CmoCh13G001110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G001110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L27-like
Location	Cmo_Chr13: 624858 .. 630919 (-)
RNA-Seq Expression	CmoCh13G001110
Synteny	CmoCh13G001110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTATCTAAGCGGATGGCATTTAGTTCATCAACTCATTAATGTAATTACAATTTGAATCTAGTTTAATCGATGAGAACAGAGTTCATACCTTCTTCTCGATGGGGTTGCGGAAAAATTTACATCAATTTCTCGAAGGATCTCAAGATCTGAATCGGGTGAAGGAGGGGAAGAAATCAAATCTCTGAAGCGGTGGAAAATCTTTTTTGTTTTTGTTTTGCTTACGAATCGCCATGTTTGTGCCAACAGACGAGCATTGCAACGCAGCGTCTCATGATGTAGAATCGGGCCTTCTGTTCCTTGGCTAAGCTGCTGTACTTTCGTCCTATGGAAGAAGAGTTCTTTTGAGAGTAACTTCGAGGGAGATCGTGGGGGCTCTTGGAATTGGAAGCTGGGAAGCTTTTCTGTGAAGAACATCGCAACAATGGCGATTTGGAGGTCGAGCCACTCCTTATGAACGACGAAGAATGGTGGTAACTACTTCCTGAACCTTCCTTCTTTGATGGATTCCATTTCTCGTCCATTTAATGTGAGGTCAGATGGGGCTGCGGGCAAGGTGTTTGTGAAAATGCCTGTGAGAGTGATAGTTGGGTTGAATTGCGAGAAAGAGATGCAGAAGAGTGGGATTCTAGCGGGGCATTATACGGTATAACTAAATAACATATGATTGAGGTTTCATGATGCTTGTGGGTGGTAGAGACTGTTCACTGACCATCTTCTACTCCCAATTAAGACATTGTGGCCTTTTTATTAGTGAGTTTTGTAGGCGAGAAGTTATCCAGTGAGGCCATTATGATGTGGCTGATAGGTTTTCACCCTTGATATTGGTTTAGAGAACAACCGATCTCACCTTGGTTGAAAAGAGAAGCGAAACATTCTTTATAAGCGTGTGGAAACTTCTCTCTAACAGACACGTTTTAAAACTTTGAGGGTGAAAGAGAAAACCTAAAGCATGTATCTGCTAATAGTGGACTTGAGTTGTTACAAATGGTATCAGAGCCAGATACTGGGCAGTGTGTCAGCGAGGACGTTGGCCTCCAATGGAGTGGATTGTGAGATCCTACATCGGTTGGAGAGAGTAACAAACCATTCATTATAAAGATGTGGAAACTTCTCCCTAATAGACACGTTTTAAAAATCGCAAGCTTGATGGCGATACGTAACAAATCAAAGCAAACAATATTTACTAACGGTGGGCTTGGACTGTTACAACCAAAAGCCGGTTTAATCGAAAAAATTAAGATGGGTGGCGGAGTTTGTGCCCATTTAGGGGATAATATTTGATATTGCAGACATGGGCAAGCGTTAAAAATGATGCTCTTTCCATCTCTCTGTAAAATTTAGTGATTTCAAGCCTTTCCACTGTGAAGATCTATCGTTTTCTTTGCATTGGACTCACCTCTTTGTGTACTGTGCTGAATGCTTCTGCTGTGGCTGCTGCTGCTCTATTTTATATATATATCTATGATCTTCTCTTTTCTATGTGTTAGAGAGAGAGAGAGACAAACAGAGGCATCCATTCAATCTGGGGAAGTGGAAGGAAATAATGGAAGGGAGACAGCTTGCTAGCTGTTTATGACGTGGAAGGTATGTGTCTCATAGTCCCACCTCAAATTCTACAAATAGATCAAATGCTTTGTTTCAAAATTCTTTTTTTTTCCCCCCTTTTAAATTGTTGGTATCTGCAGAATAAGGGCTTTAATTTGCCACTTTTTTCATTCAGAAGGGGGAAGCATGCAATTATTTGCCCATTTTTGTTCTTATTAGAAGAGAAGGGATCTATAACTCAACCTTTTCTTTCCCTCTGTCCTTTTGTTACTTGCACCATTTCCCCTCCTATTCATCCAACAAAGTTCTTTCTTTTTAGCTTCTCTAATGGCTGTGTCTTTCATTGTGTTTGAACTTCACTTTGAAGTCCAAACATCCCAAAAATGGCAAGGAATTCTACAAGAAACTCCATTTTTAAAGAAATTTAGACAAACAGGGTTTTGGTTGAGATATTATTTGATAGGTCGGACACGTTGCTGTTAGCGTTTTATCATTGAGTGTAGTTAGATAGAGTTTTGGTTGAGAAACTATTTGGTTAGTCGGACACATGGTTGTTAACGTTTTATCGTTGAGTGCTGTTAGATAGGGATTTAGTTGAGAAATTATTTGGTGAGTCAGACACATTGTTGTTGACATTTATCGTTGAGTGCTGTCACTTAGGGTTTTGATTGAGAAATTATTTGGTGAGTCGGACACATTGTTGTTAACGTTTTATCGTTGAGTGCTGTTGGATAGGGGTTTGGTTGATAAATTATTTGATGAGTCGGACACGTTGTTGTTAACGTCTTATCGTTGAGTGCTGTTAGAAATACTTCAAATTCATAATCAATAGTTCATGTTATAAAATTAAGACCGATTATTATGAGGCTGTCATATCATGATCATTGACGACAGGTTGAGTGACTATTATGAGACCGTCATATCGTGATAATTGACGATAGGTTGAGTGATTATTATGAGGCTGTCATATCGTGATCATTGATGATAGGTTGAGTGATTATTATGAGGCTGTTATATCGTGATCTCGATAGGTTAAATTTGTAATCAATAGTTCACATTATGAAATACAAACCGATTATTATGAGACCGTTATATTGTGATCTTGAGTGATTATTATGAGACCGTCATATTTTGATCATTGATGATAGGTTGAGTGATTATTATAAAACCGTCATATCGTGATCATTAATGATAGGTTGAGTGAATGTTATAAAACCGTCGTAGTGTGATCTCGATGGATTGAGTGGGTTTGAAGAATATGAGGATTAGGAGAGACATTAACTAGACTTTGATTGAATGGTCAAAGAAAAGTAGTTGATGGGTCAAAGCAATGATCACATGGTGTGTTGTGATTTTACGGTTAAAACTCAAAACACATCTCTCTGTTCTGTTCTATTCTATTCTCTTCATTCTCTATTGGGTTTGATTATTATTATTATTTTGATTGAAATTTATTACATTATTTATCATGTGAGTCTCTGAAAAGTGGTGTATTTGGGTGTCCCACATGCAATCATGTGAGGTTAATATTAGGAAGGGATAGAACATGAAGGGCTGGGATCTTATTTTTCATCAATATTTTATCTATTTGATTATGATTTCAATGCAAGCTTTTAGATTCATACACATTTTTTGCGTTGCTTTTGATCAAATTCTGTATATTTCATTACTTAGAGAGAATATATGACAATCCAGAAGGTTGAACTTGGGTCATGTTTTGGACATATCATTGTTGTAATTGATATGATAGGCTGTATGAATATGATAGCAAATGTGATTCTGAATCATGTTAGAGATATTCTAGAATTTACGTTAAGATATCCAAATTATGAATATTTTTTAGGCATCTTTTAACTGTGTGTGACGGTAACAGCCTAAGCCCACTATTAGTGGATACTATCTGCTTTGGCTCGTTACATATTGTCGTCAGTTTCACGGTTTTTAAAGCGCGTCCATTAGGGGAATGTTTCCTCATTCTTATAAAAAATATTTTGTTCTCCTCTCTAACTGATGTGAGATTTCACAATCCACCTCCTTTGGGGCCTAACATCCTTGCTGGCACACCTTCTCATGTCTGGCTTTGATTCCGTCTGTAACAGCCCAAACCCACCACTAGGAGATATTGTCCGTTTTGGCCCGTTACGTATCATCATCAACTTCATAGTTTTTAAAATACGTTTGTAGGGGAGATGTTTCTACAATGTTAGGAAAAATGTTTCGTTCCCTCTCCAATCAATAATGATCTCACAAACTAATATTAGGTGAATACTATATTTCGTTTCAAAATGAATTGGCAATGAGTGGAATAACTCATGAGTCTCTTCATCTTTCCAATGTGGAATCCTGCTTTGGGTTTACCATTCTTGAGTACATTTTGCGGAATACACGTTTGAGCTTTATGAGCTCTAATATCATATTAGATACATGAGTTATTCATCTCAAAACTAGTTGAGAATGAGAATGAAATGAGGCATGGATCGGAGCCACTACGAAGAAGTTCCAGGAGTTACGAAGGAAACCTCGAGCTCATATTGGTCATGGGTTGAGAACGGGAATTGAATTATCTGAAACCTAATTTATTGTTGTTCCTCAAAAACTCATTGGTAGAGCGGTCGGTTAATCGATTGGTCGTAGGTTTGAATCCTACTTGGGGAGATTTGATTTATGAAATGGTTCGTTTTGACCCTTAAGAGTAAAAATTGAAGGGCTTTTGAAGTAAAATTAATTATGAAAAAGTTTAACATAAGATAAACCCGAATTTATTCTCTAGCTTCGAGGATATTACCGTAACAAGCCAGAGAACTCACACATATAGGCTAAACTAGGTGGCTAAGAGATATATTTTTAACTAAGAAATTATATAACATTGTAAGTTAATAGGTTAGGGTGAATTTAATCGTAAACAATACTTTAATATTCGATCGGTCACATGTAAGATCTCACATCAGTTGGAGAGCGGAACGAAACATTGCTTACAAGAGTGTGAAAACATTTCCTTATTTTCCTAACAGACACATTTTAAAACTGTGAGGCTAACAGCAATATGTAATGGGGCAAAGCAGATAATATCTACTACCAATGAGTTTGGACGGTTATAAATGGTATCGGAGCCAGTCACCAGACAACTAGTCAAAGTAGGGCTAGACAGTCTCCATAGTAGATGCAGTACCGTCTTAGTAGCATTTTAAAACTTTAAGGAGAAGCCGGAAAGGGAAAGCTTGAGAACAATATTATATTCGCCGGTGGTGAGCTCAATATCCAGCGTTTCCCTAGAGTTTTTTATATAATAATGGGCTAAGCATAAAAAGCCCATCAGACAAGCTAATTTTGGAAGAAAAAAGCCCAAGAGCCCATTAGAACACAAAAATAAATTTTAATAAAAGACCCATCAGCCCAATTTAAAACGAAAAGAAAATCCTAACCCTAAATTTTTTCCTTCAACAGCTGCCCCACCATTGTTCGAGCTCCTTCTCTTCTCCGTCTCCGTTCCGATCATCGCCGTCGCCATCCGTCACTCTCCGATCGTTTCTCAATCATGCTCAATATCGCGACTACCTTTTGCAAGCGACTGAATGTCAAGGATCTGGTTACCAATGTTCCTGTATATAGTAGTTTTATCGGTAAGGATTGTTCATCTAGATCAACTTCTGCTTGAAATGTTACTGCGTCCGTATATTTGATGATTAAAATGTTTGTTCAATTGAGATTCAGATGGATCTGCGGGTGGATTAAGCTTGTTATTCAGACGTTGGGCTACAAAGAAGACCGCTGGATCGACTAAAAATGGACGAGACTCGAAACCTAAGAATCTTGGGGTGAAGAAATTTGGTGGTGAGGTGAGTGGATTGAAACTTGGTGTAAAGAAATTTGATTGAATTTGAAATTGTTTTGTTATGAACGTTGTTATGGAGAGTTAATCCTTGTGGATTGGATACAGAGAGTTATTCCTGGTAACATTATTGTTCGTCAACGGGGCACTCGTTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCATACTCTGTTTGCTCTGAAAGAAGGCTGTGTGAAGTTCGAAAAGCACAAGCTGAGCGGACGGAAGTGGGTGCACATTATACCGAAGGAAGGACACGTTCTTCACCCTGTTTATGCCACTACTGACATTTCTCCAGAATTGAAGACAGCAACATGATAATTGAATTCATTGATGAACATGAACATGAACATGAACATGAACATGATCATGATCATGAAAATGGTATAAATTTTCCTACCTTTTTGGTGTTTCATAGCAAATTCTGACTAAACTTGATCGCTTGGTGAACGGATGTAGGCGGTCTGTTTGAGTGCATGTTCTTAATGTTGATCGAGCAGGTCTGATTTCCTCTGCTTTCGAATGCCACTTTGGCTATTCTGATGACAGTGAAGAAATAATTTTCTTTGTAATTAACTTCTATGTTTGTGGATTAGAAAGATTATGAACATTCATCTTTGTGGTTTATTTATGGGTTCTTTTTAATCATTGATCCACCG

mRNA sequence

TGTTATCTAAGCGGATGGCATTTAGTTCATCAACTCATTAATGTAATTACAATTTGAATCTAGTTTAATCGATGAGAACAGAGTTCATACCTTCTTCTCGATGGGGTTGCGGAAAAATTTACATCAATTTCTCGAAGGATCTCAAGATCTGAATCGGGTGAAGGAGGGGAAGAAATCAAATCTCTGAAGCGGTGGAAAATCTTTTTTGTTTTTGTTTTGCTTACGAATCGCCATGTTTGTGCCAACAGACGAGCATTGCAACGCAGCGTCTCATGATGTAGAATCGGGCCTTCTGTTCCTTGGCTAAGCTGCTGTACTTTCGTCCTATGGAAGAAGAGTTCTTTTGAGAGTAACTTCGAGGGAGATCGTGGGGGCTCTTGGAATTGGAAGCTGGGAAGCTTTTCTGTGAAGAACATCGCAACAATGGCGATTTGGAGGTCGAGCCACTCCTTATGAACGACGAAGAATGGTGAGAGAGAGAGAGACAAACAGAGGCATCCATTCAATCTGGGGAAGTGGAAGGAAATAATGGAAGGGAGACAGCTTGCTAGCTGTTTATGACGTGGAAGCTGCCCCACCATTGTTCGAGCTCCTTCTCTTCTCCGTCTCCGTTCCGATCATCGCCGTCGCCATCCGTCACTCTCCGATCGTTTCTCAATCATGCTCAATATCGCGACTACCTTTTGCAAGCGACTGAATGTCAAGGATCTGGTTACCAATGTTCCTGTATATAGTAGTTTTATCGATGGATCTGCGGGTGGATTAAGCTTGTTATTCAGACGTTGGGCTACAAAGAAGACCGCTGGATCGACTAAAAATGGACGAGACTCGAAACCTAAGAATCTTGGGGTGAAGAAATTTGGTGGTGAGAGAGTTATTCCTGGTAACATTATTGTTCGTCAACGGGGCACTCGTTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCATACTCTGTTTGCTCTGAAAGAAGGCTGTGTGAAGTTCGAAAAGCACAAGCTGAGCGGACGGAAGTGGGTGCACATTATACCGAAGGAAGGACACGTTCTTCACCCTGTTTATGCCACTACTGACATTTCTCCAGAATTGAAGACAGCAACATGATAATTGAATTCATTGATGAACATGAACATGAACATGAACATGAACATGATCATGATCATGAAAATGGTATAAATTTTCCTACCTTTTTGGTGTTTCATAGCAAATTCTGACTAAACTTGATCGCTTGGTGAACGGATGTAGGCGGTCTGTTTGAGTGCATGTTCTTAATGTTGATCGAGCAGGTCTGATTTCCTCTGCTTTCGAATGCCACTTTGGCTATTCTGATGACAGTGAAGAAATAATTTTCTTTGTAATTAACTTCTATGTTTGTGGATTAGAAAGATTATGAACATTCATCTTTGTGGTTTATTTATGGGTTCTTTTTAATCATTGATCCACCG

Coding sequence (CDS)

ATGCTCAATATCGCGACTACCTTTTGCAAGCGACTGAATGTCAAGGATCTGGTTACCAATGTTCCTGTATATAGTAGTTTTATCGATGGATCTGCGGGTGGATTAAGCTTGTTATTCAGACGTTGGGCTACAAAGAAGACCGCTGGATCGACTAAAAATGGACGAGACTCGAAACCTAAGAATCTTGGGGTGAAGAAATTTGGTGGTGAGAGAGTTATTCCTGGTAACATTATTGTTCGTCAACGGGGCACTCGTTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCATACTCTGTTTGCTCTGAAAGAAGGCTGTGTGAAGTTCGAAAAGCACAAGCTGAGCGGACGGAAGTGGGTGCACATTATACCGAAGGAAGGACACGTTCTTCACCCTGTTTATGCCACTACTGACATTTCTCCAGAATTGAAGACAGCAACATGA

Protein sequence

MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIIPKEGHVLHPVYATTDISPELKTAT

Homology

[Close]

BLAST of CmoCh13G001110 vs. ExPASy Swiss-Prot
Match: A9IM57 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHIIP 126
           L EG V F++ K   R +V +IP
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

[Close]

BLAST of CmoCh13G001110 vs. ExPASy Swiss-Prot
Match: Q6G507 (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHIIP 126
           L +G V F++ K + R +V +IP
Sbjct: 62  LSKGMVSFQR-KANNRSYVSVIP 83

[Close]

BLAST of CmoCh13G001110 vs. ExPASy Swiss-Prot
Match: B4RZH4 (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.5e-25
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFA
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHII 125
           LK+G V+F+      RK+V I+
Sbjct: 62  LKDGKVQFDVKGPKNRKFVSIV 83

[Close]

BLAST of CmoCh13G001110 vs. ExPASy Swiss-Prot
Match: Q6G0T7 (50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-24
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGETVIAGNIIIRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHII 125
           L  G V F++ K + R +V ++
Sbjct: 62  LSNGVVSFQR-KANNRSYVSVV 82

[Close]

BLAST of CmoCh13G001110 vs. ExPASy Swiss-Prot
Match: Q47VL3 (50S ribosomal protein L27 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) OX=167879 GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-24
Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK AGST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH G  +GIGKDHTLFA
Sbjct: 2   AHKKAAGSTRNGRDSEAKRLGVKRFGGESVLAGNIIVRQRGTRFHAGSNMGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHII 125
           L +G V+FE      RK+V II
Sbjct: 62  LSDGKVQFEVKGPKSRKFVSII 83

[Close]

BLAST of CmoCh13G001110 vs. ExPASy TrEMBL
Match: A0A6J1HP14 (uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC111464705 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.9e-80
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 149
           VHIIPKEGHVLHPVYATTDISPELKTAT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 148

[Close]

BLAST of CmoCh13G001110 vs. ExPASy TrEMBL
Match: A0A6J1I390 (uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.6e-79
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYATTDISPELKTA 148
           VHIIPKEGHVLHPVYATTDISPELKTA
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTA 147

[Close]

BLAST of CmoCh13G001110 vs. ExPASy TrEMBL
Match: A0A5A7TXR2 (50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00530 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 135/146 (92.47%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYATTDISPELKT 147
           VH+IPK+GHVLHPVYATT  SP+LKT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKT 146

[Close]

BLAST of CmoCh13G001110 vs. ExPASy TrEMBL
Match: A0A1S4E0A6 (50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 135/146 (92.47%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYATTDISPELKT 147
           VH+IPK+GHVLHPVYATT  SP+LKT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKT 146

[Close]

BLAST of CmoCh13G001110 vs. ExPASy TrEMBL
Match: A0A6J1DS22 (uncharacterized protein LOC111023867 OS=Momordica charantia OX=3673 GN=LOC111023867 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.6e-71
Identity = 134/146 (91.78%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIAT FCKRLNVKDLVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATAFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGIGKDHTLFALKEGC+KFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKEGCIKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYATTDISPELKT 147
           VH+IPKEGHVLHPVYA+T  + ELKT
Sbjct: 121 VHVIPKEGHVLHPVYAST--ASELKT 144

[Close]

BLAST of CmoCh13G001110 vs. NCBI nr
Match: XP_022964702.1 (uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964704.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_023520403.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >XP_023520404.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >KAG7019178.1 rpmA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.1 bits (788), Expect = 4.0e-80
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 149
           VHIIPKEGHVLHPVYATTDISPELKTAT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 148

[Close]

BLAST of CmoCh13G001110 vs. NCBI nr
Match: KAG6583414.1 (hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 149
           VHIIPKEGHVLHPVYA+TDISPELKTAT
Sbjct: 121 VHIIPKEGHVLHPVYASTDISPELKTAT 148

[Close]

BLAST of CmoCh13G001110 vs. NCBI nr
Match: XP_022970580.1 (uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharacterized protein LOC111469515 [Cucurbita maxima])

HSP 1 Score: 303.9 bits (777), Expect = 7.5e-79
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYATTDISPELKTA 148
           VHIIPKEGHVLHPVYATTDISPELKTA
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTA 147

[Close]

BLAST of CmoCh13G001110 vs. NCBI nr
Match: XP_038877023.1 (50S ribosomal protein L27-like [Benincasa hispida])

HSP 1 Score: 287.7 bits (735), Expect = 5.6e-74
Identity = 136/148 (91.89%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVT VPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEGCV FEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 149
           VH+IPKEGHVLHP+YATT  SPELKT T
Sbjct: 121 VHVIPKEGHVLHPIYATTSTSPELKTTT 148

[Close]

BLAST of CmoCh13G001110 vs. NCBI nr
Match: XP_016901663.1 (PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribosomal protein L27-like [Cucumis melo var. makuwa])

HSP 1 Score: 284.6 bits (727), Expect = 4.7e-73
Identity = 135/146 (92.47%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHVLHPVYATTDISPELKT 147
           VH+IPK+GHVLHPVYATT  SP+LKT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKT 146

[Close]

BLAST of CmoCh13G001110 vs. TAIR 10
Match: AT5G15220.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 221.9 bits (564), Expect = 3.5e-58
Identity = 107/151 (70.86%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS  DGS+ GLSL+F+RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIIPKEGHVLHPVY--ATTDISPELKTAT 149
           W+H+ P  GHVLHP+Y  A    S +LKTA+
Sbjct: 124 WIHVDPTGGHVLHPIYTKAAAAQSTKLKTAS 154

[Close]

BLAST of CmoCh13G001110 vs. TAIR 10
Match: AT2G16930.2 (Ribosomal protein L27 family protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 105/151 (69.54%), Postives = 124/151 (82.12%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS  DGS+ GLSL+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIIPKEGHVLHPVY--ATTDISPELKTAT 149
           W+H+ P  GHVLHP+Y  A    S +L TA+
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of CmoCh13G001110 vs. TAIR 10
Match: AT2G16930.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 105/151 (69.54%), Postives = 124/151 (82.12%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS  DGS+ GLSL+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIIPKEGHVLHPVY--ATTDISPELKTAT 149
           W+H+ P  GHVLHP+Y  A    S +L TA+
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of CmoCh13G001110 vs. TAIR 10
Match: AT2G16930.3 (Ribosomal protein L27 family protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 105/151 (69.54%), Postives = 124/151 (82.12%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS  DGS+ GLSL+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIIPKEGHVLHPVY--ATTDISPELKTAT 149
           W+H+ P  GHVLHP+Y  A    S +L TA+
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of CmoCh13G001110 vs. TAIR 10
Match: AT5G40950.1 (ribosomal protein large subunit 27 )

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-20
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 103 LKEGCVKFEKHKLSGRKWVHIIPKE 128
           L +G VKFEK     RK + + P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

The following BLAST results are available for this feature:

BLAST of CmoCh13G001110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9IM57	1.3e-25	69.88	50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)...	[more]
Q6G507	1.7e-25	68.67	50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ...	[more]
B4RZH4	6.5e-25	68.29	50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11...	[more]
Q6G0T7	2.5e-24	65.85	50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=...	[more]
Q47VL3	3.2e-24	68.29	50S ribosomal protein L27 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-68...	[more]

BLAST of CmoCh13G001110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HP14	1.9e-80	100.00	uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC1114647...	[more]
A0A6J1I390	3.6e-79	99.32	uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515...	[more]
A0A5A7TXR2	2.3e-73	92.47	50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S4E0A6	2.3e-73	92.47	50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1	[more]
A0A6J1DS22	1.6e-71	91.78	uncharacterized protein LOC111023867 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of CmoCh13G001110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964702.1	4.0e-80	100.00	uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 unchar...	[more]
KAG6583414.1	1.2e-79	99.32	hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022970580.1	7.5e-79	99.32	uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharac...	[more]
XP_038877023.1	5.6e-74	91.89	50S ribosomal protein L27-like [Benincasa hispida]	[more]
XP_016901663.1	4.7e-73	92.47	PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribos...	[more]

BLAST of CmoCh13G001110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15220.1	3.5e-58	70.86	Ribosomal protein L27 family protein	[more]
AT2G16930.2	1.1e-56	69.54	Ribosomal protein L27 family protein	[more]
AT2G16930.1	1.1e-56	69.54	Ribosomal protein L27 family protein	[more]
AT2G16930.3	1.1e-56	69.54	Ribosomal protein L27 family protein	[more]
AT5G40950.1	1.0e-20	60.00	ribosomal protein large subunit 27	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 95..119 score: 47.08 coord: 45..69 score: 63.85 coord: 70..94 score: 57.38
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 43..122 e-value: 3.2E-37 score: 126.4
IPR001684	Ribosomal protein L27	TIGRFAM	TIGR00062	TIGR00062	coord: 43..123 e-value: 3.8E-35 score: 117.8
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 2..148
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 42..126 score: 25.85664
None	No IPR available	GENE3D	2.40.50.100		coord: 47..139 e-value: 1.5E-32 score: 113.9
None	No IPR available	PANTHER	PTHR15893:SF9	50S RIBOSOMAL PROTEIN L27-LIKE	coord: 2..148
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 43..123
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 75..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G001110.1	CmoCh13G001110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome