFGNPNG--FRRGGHVLGRNRGGGRGRGPGRGGRGRG-SSSRGRGEKLSAEDLDADLEKY 240
           N GN NG  +R G    G+ RGGGRG G GRGG GRG    +G  EK+SAEDLDADL+KY
Sbjct: 181 N-GNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGKGPAEKISAEDLDADLDKY 240

Query: 241 HEEAMQIN 243
           H   M+ N
Sbjct: 241 HSGDMETN 244

[Close]
BLAST of CmoCh13G001640 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.8e-38
Identity = 115/259 (44.40%), Postives = 149/259 (57.53%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKS-----GSSNFRGRGGASSGPGPSR-----------RFRNR- 60
           MA+ +DMSLDDIIK N+       G    RGRGG + G GP R             RNR 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP 60

Query: 61  ------GLNRAAPYSTAQAPETAWSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYG 120
                 G NR APYS  +     W HD+F D G          + +ETG KL VSNLD+G
Sbjct: 61  VMARGGGRNRPAPYSRPKQLPEKWQHDLF-DSGF------GAGAGVETGGKLLVSNLDFG 120

Query: 121 VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHM 180
           VS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R+ADAL A+K+YN V LDG+ M
Sbjct: 121 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 180

Query: 181 KLEIVGTNIVTPAVPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRG-SSSR 236
            +++V + I T   PA +     N  G  R   VLG   GGG  RG   G RGRG  + R
Sbjct: 181 NIQLVTSQIDTQRRPAQS----VNRGGMTRNRGVLGGFGGGGNRRGTRGGNRGRGRGAGR 240

[Close]
BLAST of CmoCh13G001640 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.3e-37
Identity = 121/291 (41.58%), Postives = 159/291 (54.64%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNK--KSGSSNF-----RGRGGASSGPGPSRRFRNRGLNRAAPYST 60
           M+  L+M+LD+I+K  K  +SG         RGRGG   G GP+RR     +N      T
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARR-GPLAVNARPSSFT 60

Query: 61  AQAP-----ETAWSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFS 120
              P        W   +F D   A     A AS +E GT+L+V+NLD GV+NEDI+ELFS
Sbjct: 61  INKPVRRVRSLPWQSGLFEDGLRA-----AGASGVEVGTRLHVTNLDQGVTNEDIRELFS 120

Query: 121 EVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVT 180
           E+G+++RY+I+YDK+GR  GTAE+V+ R++DA  A+K+YNNV LDG+ M+LEI+G N  +
Sbjct: 121 EIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 180

Query: 181 PA-VPASANGNFGNPNG-------FRRGGHVLGRNRGGGRGRGP---------------- 240
            A +    N N    NG        ++GG   GR RGG  GRGP                
Sbjct: 181 EAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGG 240

[Close]
BLAST of CmoCh13G001640 vs. ExPASy Swiss-Prot
Match: Q3T0I4 (THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.3e-37
Identity = 114/272 (41.91%), Postives = 150/272 (55.15%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKS----GSSNFRGRGGASSGPGPSRR-----------FRNR-- 60
           MA+ +DMSLDDIIK N+      G    RGR G+  G G   +            RNR  
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA 60

Query: 61  ---------GLNRAAPYSTAQAPETAWSHDMFVDHGSAYPSQPARASAIETGTKLYVSNL 120
                    G NR APYS  +     W HD+F D G          + +ETG KL VSNL
Sbjct: 61  IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLF-DSGF------GGGAGVETGGKLLVSNL 120

Query: 121 DYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDG 180
           D+GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R+ADAL A+K+YN V LDG
Sbjct: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180

Query: 181 KHMKLEIVGTNIVTPAVPASA-----------NGNFGNPNGFRRGGHVLGRNRGGGRGRG 236
           + M +++V + I T   PA +           +G FG   G RRG       RGG RGR 
Sbjct: 181 RPMNIQLVTSQIDTQRRPAQSVNRGGMTRNRGSGGFGGGGGTRRG------TRGGSRGR- 240

[Close]
BLAST of CmoCh13G001640 vs. ExPASy TrEMBL
Match: A0A6J1HLI4 (THO complex subunit 4B-like OS=Cucurbita moschata OX=3662 GN=LOC111464665 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 9.1e-128
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 243
           IN
Sbjct: 241 IN 242

[Close]
BLAST of CmoCh13G001640 vs. ExPASy TrEMBL
Match: A0A6J1I3N4 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111469372 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 1.4e-125
Identity = 239/242 (98.76%), Postives = 240/242 (99.17%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 37  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 96

Query: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHG+AYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 97  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 156

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNIVTPAVPASANGNFG
Sbjct: 157 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKLMKLEIVGTNIVTPAVPASANGNFG 216

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRG GSSSRGRGEKLSAEDLDADLEKYHEEAMQ
Sbjct: 217 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGHGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 276

Query: 241 IN 243
           IN
Sbjct: 277 IN 278

[Close]
BLAST of CmoCh13G001640 vs. ExPASy TrEMBL
Match: A0A1S3C5R6 (THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 5.7e-114
Identity = 221/245 (90.20%), Postives = 229/245 (93.47%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHG+AYPS P RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEI+FSR ADALAAIKRYNNVQLDGK MKLEIVGTNIVTPAVPA +N +FG
Sbjct: 121 DKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGS---SSRGRGEKLSAEDLDADLEKYHEE 240
           N NGF RGG  +GRNRGGGRGRGPGRGGRGRGS   S RGRGEKLSAEDLDADL+KYHEE
Sbjct: 181 NHNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLDKYHEE 240

Query: 241 AMQIN 243
           AMQIN
Sbjct: 241 AMQIN 245

[Close]
BLAST of CmoCh13G001640 vs. ExPASy TrEMBL
Match: A0A0A0LUQ3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.8e-113
Identity = 222/250 (88.80%), Postives = 230/250 (92.00%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHG+AYPS P RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGD+KRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNIVTPAVPA +N +FG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRG-GRGRGS-------SSRGRGEKLSAEDLDADLE 240
           NPNGF RGG  +GRNRGGGRGRGPGRG GRGRGS       S RG GEKLSAEDLDADL+
Sbjct: 181 NPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGSGRGHGEKLSAEDLDADLD 240

Query: 241 KYHEEAMQIN 243
           KYHEEAMQIN
Sbjct: 241 KYHEEAMQIN 250

[Close]
BLAST of CmoCh13G001640 vs. ExPASy TrEMBL
Match: A0A6J1G9Y5 (THO complex subunit 4A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452298 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 8.5e-110
Identity = 214/242 (88.43%), Postives = 222/242 (91.74%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           M +PLD SLDDIIKNNKKSGSSNFRGRGGASSGP PSRRF NRGLNRAAPYS A+APET 
Sbjct: 1   MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETP 60

Query: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHD+FVDHG AYPS PARAS IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLEIVG NIVTP +PAS+N NFG
Sbjct: 121 DKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           N +GF RGG  LGRNRGGGRGRGPGRGGRGRG + RG GEKLSAEDLDADLEKYHEEAMQ
Sbjct: 181 NSSGFLRGGRALGRNRGGGRGRGPGRGGRGRG-NGRGGGEKLSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 243
           IN
Sbjct: 241 IN 241

[Close]
BLAST of CmoCh13G001640 vs. NCBI nr
Match: XP_022964653.1 (THO complex subunit 4B-like [Cucurbita moschata])

HSP 1 Score: 466.1 bits (1198), Expect = 1.9e-127
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 243
           IN
Sbjct: 241 IN 242

[Close]
BLAST of CmoCh13G001640 vs. NCBI nr
Match: KAG6583468.1 (THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 464.5 bits (1194), Expect = 5.4e-127
Identity = 240/242 (99.17%), Postives = 242/242 (100.00%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHG+AYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPA+PASANGNFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 243
           IN
Sbjct: 241 IN 242

[Close]
BLAST of CmoCh13G001640 vs. NCBI nr
Match: KAG7019223.1 (THO complex subunit 4A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 463.4 bits (1191), Expect = 1.2e-126
Identity = 240/242 (99.17%), Postives = 242/242 (100.00%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHG+AYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAM+
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMK 240

Query: 241 IN 243
           IN
Sbjct: 241 IN 242

[Close]
BLAST of CmoCh13G001640 vs. NCBI nr
Match: XP_022970368.1 (THO complex subunit 4A-like [Cucurbita maxima])

HSP 1 Score: 458.8 bits (1179), Expect = 3.0e-125
Identity = 239/242 (98.76%), Postives = 240/242 (99.17%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 37  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 96

Query: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHG+AYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 97  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 156

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNIVTPAVPASANGNFG
Sbjct: 157 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKLMKLEIVGTNIVTPAVPASANGNFG 216

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRG GSSSRGRGEKLSAEDLDADLEKYHEEAMQ
Sbjct: 217 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGHGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 276

Query: 241 IN 243
           IN
Sbjct: 277 IN 278

[Close]
BLAST of CmoCh13G001640 vs. NCBI nr
Match: XP_023520096.1 (THO complex subunit 4A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457.6 bits (1176), Expect = 6.7e-125
Identity = 239/242 (98.76%), Postives = 241/242 (99.59%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHG+AYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNI+TPAVPASANGNFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAVPASANGNFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRG SSRGRGEKLSAEDLDADLEKYHEEAMQ
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRG-SSRGRGEKLSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 243
           IN
Sbjct: 241 IN 241

[Close]
BLAST of CmoCh13G001640 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 250.4 bits (638), Expect = 1.5e-66
Identity = 162/288 (56.25%), Postives = 187/288 (64.93%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRAAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YS----TAQAPETAWSHDMFVDHGSA-------YPSQPARASAIETGTKLYVSNLDYGVS 120
           YS      QA +  W +D+F    S          +     S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIVTPAVPASA-------------------NGNF-GNPNG-FRRGGHVLGRNRGG 240
           EIVGTN+  PA+P  A                   NGNF GN NG FR  G  +GR RGG
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRGG 240

[Close]
BLAST of CmoCh13G001640 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 248.8 bits (634), Expect = 4.4e-66
Identity = 162/290 (55.86%), Postives = 187/290 (64.48%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRAAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YS----TAQAPETAWSHDMFVDHGSA-------YPSQPARASAIETGTKLYVSNLDYGVS 120
           YS      QA +  W +D+F    S          +     S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIVTPAVPASA-------------------NGNF-GNPNGFRRG---GHVLGRNR 240
           EIVGTN+  PA+P  A                   NGNF GN NG  RG   G  +GR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]
BLAST of CmoCh13G001640 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 245.7 bits (626), Expect = 3.7e-65
Identity = 150/249 (60.24%), Postives = 184/249 (73.90%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSTAQAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +A+APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDHGSAYPSQPARASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANG 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGK MK+EIVGTN+ T A P+    
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NFGNPNG--FRRGGHVL-GRNRGGGRGRGPGRGGRGRG-SSSRGRGEKLSAEDLDADLEK 240
           N GN NG  + RGG    G+ RGGGRG G GRGG GRG    +G  EK+SAEDLDADL+K
Sbjct: 181 N-GNSNGAPWSRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGKGPAEKISAEDLDADLDK 240

Query: 241 YHEEAMQIN 243
           YH   M+ N
Sbjct: 241 YHSGDMETN 245

[Close]
BLAST of CmoCh13G001640 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 245.4 bits (625), Expect = 4.8e-65
Identity = 149/248 (60.08%), Postives = 183/248 (73.79%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSTAQAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +A+APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDHGSAYPSQPARASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANG 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGK MK+EIVGTN+ T A P+    
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NFGNPNG--FRRGGHVLGRNRGGGRGRGPGRGGRGRG-SSSRGRGEKLSAEDLDADLEKY 240
           N GN NG  +R G    G+ RGGGRG G GRGG GRG    +G  EK+SAEDLDADL+KY
Sbjct: 181 N-GNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGKGPAEKISAEDLDADLDKY 240

Query: 241 HEEAMQIN 243
           H   M+ N
Sbjct: 241 HSGDMETN 244

[Close]
BLAST of CmoCh13G001640 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 238.4 bits (607), Expect = 5.9e-63
Identity = 148/248 (59.68%), Postives = 181/248 (72.98%), Query Frame = 0 

Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSTAQAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +  APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--APE 60

Query: 61  TAWSHDMFVDHGSAYPSQPARASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANG 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGK MK+EIVGTN+ T A P+    
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NFGNPNG--FRRGGHVLGRNRGGGRGRGPGRGGRGRG-SSSRGRGEKLSAEDLDADLEKY 240
           N GN NG  +R G    G+ RGGGRG G GRGG GRG    +G  EK+SAEDLDADL+KY
Sbjct: 181 N-GNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGKGPAEKISAEDLDADLDKY 240

Query: 241 HEEAMQIN 243
           H   M+ N
Sbjct: 241 HSGDMETN 242

The following BLAST results are available for this feature:
BLAST of CmoCh13G001640 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L7196.2e-6555.86THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1[more]
Q8L7736.8e-6460.08THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1[more]
B5FXN83.8e-3844.40THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1[more]
Q6NQ729.3e-3741.58THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1[more]
Q3T0I49.3e-3741.91THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1[more]
BLAST of CmoCh13G001640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HLI49.1e-128100.00THO complex subunit 4B-like OS=Cucurbita moschata OX=3662 GN=LOC111464665 PE=4 S... [more]
A0A6J1I3N41.4e-12598.76THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111469372 PE=4 SV=... [more]
A0A1S3C5R65.7e-11490.20THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1[more]
A0A0A0LUQ32.8e-11388.80RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV... [more]
A0A6J1G9Y58.5e-11088.43THO complex subunit 4A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
BLAST of CmoCh13G001640 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022964653.11.9e-127100.00THO complex subunit 4B-like [Cucurbita moschata][more]
KAG6583468.15.4e-12799.17THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7019223.11.2e-12699.17THO complex subunit 4A [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022970368.13.0e-12598.76THO complex subunit 4A-like [Cucurbita maxima][more]
XP_023520096.16.7e-12598.76THO complex subunit 4A-like [Cucurbita pepo subsp. pepo][more]
BLAST of CmoCh13G001640 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02530.21.5e-6656.25RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G02530.14.4e-6655.86RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G59950.53.7e-6560.24RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G59950.14.8e-6560.08RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G59950.35.9e-6359.68RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 224..242
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..242
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 213..242
NoneNo IPR availablePANTHERPTHR19965:SF74CHROMATIN TARGET OF PRMT1 PROTEIN-RELATEDcoord: 1..241
NoneNo IPR availablePANTHERPTHR19965RNA AND EXPORT FACTOR BINDING PROTEINcoord: 1..241
NoneNo IPR availableCDDcd12680RRM_THOC4coord: 87..161
e-value: 8.4212E-43
score: 137.771
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 88..160
e-value: 4.3E-19
score: 79.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 89..157
e-value: 1.6E-15
score: 56.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 87..164
score: 16.124914
IPR025715Chromatin target of PRMT1 protein, C-terminalSMARTSM01218FoP_duplication_2coord: 170..242
e-value: 2.0E-12
score: 57.3
IPR025715Chromatin target of PRMT1 protein, C-terminalPFAMPF13865FoP_duplicationcoord: 186..235
e-value: 2.2E-6
score: 28.2
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 70..222
e-value: 1.5E-26
score: 95.1
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 51..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G001640.1CmoCh13G001640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006406 mRNA export from nucleus
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding