CmoCh13G001260 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G001260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-type E3 ubiquitin transferase
Location	Cmo_Chr13: 726064 .. 726540 (+)
RNA-Seq Expression	CmoCh13G001260
Synteny	CmoCh13G001260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCACGAGCTGATGGGTCTCATAGTATTGAGCGCCATTGCTATCATTGTGTTCTTGCCGATCTTCATGTTTCGTTGCTATCACAACCACCTCATGCAGTATCAAACTAGAGCCCTCGATGTTGAGCAAACAAACCATGCAACGCGACTCTTCGCTCGTTTTCGGGCCGAGTTTATGCAACAACAGCAGTCGATAGCAGCACCGCCTCCTCGATCGAACACGGCGGAGGAAGAAGCCGCCTCCATTGTCACGAAGGTCGCTTATAGAGACATCAAAACGACGGAGGAAGCCGATGTCGATGACTACTGTGCCATTTGCATTGAAGGGTTTGAAGAGGAAGAGATTTGTGGAGTTCTTGATCGTTGTGGTCATTGTTTCCATAAGGTTTGTATCGATCAGTGGTTGAGGATCGGGAGTCGTTGCCCTTTGTGTCGCTGTTTGATTCGTGTTGTATCGGAGAATAATAATTCGTAA

mRNA sequence

ATGTCCCACGAGCTGATGGGTCTCATAGTATTGAGCGCCATTGCTATCATTGTGTTCTTGCCGATCTTCATGTTTCGTTGCTATCACAACCACCTCATGCAGTATCAAACTAGAGCCCTCGATGTTGAGCAAACAAACCATGCAACGCGACTCTTCGCTCGTTTTCGGGCCGAGTTTATGCAACAACAGCAGTCGATAGCAGCACCGCCTCCTCGATCGAACACGGCGGAGGAAGAAGCCGCCTCCATTGTCACGAAGGTCGCTTATAGAGACATCAAAACGACGGAGGAAGCCGATGTCGATGACTACTGTGCCATTTGCATTGAAGGGTTTGAAGAGGAAGAGATTTGTGGAGTTCTTGATCGTTGTGGTCATTGTTTCCATAAGTGGTTGAGGATCGGGAGTCGTTGCCCTTTGTGTCGCTGTTTGATTCGTGTTGTATCGGAGAATAATAATTCGTAA

Coding sequence (CDS)

ATGTCCCACGAGCTGATGGGTCTCATAGTATTGAGCGCCATTGCTATCATTGTGTTCTTGCCGATCTTCATGTTTCGTTGCTATCACAACCACCTCATGCAGTATCAAACTAGAGCCCTCGATGTTGAGCAAACAAACCATGCAACGCGACTCTTCGCTCGTTTTCGGGCCGAGTTTATGCAACAACAGCAGTCGATAGCAGCACCGCCTCCTCGATCGAACACGGCGGAGGAAGAAGCCGCCTCCATTGTCACGAAGGTCGCTTATAGAGACATCAAAACGACGGAGGAAGCCGATGTCGATGACTACTGTGCCATTTGCATTGAAGGGTTTGAAGAGGAAGAGATTTGTGGAGTTCTTGATCGTTGTGGTCATTGTTTCCATAAGTGGTTGAGGATCGGGAGTCGTTGCCCTTTGTGTCGCTGTTTGATTCGTGTTGTATCGGAGAATAATAATTCGTAA

Protein sequence

MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFMQQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVLDRCGHCFHKWLRIGSRCPLCRCLIRVVSENNNS

Homology

[Close]

BLAST of CmoCh13G001260 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 97  EADVDDYCAICIEGFEEEEICGVLDRCGHCFH-----KWLRIGSRCPLCRCLIRVVSEN 151
           E + +  C IC+ GFEE E   VL  C HC+H     +WL+  S CPLCR  IRV S +
Sbjct: 100 EEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]

BLAST of CmoCh13G001260 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.0e-06
Identity = 44/151 (29.14%), Postives = 74/151 (49.01%), Query Frame = 0


Query: 3   HELMGLIVLSAIAIIVFLPIFMFRCYHNH---LMQYQTRALDVEQTNHATRLFARFRAEF 62
           + L G I+L+++ II+F+ + +  C+H++   L + Q R +    + H   L     A  
Sbjct: 22  YSLNGKIMLASV-IILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRSL-----AAA 81

Query: 63  MQQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGV 122
               QS ++  P   T  E+    V  V       T E+ +++ C++C+  FEE++   V
Sbjct: 82  RDPTQSSSSLSPLDPTVLEKIPIFVYSV------KTHESPLEE-CSVCLSEFEEDDEGRV 141

Query: 123 LDRCGHCFH-----KWLRIGSRCPLCRCLIR 146
           L +CGH FH      W R  S CPLCR  ++
Sbjct: 142 LPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQ 159

[Close]

BLAST of CmoCh13G001260 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.0e-06
Identity = 40/148 (27.03%), Postives = 66/148 (44.59%), Query Frame = 0


Query: 3   HELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFMQQ 62
           + L G I+LS++ I++F+ + M  C+H++      R        H  R+  R R+     
Sbjct: 22  YALNGKIMLSSV-IVLFVAVIMILCFHSYARWLFRR--------HNRRIRRRIRSHLRTL 81

Query: 63  QQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVLDR 122
             S     PR    ++     +    Y   K     +  + C++C+  FEEE+   +L +
Sbjct: 82  SAS-----PRDQALDQAVLDKIPIFVYSS-KNPPPPEEKEECSVCLSEFEEEDEGRLLPK 141

Query: 123 CGHCFH-----KWLRIGSRCPLCRCLIR 146
           CGH FH      W R  S CPLCR  ++
Sbjct: 142 CGHSFHVDCIDTWFRSRSTCPLCRAPVQ 154

[Close]

BLAST of CmoCh13G001260 vs. ExPASy Swiss-Prot
Match: Q9M0C3 (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.5e-05
Identity = 21/45 (46.67%), Postives = 27/45 (60.00%), Query Frame = 0


Query: 102 DYCAICIEGFEEEEICGVLDRCGHCFHK-----WLRIGSRCPLCR 142
           D C +CI+GF + + C  L RCGH FH+     WL   S CP+CR
Sbjct: 113 DDCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

[Close]

BLAST of CmoCh13G001260 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-04
Identity = 19/51 (37.25%), Postives = 29/51 (56.86%), Query Frame = 0


Query: 104 CAICIEGFEEEEICGVLDRCGHCFH-----KWLRIGSRCPLCRCLIRVVSE 150
           C++C+  FEE+E   +L +C H FH      WL     CPLCR  + +++E
Sbjct: 135 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITE 185

[Close]

BLAST of CmoCh13G001260 vs. ExPASy TrEMBL
Match: A0A6J1HJU0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.4e-79
Identity = 153/158 (96.84%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 60
           MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM
Sbjct: 1   MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 60

Query: 61  QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL 120
           QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL
Sbjct: 61  QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL 120

Query: 121 DRCGHCFHK-----WLRIGSRCPLCRCLIRVVSENNNS 154
           DRCGHCFHK     WLRIGSRCPLCRCLIRVVSENNNS
Sbjct: 121 DRCGHCFHKVCIDQWLRIGSRCPLCRCLIRVVSENNNS 158

[Close]

BLAST of CmoCh13G001260 vs. ExPASy TrEMBL
Match: A0A6J1I5C3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469386 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.8e-66
Identity = 133/158 (84.18%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 60
           MSH+LMGL+VL AIAIIVFLPIFMFRCYHN  M YQTRALDVEQTNHATRLFARFRAE M
Sbjct: 1   MSHQLMGLMVLGAIAIIVFLPIFMFRCYHNRFMLYQTRALDVEQTNHATRLFARFRAEVM 60

Query: 61  QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL 120
           +QQQSIA PPPR NTAEEEAASIVTKVAYRDIK T+EAD DD CAICIEGFEEEEICGV+
Sbjct: 61  RQQQSIAVPPPRPNTAEEEAASIVTKVAYRDIKPTKEADSDDCCAICIEGFEEEEICGVV 120

Query: 121 DRCGHCFH-----KWLRIGSRCPLCRCLIRVVSENNNS 154
           D C HCFH     KWL I SRCPLCRCL+RVVSENNNS
Sbjct: 121 DGCDHCFHKVCIDKWLGIVSRCPLCRCLVRVVSENNNS 158

[Close]

BLAST of CmoCh13G001260 vs. ExPASy TrEMBL
Match: A0A5D3BE50 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002270 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.7e-24
Identity = 73/152 (48.03%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 6   MGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATR---LFARFRAEFMQQ 65
           MG + +S + II  L IF+F  YH  L   QTR LD+EQ  H  R   L A+ +AE ++Q
Sbjct: 1   MGFLFVSVVCII--LIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQ 60

Query: 66  QQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVLDR 125
           +Q+         T  EE +S V KVAY+ +K  E       CAICIE FE+EEICGV++ 
Sbjct: 61  RQT--TTQSNDTTEGEETSSAVMKVAYK-VKDNEAGGSYCCCAICIEEFEDEEICGVVES 120

Query: 126 CGHCFH-----KWLRIGSRCPLCRCLIRVVSE 150
           CGHCFH     +WLRI SRCPLCRCL+  VS+
Sbjct: 121 CGHCFHEDCMDQWLRIESRCPLCRCLVHAVSQ 147

[Close]

BLAST of CmoCh13G001260 vs. ExPASy TrEMBL
Match: A0A5A7VMH1 (RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00560 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 72/152 (47.37%), Postives = 92/152 (60.53%), Query Frame = 0


Query: 6   MGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATR---LFARFRAEFMQQ 65
           MG + +S + II  L IF+F  YH  L   QTR LD+EQ  H  R   L A+ +AE ++Q
Sbjct: 1   MGFLFVSVVCII--LIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQ 60

Query: 66  QQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVLDR 125
           +Q+         T  EE +S V  VAY+ +K  E       CAICIE FE+EEICGV++ 
Sbjct: 61  RQT--TTQSNDTTEGEETSSAVMTVAYK-VKDNEAGGSYCCCAICIEEFEDEEICGVVES 120

Query: 126 CGHCFH-----KWLRIGSRCPLCRCLIRVVSE 150
           CGHCFH     +WLRI SRCPLCRCL+  VS+
Sbjct: 121 CGHCFHEDCMDQWLRIESRCPLCRCLVHAVSQ 147

[Close]

BLAST of CmoCh13G001260 vs. ExPASy TrEMBL
Match: A0A1S4E1K2 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC107991538 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 50  RLFARFRAEFMQQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIE 109
           +L A+ +AE ++Q+Q+         T  EE +S V KVAY+ +K  E       CAICIE
Sbjct: 2   QLLAQTQAEIIRQRQT--TTQSNDTTEGEETSSAVMKVAYK-VKDNEAGGSYCCCAICIE 61

Query: 110 GFEEEEICGVLDRCGHCFH-----KWLRIGSRCPLCRCLIRVVSE 150
            FE+EEICGV++ CGHCFH     +WLRI SRCPLCRCL+  VS+
Sbjct: 62  EFEDEEICGVVESCGHCFHEDCMDQWLRIESRCPLCRCLVHAVSQ 103

[Close]

BLAST of CmoCh13G001260 vs. NCBI nr
Match: XP_022964751.1 (RING-H2 finger protein ATL64-like [Cucurbita moschata])

HSP 1 Score: 302.8 bits (774), Expect = 1.7e-78
Identity = 153/158 (96.84%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 60
           MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM
Sbjct: 1   MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 60

Query: 61  QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL 120
           QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL
Sbjct: 61  QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL 120

Query: 121 DRCGHCFHK-----WLRIGSRCPLCRCLIRVVSENNNS 154
           DRCGHCFHK     WLRIGSRCPLCRCLIRVVSENNNS
Sbjct: 121 DRCGHCFHKVCIDQWLRIGSRCPLCRCLIRVVSENNNS 158

[Close]

BLAST of CmoCh13G001260 vs. NCBI nr
Match: KAG6583431.1 (RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281.2 bits (718), Expect = 5.4e-72
Identity = 142/158 (89.87%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 60
           MSHELMG+IVLSAIAIIVFL IFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM
Sbjct: 5   MSHELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 64

Query: 61  QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL 120
           +QQQSI APPPRSNTAEEEAASIVTKVAY+DIKTTEEAD DD CAICIEGF+EEEICGVL
Sbjct: 65  RQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEICGVL 124

Query: 121 DRCGHCFHK-----WLRIGSRCPLCRCLIRVVSENNNS 154
           DRCGHCFHK     WL I SRCPLCRCL+RVVSENNNS
Sbjct: 125 DRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 162

[Close]

BLAST of CmoCh13G001260 vs. NCBI nr
Match: KAG7019192.1 (E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 279.6 bits (714), Expect = 1.6e-71
Identity = 141/158 (89.24%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 1   MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 60
           MSHELMGLIVLSAIAI VFL IFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM
Sbjct: 159 MSHELMGLIVLSAIAITVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 218

Query: 61  QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL 120
           +QQQSI APPPRSNTAEEEAASIVTKVAY+DIKTTEEAD DD CAICIEGF+EEE+CGVL
Sbjct: 219 RQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEELCGVL 278

Query: 121 DRCGHCFHK-----WLRIGSRCPLCRCLIRVVSENNNS 154
           DRCGHCFHK     WL I SRCPLCRCL+RVVSENNNS
Sbjct: 279 DRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 316

[Close]

BLAST of CmoCh13G001260 vs. NCBI nr
Match: XP_023520574.1 (RING-H2 finger protein ATL64-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.8 bits (673), Expect = 8.9e-67
Identity = 135/158 (85.44%), Postives = 140/158 (88.61%), Query Frame = 0


Query: 1   MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 60
           MSHELMGLIVLSAIAIIVFLPIFMFRCYHN  MQ QTRALDVEQ NHATRLFARFRAE M
Sbjct: 5   MSHELMGLIVLSAIAIIVFLPIFMFRCYHNRFMQNQTRALDVEQPNHATRLFARFRAEVM 64

Query: 61  QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL 120
           ++Q SIA  PPR NTAEEEAASIVTKVAY+DIKTTEEAD DD CAICIEGFEE+EICGVL
Sbjct: 65  RRQSSIATTPPRPNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFEEDEICGVL 124

Query: 121 DRCGHCFHK-----WLRIGSRCPLCRCLIRVVSENNNS 154
           DRCGHCFHK     WL I SRCPLCRCL+RVVSENNNS
Sbjct: 125 DRCGHCFHKICIDQWLGIKSRCPLCRCLVRVVSENNNS 162

[Close]

BLAST of CmoCh13G001260 vs. NCBI nr
Match: XP_022970384.1 (RING-H2 finger protein ATL64-like [Cucurbita maxima])

HSP 1 Score: 261.2 bits (666), Expect = 5.8e-66
Identity = 133/158 (84.18%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 60
           MSH+LMGL+VL AIAIIVFLPIFMFRCYHN  M YQTRALDVEQTNHATRLFARFRAE M
Sbjct: 1   MSHQLMGLMVLGAIAIIVFLPIFMFRCYHNRFMLYQTRALDVEQTNHATRLFARFRAEVM 60

Query: 61  QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL 120
           +QQQSIA PPPR NTAEEEAASIVTKVAYRDIK T+EAD DD CAICIEGFEEEEICGV+
Sbjct: 61  RQQQSIAVPPPRPNTAEEEAASIVTKVAYRDIKPTKEADSDDCCAICIEGFEEEEICGVV 120

Query: 121 DRCGHCFH-----KWLRIGSRCPLCRCLIRVVSENNNS 154
           D C HCFH     KWL I SRCPLCRCL+RVVSENNNS
Sbjct: 121 DGCDHCFHKVCIDKWLGIVSRCPLCRCLVRVVSENNNS 158

[Close]

BLAST of CmoCh13G001260 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-08
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 97  EADVDDYCAICIEGFEEEEICGVLDRCGHCFH-----KWLRIGSRCPLCRCLIRVVSEN 151
           E + +  C IC+ GFEE E   VL  C HC+H     +WL+  S CPLCR  IRV S +
Sbjct: 100 EEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]

BLAST of CmoCh13G001260 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 5.0e-07
Identity = 40/148 (27.03%), Postives = 66/148 (44.59%), Query Frame = 0


Query: 3   HELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFMQQ 62
           + L G I+LS++ I++F+ + M  C+H++      R        H  R+  R R+     
Sbjct: 22  YALNGKIMLSSV-IVLFVAVIMILCFHSYARWLFRR--------HNRRIRRRIRSHLRTL 81

Query: 63  QQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVLDR 122
             S     PR    ++     +    Y   K     +  + C++C+  FEEE+   +L +
Sbjct: 82  SAS-----PRDQALDQAVLDKIPIFVYSS-KNPPPPEEKEECSVCLSEFEEEDEGRLLPK 141

Query: 123 CGHCFH-----KWLRIGSRCPLCRCLIR 146
           CGH FH      W R  S CPLCR  ++
Sbjct: 142 CGHSFHVDCIDTWFRSRSTCPLCRAPVQ 154

[Close]

BLAST of CmoCh13G001260 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 52.0 bits (123), Expect = 5.0e-07
Identity = 44/151 (29.14%), Postives = 74/151 (49.01%), Query Frame = 0


Query: 3   HELMGLIVLSAIAIIVFLPIFMFRCYHNH---LMQYQTRALDVEQTNHATRLFARFRAEF 62
           + L G I+L+++ II+F+ + +  C+H++   L + Q R +    + H   L     A  
Sbjct: 22  YSLNGKIMLASV-IILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRSL-----AAA 81

Query: 63  MQQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGV 122
               QS ++  P   T  E+    V  V       T E+ +++ C++C+  FEE++   V
Sbjct: 82  RDPTQSSSSLSPLDPTVLEKIPIFVYSV------KTHESPLEE-CSVCLSEFEEDDEGRV 141

Query: 123 LDRCGHCFH-----KWLRIGSRCPLCRCLIR 146
           L +CGH FH      W R  S CPLCR  ++
Sbjct: 142 LPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQ 159

[Close]

BLAST of CmoCh13G001260 vs. TAIR 10
Match: AT4G30370.1 (RING/U-box superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-06
Identity = 21/45 (46.67%), Postives = 27/45 (60.00%), Query Frame = 0


Query: 102 DYCAICIEGFEEEEICGVLDRCGHCFHK-----WLRIGSRCPLCR 142
           D C +CI+GF + + C  L RCGH FH+     WL   S CP+CR
Sbjct: 113 DDCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

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BLAST of CmoCh13G001260 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 5.5e-06
Identity = 21/46 (45.65%), Postives = 27/46 (58.70%), Query Frame = 0


Query: 104 CAICIEGFEEEEICGVLDRCGHCFH-----KWLRIGSRCPLCRCLI 145
           C++C+  FEEEE   +L +C H FH      WLR  + CPLCR  I
Sbjct: 217 CSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPI 262

The following BLAST results are available for this feature:

BLAST of CmoCh13G001260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRM0	3.7e-07	45.76	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]
Q9LZJ6	7.0e-06	29.14	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
O22255	7.0e-06	27.03	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]
Q9M0C3	3.5e-05	46.67	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]
Q9LX93	1.3e-04	37.25	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]

BLAST of CmoCh13G001260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJU0	8.4e-79	96.84	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742...	[more]
A0A6J1I5C3	2.8e-66	84.18	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469386 P...	[more]
A0A5D3BE50	7.7e-24	48.03	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7VMH1	3.8e-23	47.37	RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S4E1K2	1.6e-16	49.52	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC107991538 PE=3 ...	[more]

BLAST of CmoCh13G001260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964751.1	1.7e-78	96.84	RING-H2 finger protein ATL64-like [Cucurbita moschata]	[more]
KAG6583431.1	5.4e-72	89.87	RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7019192.1	1.6e-71	89.24	E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023520574.1	8.9e-67	85.44	RING-H2 finger protein ATL64-like [Cucurbita pepo subsp. pepo]	[more]
XP_022970384.1	5.8e-66	84.18	RING-H2 finger protein ATL64-like [Cucurbita maxima]	[more]

BLAST of CmoCh13G001260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11110.1	2.6e-08	45.76	RING/U-box superfamily protein	[more]
AT2G47560.1	5.0e-07	27.03	RING/U-box superfamily protein	[more]
AT3G62690.1	5.0e-07	29.14	AtL5	[more]
AT4G30370.1	2.5e-06	46.67	RING/U-box superfamily protein	[more]
AT4G33565.1	5.5e-06	45.65	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 103..141 e-value: 1.4E-7 score: 31.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 59..145 e-value: 5.0E-11 score: 44.1
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 13..148
None	No IPR available	PANTHER	PTHR45676:SF73	E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED	coord: 13..148
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 95..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G001260.1	CmoCh13G001260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane