CmoCh13G001050 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G001050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	serine/arginine repetitive matrix protein 1-like isoform X3
Location	Cmo_Chr13: 585629 .. 587189 (-)
RNA-Seq Expression	CmoCh13G001050
Synteny	CmoCh13G001050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACCTTCATCCTCACCAATACAGAAATTTGATAGGCCATCACCACATCCTCTAGAACGTAGATCTCCATCATCTCCAGCACGTCTCAAGAGATCAAGCCTTTCTCAACATAGATCCATTTCACCATATGATCAGAATTATTCATCAAAGGAGCGGGGAAACCGATCGCCTGTCAAAGTAAAATCTCCCAGGGTCAGAACCAGGTACTTCTCTTTTCCTGTATTAAGCTTGCATCCTGTGTGATGGTTTCTACCTACTTAGCTGCATGTTATTAATCTGTTGATCAAAACTGCTAGATGGTAAGAGTACTAGCCATCTATAGAACAGTAAATCTGCAGGCTGCTGTTGAAACTTTTTAGTTCTTGAATTTGTGAATTAATTTAACTTGATCTTTAGTGAAGCATCTAAAGAAAATTAGTTTGGATTCTTTTACTATTTGTTTGGCTCATATGATTGTGATTTGCTTTGCTGATGGGTTTTTTGTGATGTCCCACGTTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGTGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGAAAAGCCCAAAGAGGACAATATTTGCTAACGGTGGATCTGGGTCGTTACAGTTTTATTCATCTGTTTTATGATAAGTTCACTCACCTGGAGTGTTAGTTTATGGACTTGCCCCTGATTCTTTGGAATTTAGAAAGAAATATCAGGAACTAAGGATCCTCGTAGAAGGGTATTCTGTTATTTTAATCGTTTATACGTGAAATTACAGGCCTGTTACTCTTGTTTTTGTTTTATATTTATTTTATAGTGATGAAAGAAGCTACTCACGCCGAGGTAAAGCCAAGGAAACTGAGGCTCGGACTGTCGAAAATAATAAGGGTAGGAAAAGACACAGAAGATCAGACAGGAGTGACACTTCTTCGGAGAGAAGACACAGAAGATTAGACAGGCGTGACACTTATTCGGAGAGAAGACACAGAAGATCAGACAGGCGCGTCACTTCTTCGGAAGACAGCTATGATAGTGAATTGGAGAGGAAGGAGGCCAGGAGAAGGAAGGAGGAGGAGGAGGAGAGGAGGTGTTGGAAGGAGAAGAAGCGACAAAGACGTGAAGAGCATGGACGTAAAAAGGGAAAGCGGCGTGCTGAGAAGACGAAAGCTAAGACTCTCAGTGATGATTGCTCGGACGATGGTCGAGCTGTAAGGGAAGTGTGTCGTCCGAGTGATGGTGCGTATGAGGCCGAGCAGAGAAGGTTAGAGGTCGAGTTGAGGAATAAGGCACTGGAAGCATTCATTGCAAGGAAAGGGAGAAGGCATAATAAATCTTCAGAATAGTCTTTTCCTTCCACATAAGAGCTCTTGATAAATGGTGATTTCTTTGATGTTCATTTGAATGCAAACTCAACACAGATCTTTCTCCTTGCCTTTCTTGAGCTTGTTTTGGAGTTCTTTTAGAATGGCAGCCTTACCTTAGCTACTTAGAGAAAATCGTATCGAATCTTTAGCTCAATGTTGCATAGACGTTTAAAAAGT

mRNA sequence

ATGTCACCTTCATCCTCACCAATACAGAAATTTGATAGGCCATCACCACATCCTCTAGAACGTAGATCTCCATCATCTCCAGCACGTCTCAAGAGATCAAGCCTTTCTCAACATAGATCCATTTCACCATATGATCAGAATTATTCATCAAAGGAGCGGGGAAACCGATCGCCTGTCAAAGTAAAATCTCCCAGGGTCAGAACCAGTGATGAAAGAAGCTACTCACGCCGAGGTAAAGCCAAGGAAACTGAGGCTCGGACTGTCGAAAATAATAAGGGTAGGAAAAGACACAGAAGATCAGACAGGAGTGACACTTCTTCGGAGAGAAGACACAGAAGATTAGACAGGCGTGACACTTATTCGGAGAGAAGACACAGAAGATCAGACAGGCGCGTCACTTCTTCGGAAGACAGCTATGATAGTGAATTGGAGAGGAAGGAGGCCAGGAGAAGGAAGGAGGAGGAGGAGGAGAGGAGGTGTTGGAAGGAGAAGAAGCGACAAAGACGTGAAGAGCATGGACGTAAAAAGGGAAAGCGGCGTGCTGAGAAGACGAAAGCTAAGACTCTCAGTGATGATTGCTCGGACGATGGTCGAGCTGTAAGGGAAGTGTGTCGTCCGAGTGATGGTGCGTATGAGGCCGAGCAGAGAAGGTTAGAGGTCGAGTTGAGGAATAAGGCACTGGAAGCATTCATTGCAAGGAAAGGGAGAAGGCATAATAAATCTTCAGAATAGTCTTTTCCTTCCACATAAGAGCTCTTGATAAATGGTGATTTCTTTGATGTTCATTTGAATGCAAACTCAACACAGATCTTTCTCCTTGCCTTTCTTGAGCTTGTTTTGGAGTTCTTTTAGAATGGCAGCCTTACCTTAGCTACTTAGAGAAAATCGTATCGAATCTTTAGCTCAATGTTGCATAGACGTTTAAAAAGT

Coding sequence (CDS)

ATGTCACCTTCATCCTCACCAATACAGAAATTTGATAGGCCATCACCACATCCTCTAGAACGTAGATCTCCATCATCTCCAGCACGTCTCAAGAGATCAAGCCTTTCTCAACATAGATCCATTTCACCATATGATCAGAATTATTCATCAAAGGAGCGGGGAAACCGATCGCCTGTCAAAGTAAAATCTCCCAGGGTCAGAACCAGTGATGAAAGAAGCTACTCACGCCGAGGTAAAGCCAAGGAAACTGAGGCTCGGACTGTCGAAAATAATAAGGGTAGGAAAAGACACAGAAGATCAGACAGGAGTGACACTTCTTCGGAGAGAAGACACAGAAGATTAGACAGGCGTGACACTTATTCGGAGAGAAGACACAGAAGATCAGACAGGCGCGTCACTTCTTCGGAAGACAGCTATGATAGTGAATTGGAGAGGAAGGAGGCCAGGAGAAGGAAGGAGGAGGAGGAGGAGAGGAGGTGTTGGAAGGAGAAGAAGCGACAAAGACGTGAAGAGCATGGACGTAAAAAGGGAAAGCGGCGTGCTGAGAAGACGAAAGCTAAGACTCTCAGTGATGATTGCTCGGACGATGGTCGAGCTGTAAGGGAAGTGTGTCGTCCGAGTGATGGTGCGTATGAGGCCGAGCAGAGAAGGTTAGAGGTCGAGTTGAGGAATAAGGCACTGGAAGCATTCATTGCAAGGAAAGGGAGAAGGCATAATAAATCTTCAGAATAG

Protein sequence

MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVKVKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTYSERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRRAEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNKSSE

Homology

[Close]

BLAST of CmoCh13G001050 vs. ExPASy TrEMBL
Match: A0A6J1HLM2 (serine/arginine repetitive matrix protein 1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111464695 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.4e-115
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 60
           MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK
Sbjct: 470 MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 529

Query: 61  VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY 120
           VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY
Sbjct: 530 VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY 589

Query: 121 SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 180
           SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR
Sbjct: 590 SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 649

Query: 181 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 240
           AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK
Sbjct: 650 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 709

Query: 241 SSE 244
           SSE
Sbjct: 710 SSE 712

[Close]

BLAST of CmoCh13G001050 vs. ExPASy TrEMBL
Match: A0A6J1HLI6 (serine/arginine repetitive matrix protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464695 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.4e-115
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 60
           MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK
Sbjct: 514 MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 573

Query: 61  VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY 120
           VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY
Sbjct: 574 VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY 633

Query: 121 SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 180
           SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR
Sbjct: 634 SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 693

Query: 181 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 240
           AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK
Sbjct: 694 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 753

Query: 241 SSE 244
           SSE
Sbjct: 754 SSE 756

[Close]

BLAST of CmoCh13G001050 vs. ExPASy TrEMBL
Match: A0A6J1HJM7 (serine/arginine repetitive matrix protein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464695 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.3e-105
Identity = 229/243 (94.24%), Postives = 229/243 (94.24%), Query Frame = 0


Query: 1   MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 60
           MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK
Sbjct: 514 MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 573

Query: 61  VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY 120
           VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRL      
Sbjct: 574 VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRL------ 633

Query: 121 SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 180
                   DRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR
Sbjct: 634 --------DRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 693

Query: 181 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 240
           AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK
Sbjct: 694 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 742

Query: 241 SSE 244
           SSE
Sbjct: 754 SSE 742

[Close]

BLAST of CmoCh13G001050 vs. ExPASy TrEMBL
Match: A0A6J1I0S7 (serine/arginine repetitive matrix protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469467 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 3.4e-90
Identity = 213/250 (85.20%), Postives = 215/250 (86.00%), Query Frame = 0


Query: 1   MSPSSSPIQKFDRPSPH-------PLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKER 60
           M PSSSPIQK DRPSPH       PLERRSPSSPARLKRSSLSQHRSISPY  +YSSKER
Sbjct: 557 MLPSSSPIQKLDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQHRSISPYGLSYSSKER 616

Query: 61  GNRSPVKVKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRR 120
           GNRSPVKVKSPRVRTSDE+SYSRRGKAKE EAR VENNKGRKRHRRSDRSDTSSERRHRR
Sbjct: 617 GNRSPVKVKSPRVRTSDEKSYSRRGKAKEAEARIVENNKGRKRHRRSDRSDTSSERRHRR 676

Query: 121 LDRRDTYSERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHG 180
            DRRDT SE            SEDSYDSELERKEARRRK  EEERR  KEKKRQRREEHG
Sbjct: 677 SDRRDTSSE------------SEDSYDSELERKEARRRK--EEERRWRKEKKRQRREEHG 736

Query: 181 RKKGKRRAEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIAR 240
           RKK KRRAEKT AKTLSDDCSDDGRAVRE CRPSDGAYEAEQRRLEVELRNKALEAFIAR
Sbjct: 737 RKKEKRRAEKTNAKTLSDDCSDDGRAVREECRPSDGAYEAEQRRLEVELRNKALEAFIAR 792

Query: 241 KGRRHNKSSE 244
           KGRRHNK SE
Sbjct: 797 KGRRHNKPSE 792

[Close]

BLAST of CmoCh13G001050 vs. ExPASy TrEMBL
Match: A0A6J1HZB4 (serine/arginine repetitive matrix protein 1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111469467 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.7e-86
Identity = 213/271 (78.60%), Postives = 215/271 (79.34%), Query Frame = 0


Query: 1   MSPSSSPIQKFDRPSPH-------PLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKER 60
           M PSSSPIQK DRPSPH       PLERRSPSSPARLKRSSLSQHRSISPY  +YSSKER
Sbjct: 513 MLPSSSPIQKLDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQHRSISPYGLSYSSKER 572

Query: 61  GNRSPVKVKSPRVRTSDERSYSRRGKAKETEARTVENN---------------------K 120
           GNRSPVKVKSPRVRTSDE+SYSRRGKAKE EAR VENN                     K
Sbjct: 573 GNRSPVKVKSPRVRTSDEKSYSRRGKAKEAEARIVENNNNRGEVSDSDMEEGYKRKTRSK 632

Query: 121 GRKRHRRSDRSDTSSERRHRRLDRRDTYSERRHRRSDRRVTSSEDSYDSELERKEARRRK 180
           GRKRHRRSDRSDTSSERRHRR DRRDT SE            SEDSYDSELERKEARRRK
Sbjct: 633 GRKRHRRSDRSDTSSERRHRRSDRRDTSSE------------SEDSYDSELERKEARRRK 692

Query: 181 EEEEERRCWKEKKRQRREEHGRKKGKRRAEKTKAKTLSDDCSDDGRAVREVCRPSDGAYE 240
             EEERR  KEKKRQRREEHGRKK KRRAEKT AKTLSDDCSDDGRAVRE CRPSDGAYE
Sbjct: 693 --EEERRWRKEKKRQRREEHGRKKEKRRAEKTNAKTLSDDCSDDGRAVREECRPSDGAYE 752

Query: 241 AEQRRLEVELRNKALEAFIARKGRRHNKSSE 244
           AEQRRLEVELRNKALEAFIARKGRRHNK SE
Sbjct: 753 AEQRRLEVELRNKALEAFIARKGRRHNKPSE 769

[Close]

BLAST of CmoCh13G001050 vs. NCBI nr
Match: XP_022964688.1 (serine/arginine repetitive matrix protein 1-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 425.6 bits (1093), Expect = 2.8e-115
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 60
           MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK
Sbjct: 470 MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 529

Query: 61  VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY 120
           VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY
Sbjct: 530 VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY 589

Query: 121 SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 180
           SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR
Sbjct: 590 SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 649

Query: 181 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 240
           AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK
Sbjct: 650 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 709

Query: 241 SSE 244
           SSE
Sbjct: 710 SSE 712

[Close]

BLAST of CmoCh13G001050 vs. NCBI nr
Match: XP_022964685.1 (serine/arginine repetitive matrix protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 425.6 bits (1093), Expect = 2.8e-115
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 60
           MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK
Sbjct: 514 MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 573

Query: 61  VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY 120
           VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY
Sbjct: 574 VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY 633

Query: 121 SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 180
           SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR
Sbjct: 634 SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 693

Query: 181 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 240
           AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK
Sbjct: 694 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 753

Query: 241 SSE 244
           SSE
Sbjct: 754 SSE 756

[Close]

BLAST of CmoCh13G001050 vs. NCBI nr
Match: KAG7019174.1 (Serine/arginine repetitive matrix protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 396.0 bits (1016), Expect = 2.4e-106
Identity = 231/243 (95.06%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 60
           M PSSSPIQKFDRPSPHPLERRSPSSPARLK SSLSQHRSISPYD++YSSKERGNRSPVK
Sbjct: 514 MPPSSSPIQKFDRPSPHPLERRSPSSPARLKGSSLSQHRSISPYDRSYSSKERGNRSPVK 573

Query: 61  VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY 120
           VKSPRV TSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY
Sbjct: 574 VKSPRVITSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY 633

Query: 121 SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 180
           SERRHRRSDRRVTSSEDSYDSELERKEARRR++EEEERRCWKEKKRQRREEH RKK KRR
Sbjct: 634 SERRHRRSDRRVTSSEDSYDSELERKEARRRRKEEEERRCWKEKKRQRREEHRRKKEKRR 693

Query: 181 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 240
           AEKTKAKTLSDD SDDGRAVREVCR SDGAYEAEQRRLEVELRNKALEAFIARKGR HNK
Sbjct: 694 AEKTKAKTLSDDFSDDGRAVREVCRSSDGAYEAEQRRLEVELRNKALEAFIARKGRTHNK 753

Query: 241 SSE 244
           SSE
Sbjct: 754 SSE 756

[Close]

BLAST of CmoCh13G001050 vs. NCBI nr
Match: XP_022964686.1 (serine/arginine repetitive matrix protein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 392.5 bits (1007), Expect = 2.6e-105
Identity = 229/243 (94.24%), Postives = 229/243 (94.24%), Query Frame = 0


Query: 1   MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 60
           MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK
Sbjct: 514 MSPSSSPIQKFDRPSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVK 573

Query: 61  VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTY 120
           VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRL      
Sbjct: 574 VKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRL------ 633

Query: 121 SERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 180
                   DRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR
Sbjct: 634 --------DRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRR 693

Query: 181 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 240
           AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK
Sbjct: 694 AEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNK 742

Query: 241 SSE 244
           SSE
Sbjct: 754 SSE 742

[Close]

BLAST of CmoCh13G001050 vs. NCBI nr
Match: XP_022970511.1 (serine/arginine repetitive matrix protein 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 341.3 bits (874), Expect = 7.0e-90
Identity = 213/250 (85.20%), Postives = 215/250 (86.00%), Query Frame = 0


Query: 1   MSPSSSPIQKFDRPSPH-------PLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKER 60
           M PSSSPIQK DRPSPH       PLERRSPSSPARLKRSSLSQHRSISPY  +YSSKER
Sbjct: 557 MLPSSSPIQKLDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQHRSISPYGLSYSSKER 616

Query: 61  GNRSPVKVKSPRVRTSDERSYSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRR 120
           GNRSPVKVKSPRVRTSDE+SYSRRGKAKE EAR VENNKGRKRHRRSDRSDTSSERRHRR
Sbjct: 617 GNRSPVKVKSPRVRTSDEKSYSRRGKAKEAEARIVENNKGRKRHRRSDRSDTSSERRHRR 676

Query: 121 LDRRDTYSERRHRRSDRRVTSSEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHG 180
            DRRDT SE            SEDSYDSELERKEARRRK  EEERR  KEKKRQRREEHG
Sbjct: 677 SDRRDTSSE------------SEDSYDSELERKEARRRK--EEERRWRKEKKRQRREEHG 736

Query: 181 RKKGKRRAEKTKAKTLSDDCSDDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIAR 240
           RKK KRRAEKT AKTLSDDCSDDGRAVRE CRPSDGAYEAEQRRLEVELRNKALEAFIAR
Sbjct: 737 RKKEKRRAEKTNAKTLSDDCSDDGRAVREECRPSDGAYEAEQRRLEVELRNKALEAFIAR 792

Query: 241 KGRRHNKSSE 244
           KGRRHNK SE
Sbjct: 797 KGRRHNKPSE 792

The following BLAST results are available for this feature:

BLAST of CmoCh13G001050 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G001050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLM2	1.4e-115	100.00	serine/arginine repetitive matrix protein 1-like isoform X3 OS=Cucurbita moschat...	[more]
A0A6J1HLI6	1.4e-115	100.00	serine/arginine repetitive matrix protein 1-like isoform X1 OS=Cucurbita moschat...	[more]
A0A6J1HJM7	1.3e-105	94.24	serine/arginine repetitive matrix protein 1-like isoform X2 OS=Cucurbita moschat...	[more]
A0A6J1I0S7	3.4e-90	85.20	serine/arginine repetitive matrix protein 1-like isoform X2 OS=Cucurbita maxima ...	[more]
A0A6J1HZB4	1.7e-86	78.60	serine/arginine repetitive matrix protein 1-like isoform X3 OS=Cucurbita maxima ...	[more]

BLAST of CmoCh13G001050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964688.1	2.8e-115	100.00	serine/arginine repetitive matrix protein 1-like isoform X3 [Cucurbita moschata]	[more]
XP_022964685.1	2.8e-115	100.00	serine/arginine repetitive matrix protein 1-like isoform X1 [Cucurbita moschata]	[more]
KAG7019174.1	2.4e-106	95.06	Serine/arginine repetitive matrix protein 1 [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022964686.1	2.6e-105	94.24	serine/arginine repetitive matrix protein 1-like isoform X2 [Cucurbita moschata]	[more]
XP_022970511.1	7.0e-90	85.20	serine/arginine repetitive matrix protein 1-like isoform X2 [Cucurbita maxima]	[more]

BLAST of CmoCh13G001050 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 136..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G001050.1	CmoCh13G001050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing