CmoCh13G001060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G001060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	serine/arginine repetitive matrix protein 1
Location	Cmo_Chr13: 589310 .. 592000 (-)
RNA-Seq Expression	CmoCh13G001060
Synteny	CmoCh13G001060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGAGCCCTAATTCCACGAGCTTGAACGAAGACGAAGATAAAACGGTACGAAATTCCTAATTGATGTCTCAATAAGTCGCTTGAATCATACTTCCCAGATTAATCCAGAGTTGAGTTCAGTCCAATTCGTTTGGCCTCTGACTCACCGGCTCTCTCTCGCCGTCGCTGCCACCGCCGGGGAGCGTTCGGAGCTTCTTCTCTCCCTCAGTTTCTCCCCAACCCATTGCTTACAACAACACAAACCCTGAAAAATGTCCGGCGGGTTTTTCCGGGTAAGGATCGAAATGAACTTATAACTTAGTTTTCAGCTCGTTTCTTGGTTCTTTGTTTAATCCCAAACGAATCAGCGCGTTTCTGAAGCCATGTGTTCTTGGCTGGGCGAGTGTTTAGGGGTTTGGGTCTTGATTGGACAAGTTCTTTTTAGTAGCTTTCATTATCATTGTGAAGTGAAGAACTTCCCAACTTATTGTTCTTGTTTATAAATTGTTCTTTGTCTTGTTAGATCAGAATTATCATTTCATAATTAATTTGTCTTTAATTGTGGATTTTTCCTGTATGTTCTTGGTATTTTCTTGAGATTTTTATGGACGTTTTTGACTAGGGTACGTCTACGGACCAAGACACTCGTTTTTCAAACAAGCAAGCAAAGCTGCTGAAGTCACAGAAGTTCCCTGCTGAACTAGACCAACTGGTTCGTCGTTTTCATCTTCAAATTATTATGTTGTGGTAATTGCAATTGAGTGAAATGTTAATCTGTACTGCTATGAATGTTAAACTATTTTAAGGGTTAATTAGTAATTCTTAAGCACGAGTGATGTGTCTTAGGTTGATACGACAAAGGTGAAGATGGACGTTATCAAGCCGTGGATTGCTACGAGGGCGACGGAGCTTCTTGGGTTTGAAGATGAAGTTCTTATTAACTTCATATATGGCCTTTTGGATAGCAAGGTAATAAAAAGATTTTTACTGTAGAATTGCAGGCAATTTGATTGCACAACTTTTTCGTATTCTTATTATTACTTGAGTTCGATAATTGCAATATGGGATATCAAACCATTAACCCTTAAGATGGTAATAAGTACGGAGCTATTAGATGATAAAAGTCCCACATTAGCTAATTTAGAGAATGATCATGGGTTTATAATCAAAGAATACTCTCTCTATTGATATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGATAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACATGGTATCAGAGCCATGCCCTAAACTTGGTAGTGCCAATAGATGGGTAAATCCTCAAATGTCGAACAAAGGACTCCAAAAGAAAAAAGGAGTCGAGCCTCCTCGAAGGCATAGTAAAAAATGACTAAGACTCTAAAAGAAAAAGGAGTCGAGCCTCAATTAAAGGGAGACGTACTTTGTTTGAGGGGAGGTGTTGGATGATGAAAGTCCCACATCGGCTAATTTAGGTAATGATCATGGGTTTATAATCAAAGAATAATCTCTCAATTGATATGAGGCCTTTTAAGGAAGCCCAAAGCAAAGCCATGAGAGCTTTTGTTCAAAGTGGACAATATCATATCATTGTTGATCGAATATCTCAAGGAAAGAACACTTGTTTGAGATTCGAATCATTCCACAAACTAGATTGATCATGTCGAGCTTGAATGATTCTACATGCAAACTAAAGTACATAGAATTGCAAAGAAACTTAGCCATTACAAAGATGACATACATGGCTTGATATAGCCTCAAAATAAAAACCCTTAACCTTCTTGAGGCATTCCAAGAGTGGTAACTATATTTCATGACCATAATTAGTCACCATGTATATTTTATGGCTATAATTAACTACTGTGTAAATAAACCTTAAAATACATTAAATAAATACTATAACTCAAAATGATGATCCACTCAAAATTTTTAACAATGAAACATCTTTTGGTAATTTTGACAATATTTTCTTCACATCTTCCTTGAACTTTATGTTGCATGATTGATGTCTTGGTTCATATCATGTCGTTCCTTTCTGAGGCTATTGAATGGTGGTTCGGCTCAAGACATACTACACTAGTGGCATGTGGCAGATGAATTGAGGCTGTCCCAGTTTACTAAAATGCATACTCTATAGAAATGGTTTAAGCTGTACTGTTCAATTTGCATCAATTGACTGCTTTGGTACAGGAAGTGAATGGGAAGGAAGTTCAAATACAACTCACTGGGTTCATGGAAAAGAGTACTGTGAAGTTCATGAAAGAGCTTTGGACACTACTTCTAAGTGCCCAGACGAATGCCAGTGGTGTACCTCAACAATTTTTGGATGCCAAGGAAGAAGAAATTAGGAAGAAGAAGGTTTCTTGATTTCGTTAAGTTTTATTGTATGGCTAGTAGTTACGTGGATTGCTCGGTGTCTTTCAATTGATTAGTTCTCTTTGATTATTATAGGCAGAGACAGATTTTCTTGCAAATGAAATTCAGAAAAAGAGAGAGAAGGAAAATAAAGAAATGGAGGAGCAGAGATCAAAGAATATGGTAAGTTGTTTATTTATGTTGGAGTTGTAATTGATTGGAATTGGTTTTTGGTCATAACTTTTCTCTGTATTTCCTCTGGCATTCAGCTAGCTTCTGCAATTATTTGGGTTCATGTCCTTTACCTCGAACTACTGTAG

mRNA sequence

GAAAGAGCCCTAATTCCACGAGCTTGAACGAAGACGAAGATAAAACGGTACGAAATTCCTAATTGATGTCTCAATAAGTCGCTTGAATCATACTTCCCAGATTAATCCAGAGTTGAGTTCAGTCCAATTCGTTTGGCCTCTGACTCACCGGCTCTCTCTCGCCGTCGCTGCCACCGCCGGGGAGCGTTCGGAGCTTCTTCTCTCCCTCAGTTTCTCCCCAACCCATTGCTTACAACAACACAAACCCTGAAAAATGTCCGGCGGGTTTTTCCGGGGTACGTCTACGGACCAAGACACTCGTTTTTCAAACAAGCAAGCAAAGCTGCTGAAGTCACAGAAGTTCCCTGCTGAACTAGACCAACTGGTTGATACGACAAAGGTGAAGATGGACGTTATCAAGCCGTGGATTGCTACGAGGGCGACGGAGCTTCTTGGGTTTGAAGATGAAGTTCTTATTAACTTCATATATGGCCTTTTGGATAGCAAGGAAGTGAATGGGAAGGAAGTTCAAATACAACTCACTGGGTTCATGGAAAAGAGTACTGTGAAGTTCATGAAAGAGCTTTGGACACTACTTCTAAGTGCCCAGACGAATGCCAGTGGTGTACCTCAACAATTTTTGGATGCCAAGGAAGAAGAAATTAGGAAGAAGAAGGCAGAGACAGATTTTCTTGCAAATGAAATTCAGAAAAAGAGAGAGAAGGAAAATAAAGAAATGGAGGAGCAGAGATCAAAGAATATGCTAGCTTCTGCAATTATTTGGGTTCATGTCCTTTACCTCGAACTACTGTAG

Coding sequence (CDS)

ATGTCCGGCGGGTTTTTCCGGGGTACGTCTACGGACCAAGACACTCGTTTTTCAAACAAGCAAGCAAAGCTGCTGAAGTCACAGAAGTTCCCTGCTGAACTAGACCAACTGGTTGATACGACAAAGGTGAAGATGGACGTTATCAAGCCGTGGATTGCTACGAGGGCGACGGAGCTTCTTGGGTTTGAAGATGAAGTTCTTATTAACTTCATATATGGCCTTTTGGATAGCAAGGAAGTGAATGGGAAGGAAGTTCAAATACAACTCACTGGGTTCATGGAAAAGAGTACTGTGAAGTTCATGAAAGAGCTTTGGACACTACTTCTAAGTGCCCAGACGAATGCCAGTGGTGTACCTCAACAATTTTTGGATGCCAAGGAAGAAGAAATTAGGAAGAAGAAGGCAGAGACAGATTTTCTTGCAAATGAAATTCAGAAAAAGAGAGAGAAGGAAAATAAAGAAATGGAGGAGCAGAGATCAAAGAATATGCTAGCTTCTGCAATTATTTGGGTTCATGTCCTTTACCTCGAACTACTGTAG

Protein sequence

MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELLGFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQQFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNMLASAIIWVHVLYLELL

Homology

[Close]

BLAST of CmoCh13G001060 vs. ExPASy Swiss-Prot
Match: Q5ZMJ9 (Serine/arginine repetitive matrix protein 1 OS=Gallus gallus OX=9031 GN=SRRM1 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-37
Identity = 86/168 (51.19%), Postives = 120/168 (71.43%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           M  GFFRGTS +QD RFSNKQ KLLK  KF   L++ VD +KV ++VIKPWI  R TE+L
Sbjct: 1   MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFME-KSTVKFMKELWTLLLSAQTNASGVP 120
           GFED+V+I FI+  L+ K  + K +QI LTGF+  K+  +FM ELW LLLSAQ N +G+P
Sbjct: 61  GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP 120

Query: 121 QQFLDAKEEEIRKKKAETDFLA-----NEIQKKREKENKEMEEQRSKN 163
             FL+ K+EEI++++ E + LA     +E ++KR+KE+K+  E+R ++
Sbjct: 121 TAFLELKKEEIKQRQIEQEKLASMKKQDEDKEKRDKEDKDNREKRDRS 168

[Close]

BLAST of CmoCh13G001060 vs. ExPASy Swiss-Prot
Match: Q8IYB3 (Serine/arginine repetitive matrix protein 1 OS=Homo sapiens OX=9606 GN=SRRM1 PE=1 SV=2)

HSP 1 Score: 155.2 bits (391), Expect = 6.9e-37
Identity = 82/161 (50.93%), Postives = 115/161 (71.43%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           M  GFFRGTS +QD RFSNKQ KLLK  KF   L++ VD +KV ++VIKPWI  R TE+L
Sbjct: 1   MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFME-KSTVKFMKELWTLLLSAQTNASGVP 120
           GFED+V+I FI+  L+ K  + K +QI LTGF+  K+  +FM ELW LLLSAQ N +G+P
Sbjct: 61  GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP 120

Query: 121 QQFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRS 161
             FL+ K+EEI++++ E + LA+  ++  +K+ ++ EE+ S
Sbjct: 121 SAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKES 161

[Close]

BLAST of CmoCh13G001060 vs. ExPASy Swiss-Prot
Match: Q5R5Q2 (Serine/arginine repetitive matrix protein 1 OS=Pongo abelii OX=9601 GN=SRRM1 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.9e-37
Identity = 82/161 (50.93%), Postives = 115/161 (71.43%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           M  GFFRGTS +QD RFSNKQ KLLK  KF   L++ VD +KV ++VIKPWI  R TE+L
Sbjct: 1   MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFME-KSTVKFMKELWTLLLSAQTNASGVP 120
           GFED+V+I FI+  L+ K  + K +QI LTGF+  K+  +FM ELW LLLSAQ N +G+P
Sbjct: 61  GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP 120

Query: 121 QQFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRS 161
             FL+ K+EEI++++ E + LA+  ++  +K+ ++ EE+ S
Sbjct: 121 SAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKES 161

[Close]

BLAST of CmoCh13G001060 vs. ExPASy Swiss-Prot
Match: Q52KI8 (Serine/arginine repetitive matrix protein 1 OS=Mus musculus OX=10090 GN=Srrm1 PE=1 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 9.0e-37
Identity = 82/161 (50.93%), Postives = 115/161 (71.43%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           M  GFFRGTS +QD RFSNKQ KLLK  KF   L++ VD +KV ++VIKPWI  R TE+L
Sbjct: 1   MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFME-KSTVKFMKELWTLLLSAQTNASGVP 120
           GFED+V+I FI+  L+ K  + K +QI LTGF+  K+  +FM ELW LLLSAQ N +G+P
Sbjct: 61  GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP 120

Query: 121 QQFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRS 161
             FL+ K+EEI++++ E + LA+  ++  +K+ ++ EE+ S
Sbjct: 121 SAFLELKKEEIKQRQIEQEKLASLKKQDEDKDKRDKEEKES 161

[Close]

BLAST of CmoCh13G001060 vs. ExPASy Swiss-Prot
Match: Q9USH5 (PWI domain-containing protein C825.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC825.05c PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.1e-30
Identity = 68/170 (40.00%), Postives = 105/170 (61.76%), Query Frame = 0


Query: 4   GFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELLGFE 63
           GF++G + +Q+T F+    KL++S KFPA  D  VD  KV ++V+KPWIATR  EL+GFE
Sbjct: 3   GFYKGVAAEQETLFTTADKKLMRSTKFPASYDTKVDMKKVNIEVLKPWIATRLNELIGFE 62

Query: 64  DEVLINFIYGLLD-------------SKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLS 123
           DEV+INF+YG+L+                ++ ++VQ+ LTGF+E +   F +ELW+L++S
Sbjct: 63  DEVVINFVYGMLEEAVEASKTSDSQNESTLDPRKVQLNLTGFLESNATAFTEELWSLIIS 122

Query: 124 AQTNASGVPQQFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRS 161
           A  N  G+P++F+  K+EEI K K  T+    E +   +  N+    + S
Sbjct: 123 ASQNQYGIPEKFILEKKEEISKLKDRTEASKEESKTVTDHSNRRESRRES 172

[Close]

BLAST of CmoCh13G001060 vs. ExPASy TrEMBL
Match: A0A6J1HJM7 (serine/arginine repetitive matrix protein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464695 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.6e-81
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL
Sbjct: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120
           GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ
Sbjct: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120

Query: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 164
           QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM
Sbjct: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 163

[Close]

BLAST of CmoCh13G001060 vs. ExPASy TrEMBL
Match: A0A6J1HLI6 (serine/arginine repetitive matrix protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464695 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.6e-81
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL
Sbjct: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120
           GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ
Sbjct: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120

Query: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 164
           QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM
Sbjct: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 163

[Close]

BLAST of CmoCh13G001060 vs. ExPASy TrEMBL
Match: A0A6J1I323 (serine/arginine repetitive matrix protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469467 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.8e-79
Identity = 158/163 (96.93%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           MSGGFFRGT+ DQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMD+IKPWIATRATELL
Sbjct: 1   MSGGFFRGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDIIKPWIATRATELL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120
           GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEK+TVKFMKELWTLLLSAQTNASGVPQ
Sbjct: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQTNASGVPQ 120

Query: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 164
           QFLDAKE EIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM
Sbjct: 121 QFLDAKEVEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 163

[Close]

BLAST of CmoCh13G001060 vs. ExPASy TrEMBL
Match: A0A6J1I445 (serine/arginine repetitive matrix protein 1-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111469467 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.8e-79
Identity = 158/163 (96.93%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           MSGGFFRGT+ DQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMD+IKPWIATRATELL
Sbjct: 1   MSGGFFRGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDIIKPWIATRATELL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120
           GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEK+TVKFMKELWTLLLSAQTNASGVPQ
Sbjct: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQTNASGVPQ 120

Query: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 164
           QFLDAKE EIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM
Sbjct: 121 QFLDAKEVEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 163

[Close]

BLAST of CmoCh13G001060 vs. ExPASy TrEMBL
Match: A0A6J1I0S7 (serine/arginine repetitive matrix protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469467 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.8e-79
Identity = 158/163 (96.93%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           MSGGFFRGT+ DQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMD+IKPWIATRATELL
Sbjct: 1   MSGGFFRGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDIIKPWIATRATELL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120
           GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEK+TVKFMKELWTLLLSAQTNASGVPQ
Sbjct: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQTNASGVPQ 120

Query: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 164
           QFLDAKE EIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM
Sbjct: 121 QFLDAKEVEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 163

[Close]

BLAST of CmoCh13G001060 vs. NCBI nr
Match: KAG6583409.1 (Serine/arginine repetitive matrix protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339.0 bits (868), Expect = 2.6e-89
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL
Sbjct: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120
           GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ
Sbjct: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120

Query: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNMLASAIIWVHVLYLELL 180
           QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRS+NMLASAIIWVHVLYLELL
Sbjct: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSRNMLASAIIWVHVLYLELL 179

[Close]

BLAST of CmoCh13G001060 vs. NCBI nr
Match: XP_022964686.1 (serine/arginine repetitive matrix protein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 310.8 bits (795), Expect = 7.4e-81
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL
Sbjct: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120
           GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ
Sbjct: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120

Query: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 164
           QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM
Sbjct: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 163

[Close]

BLAST of CmoCh13G001060 vs. NCBI nr
Match: XP_022964685.1 (serine/arginine repetitive matrix protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 310.8 bits (795), Expect = 7.4e-81
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL
Sbjct: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120
           GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ
Sbjct: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120

Query: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 164
           QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM
Sbjct: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 163

[Close]

BLAST of CmoCh13G001060 vs. NCBI nr
Match: KAG7019174.1 (Serine/arginine repetitive matrix protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.4 bits (786), Expect = 8.2e-80
Identity = 161/163 (98.77%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVD TKVKMDVIKPWIATRATELL
Sbjct: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDMTKVKMDVIKPWIATRATELL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120
           GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ
Sbjct: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120

Query: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 164
           QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRS+NM
Sbjct: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSRNM 163

[Close]

BLAST of CmoCh13G001060 vs. NCBI nr
Match: XP_022970510.1 (serine/arginine repetitive matrix protein 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 303.5 bits (776), Expect = 1.2e-78
Identity = 158/163 (96.93%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           MSGGFFRGT+ DQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMD+IKPWIATRATELL
Sbjct: 1   MSGGFFRGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDIIKPWIATRATELL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120
           GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEK+TVKFMKELWTLLLSAQTNASGVPQ
Sbjct: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQTNASGVPQ 120

Query: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 164
           QFLDAKE EIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM
Sbjct: 121 QFLDAKEVEIRKKKAETDFLANEIQKKREKENKEMEEQRSKNM 163

[Close]

BLAST of CmoCh13G001060 vs. TAIR 10
Match: AT2G29210.1 (splicing factor PWI domain-containing protein )

HSP 1 Score: 225.3 bits (573), Expect = 3.8e-59
Identity = 120/156 (76.92%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 1   MSGGFFRGTSTDQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIKPWIATRATELL 60
           MSGGFFRGTS +QDTRFSNKQAKL+KSQKF  EL+ LVD TKVKMDV+KPWIATR TELL
Sbjct: 1   MSGGFFRGTSAEQDTRFSNKQAKLMKSQKFAPELENLVDITKVKMDVMKPWIATRVTELL 60

Query: 61  GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKSTVKFMKELWTLLLSAQTNASGVPQ 120
           G EDEVLINFIYGLLD K VNGKE+QI LTGFMEK+T KFMKELWTLLLSAQ N SGVPQ
Sbjct: 61  GIEDEVLINFIYGLLDGKVVNGKEIQITLTGFMEKNTGKFMKELWTLLLSAQNNPSGVPQ 120

Query: 121 QFLDAKEEEIRKKKAETDFLANEIQKKREKENKEME 157
           QFLDA+  E +KK+ E    ANEI KKRE + K +E
Sbjct: 121 QFLDARAAETKKKQEE----ANEIMKKREGDKKNIE 152

The following BLAST results are available for this feature:

BLAST of CmoCh13G001060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZMJ9	1.8e-37	51.19	Serine/arginine repetitive matrix protein 1 OS=Gallus gallus OX=9031 GN=SRRM1 PE...	[more]
Q8IYB3	6.9e-37	50.93	Serine/arginine repetitive matrix protein 1 OS=Homo sapiens OX=9606 GN=SRRM1 PE=...	[more]
Q5R5Q2	6.9e-37	50.93	Serine/arginine repetitive matrix protein 1 OS=Pongo abelii OX=9601 GN=SRRM1 PE=...	[more]
Q52KI8	9.0e-37	50.93	Serine/arginine repetitive matrix protein 1 OS=Mus musculus OX=10090 GN=Srrm1 PE...	[more]
Q9USH5	8.1e-30	40.00	PWI domain-containing protein C825.05c OS=Schizosaccharomyces pombe (strain 972 ...	[more]

BLAST of CmoCh13G001060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJM7	3.6e-81	100.00	serine/arginine repetitive matrix protein 1-like isoform X2 OS=Cucurbita moschat...	[more]
A0A6J1HLI6	3.6e-81	100.00	serine/arginine repetitive matrix protein 1-like isoform X1 OS=Cucurbita moschat...	[more]
A0A6J1I323	5.8e-79	96.93	serine/arginine repetitive matrix protein 1-like isoform X1 OS=Cucurbita maxima ...	[more]
A0A6J1I445	5.8e-79	96.93	serine/arginine repetitive matrix protein 1-like isoform X4 OS=Cucurbita maxima ...	[more]
A0A6J1I0S7	5.8e-79	96.93	serine/arginine repetitive matrix protein 1-like isoform X2 OS=Cucurbita maxima ...	[more]

BLAST of CmoCh13G001060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583409.1	2.6e-89	99.44	Serine/arginine repetitive matrix protein 1, partial [Cucurbita argyrosperma sub...	[more]
XP_022964686.1	7.4e-81	100.00	serine/arginine repetitive matrix protein 1-like isoform X2 [Cucurbita moschata]	[more]
XP_022964685.1	7.4e-81	100.00	serine/arginine repetitive matrix protein 1-like isoform X1 [Cucurbita moschata]	[more]
KAG7019174.1	8.2e-80	98.77	Serine/arginine repetitive matrix protein 1 [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022970510.1	1.2e-78	96.93	serine/arginine repetitive matrix protein 1-like isoform X1 [Cucurbita maxima]	[more]

BLAST of CmoCh13G001060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29210.1	3.8e-59	76.92	splicing factor PWI domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 123..161
None	No IPR available	GENE3D	1.20.1390.10	PWI domain	coord: 33..125 e-value: 4.9E-35 score: 121.6
None	No IPR available	PANTHER	PTHR23148:SF0	SERINE/ARGININE REPETITIVE MATRIX PROTEIN 1	coord: 1..164
None	No IPR available	PANTHER	PTHR23148	SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN	coord: 1..164
IPR002483	PWI domain	SMART	SM00311	pwi_2	coord: 40..114 e-value: 2.5E-29 score: 113.4
IPR002483	PWI domain	PFAM	PF01480	PWI	coord: 46..115 e-value: 1.8E-27 score: 95.5
IPR002483	PWI domain	PROSITE	PS51025	PWI	coord: 27..125 score: 42.242195
IPR036483	PWI domain superfamily	SUPERFAMILY	101233	PWI domain	coord: 25..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G001060.1	CmoCh13G001060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding