CmoCh13G001020 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G001020
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Elongin-C
Location	Cmo_Chr13: 571139 .. 573546 (-)
RNA-Seq Expression	CmoCh13G001020
Synteny	CmoCh13G001020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAACGAAAATTTGGTTGCAACGTGAAGAAAGCGAGGGGAAGAGGAATATCTCTCATTTCTGCAAAATAGTTCAGAGCCAAATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCTTGATCCACAAGGATGCTGCCATGGTTTCTCAGACCATTCGAAACATGCTTACTTCCCCAGGTCTCCCTCTCTCTGTTGATCAATCCACTTTTTGAGGCTTACGATCTAGTTTTTTATTTCTTGCTCATGTATGGAGAAGAATGGATTAGGTGAAATCTAGGAATTGTTGTTTTGTTTTGAAATTTTCATGTTTAGGGCTTTGTTTTACTATTTTAGTTTTTATGGATAGGTAATTTTGCTGAATCGCAACACAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGGTTTTTGTTTCTTTTTTTATGTCGACTTCTCTCTAATTATGATTAGTCTGAGATGAATTGCCTGAATTTCTAGCAAAGTAAGATGCTGATGTTACCTTTTGCTTTATTTCGGATTTCAGGTTCGGTTAGTTTTTCTTAAACTGGTCCTGTTCCAATGATTACTAATTGGAAGTGTAAATCGTTTACACTGAATCACGTGGGAATGAAACTTTTGATGCTTATTGTCTGATAAAGATATTAGTTATGGATGTTATTGTAGTTCTTGTTACTATTCTGGTCCATGATCTTGGTCTCTTTACATTTTTTTCGTTTTTTTTTTTTTTTTTTCTGGAATTGTTTGTTAACGTAGGGCTGCATCCTCTCCAATTAATTGATAATAGAAACGAAGCGTAGGGCGTCTAGCATTTGGACTATGCAGATTGATCTTGTTGGTCTGAAATTTTAGATTCGTTTCAGGAAAAAAGAAGAGAAGTTTTGTGAGAAACAAGATAGAATGTAGTATGTTTGATCCGGATCAACTTATCATAAAACCATTCATGTTTCTTTTGTTATATACTTTTGTTGTTTGTGTAAGAGATGTCTTGTAGGCATACCCTTGAGTTAGAACTGTACATAAGAGTTCTTATATGTTAATTGGATTTAGAAGTCAAATGTTTTGCGCCACAATAGGACAGTACATGGATGTAAATTATAATGGAGGAAGGCTTGACAGCTGACGATGACAATCCTCCTAGGCTAAACATTACTATTATTATTAAAAAAGAATTATTGAGAAACCTGGCTGTCATTGAGAAGAAAAGAAATACATGGACATACAAAAAGGGAGTCGACTACAAGAAGGGACTTCAGTCAATTAGAATGAGTATACTCGTAAACAAAATTGAGTCGGAGTAAGCTCTTCTATTTATTGCGACTTGTCGGAGTGTTTCTAAGGCATGTGGGAAAGTGCATGCTTATGGAGTTTAGGTCAATTTTGTACAATGTTTTGGTCATTTGGTCATTTGGTCATTTGGTCATTGGTGGACAACAGATGAAATTACACTCTTCATGTAAACATATGTGACTCCCCTCATTTTTCTGGCAATTTTGTGGGGACTTAACTGATTAAAGATTATGCTGTTATAAATACTTACGCGTGTACCTCTGCATTCTCTTCGTTTCTTGTTTCGTTCTTTAACTCTGTGTCTCGGACATTGATTTCTTGCTTTTTGCCAGTGGGAAAGAGACCGAGTTCCCGATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGAAATGTGACCTCCGTGCAACCTTCCAGATAGAACCATTTGACATTATAATCAGGTGGCAATTATTGTAGGGATAAATGTTGGGTATTTTTGTACTTAGCTAGCCTCACTGAGATGACTTATAGAATACACTTGAAACATCTATGTTTCCATAACCTTTTGTTTTAAGGAGATATTGGTCGATGGTTCTTCAGAAGGTAAAGTACTTGTGTTGTGGGACTCTAAATTTTGGATGAAAGGATTTTGTGAGATCCTACGACGGTTGAAAAGGGAAACGAAACATTCCTTATAAGCGTGTGGAAACCTCTTCCTAGCATACGCGTTTTAAAACGGTGAGGCTGACGACGATACATAACCGACCAAAGCGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTATTATTGATTAAATCAATGAAACTTTAGGAGTCTGAAGAATCACTCTTTGGGCCCATTTTGATAGACCCTAGACTCTTCATTGAAGAGAAAATGCAATAAATACCTACGAATGAGTAGAATAGAATCTCCTATGGCATCCATTGTACAATCTTATCATCTTGGATCCAAAAGAGAGGAAGGGGGAAGAGAAGGTGTTGTGCGTGTAGTGAGGATTAATAAAAATCTACACTGATAATATATTCTCGG

mRNA sequence

TTTTAACGAAAATTTGGTTGCAACGTGAAGAAAGCGAGGGGAAGAGGAATATCTCTCATTTCTGCAAAATAGTTCAGAGCCAAATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCTTGATCCACAAGGATGCTGCCATGGTTTCTCAGACCATTCGAAACATGCTTACTTCCCCAGGTAATTTTGCTGAATCGCAACACAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGTGGGAAAGAGACCGAGTTCCCGATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGAAATGTGACCTCCGTGCAACCTTCCAGATAGAACCATTTGACATTATAATCAGGTGGCAATTATTGTAGGGATAAATGTTGGGTATTTTTGTACTTAGCTAGCCTCACTGAGATGACTTATAGAATACACTTGAAACATCTATGTTTCCATAACCTTTTGTTTTAAGGAGATATTGGTCGATGGTTCTTCAGAAGGTAAAGTACTTGTGTTGTGGGACTCTAAATTTTGGATGAAAGGATTTTGTGAGATCCTACGACGGTTGAAAAGGGAAACGAAACATTCCTTATAAGCGTGTGGAAACCTCTTCCTAGCATACGCGTTTTAAAACGGTGAGGCTGACGACGATACATAACCGACCAAAGCGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTATTATTGATTAAATCAATGAAACTTTAGGAGTCTGAAGAATCACTCTTTGGGCCCATTTTGATAGACCCTAGACTCTTCATTGAAGAGAAAATGCAATAAATACCTACGAATGAGTAGAATAGAATCTCCTATGGCATCCATTGTACAATCTTATCATCTTGGATCCAAAAGAGAGGAAGGGGGAAGAGAAGGTGTTGTGCGTGTAGTGAGGATTAATAAAAATCTACACTGATAATATATTCTCGG

Coding sequence (CDS)

ATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCTTGATCCACAAGGATGCTGCCATGGTTTCTCAGACCATTCGAAACATGCTTACTTCCCCAGGTAATTTTGCTGAATCGCAACACAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGTGGGAAAGAGACCGAGTTCCCGATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

Protein sequence

MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

Homology

[Close]

BLAST of CmoCh13G001020 vs. ExPASy Swiss-Prot
Match: Q2KII4 (Elongin-C OS=Bos taurus OX=9913 GN=ELOC PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of CmoCh13G001020 vs. ExPASy Swiss-Prot
Match: Q15369 (Elongin-C OS=Homo sapiens OX=9606 GN=ELOC PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of CmoCh13G001020 vs. ExPASy Swiss-Prot
Match: P83940 (Elongin-C OS=Mus musculus OX=10090 GN=Eloc PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of CmoCh13G001020 vs. ExPASy Swiss-Prot
Match: P83941 (Elongin-C OS=Rattus norvegicus OX=10116 GN=Eloc PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of CmoCh13G001020 vs. ExPASy Swiss-Prot
Match: Q9USX9 (Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=elc1 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-15
Identity = 41/95 (43.16%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 3  KEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKIC 62
          ++E V+LIS +GF F++ K+ A +S TIR +L + G F+E+Q  E TFP+I  T+LEK+C
Sbjct: 2  EKEYVRLISGDGFVFILEKEIACLSGTIRAIL-NEGIFSEAQKNECTFPDIRATLLEKVC 61

Query: 63 QYFYWNLQFASGKE-TEFPIEPELTLELMMAANYL 97
          +Y ++N ++ +  +  +F I PE+ LEL++ A YL
Sbjct: 62 EYLHYNYRYKNQLDIPKFDIPPEMVLELLVTAEYL 95

[Close]

BLAST of CmoCh13G001020 vs. ExPASy TrEMBL
Match: A0A6J1HJP6 (Elongin-C OS=Cucurbita moschata OX=3662 GN=LOC111464707 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.9e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CmoCh13G001020 vs. ExPASy TrEMBL
Match: A0A6J1DWE1 (Elongin-C OS=Momordica charantia OX=3673 GN=LOC111024690 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.4e-47
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CmoCh13G001020 vs. ExPASy TrEMBL
Match: A0A1S3C6T3 (Elongin-C OS=Cucumis melo OX=3656 GN=LOC103497125 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.4e-47
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CmoCh13G001020 vs. ExPASy TrEMBL
Match: A0A0A0LY44 (Elongin-C OS=Cucumis sativus OX=3659 GN=Csa_1G525280 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.4e-47
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CmoCh13G001020 vs. ExPASy TrEMBL
Match: A0A6J1I608 (Elongin-C OS=Cucurbita maxima OX=3661 GN=LOC111469518 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.6e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE TVKLISAEGFEFLIHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CmoCh13G001020 vs. NCBI nr
Match: XP_022964706.1 (elongin-C-like [Cucurbita moschata] >XP_023519299.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023521052.1 elongin-C-like [Cucurbita pepo subsp. pepo] >KAG6583404.1 Elongin-C, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019170.1 Elongin-C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.7 bits (509), Expect = 5.9e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CmoCh13G001020 vs. NCBI nr
Match: XP_038895699.1 (elongin-C [Benincasa hispida] >XP_038895700.1 elongin-C [Benincasa hispida])

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-47
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CmoCh13G001020 vs. NCBI nr
Match: XP_022158132.1 (elongin-C [Momordica charantia])

HSP 1 Score: 197.6 bits (501), Expect = 5.0e-47
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CmoCh13G001020 vs. NCBI nr
Match: XP_008457436.1 (PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo] >XP_008457437.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CmoCh13G001020 vs. NCBI nr
Match: XP_022970584.1 (elongin-C-like [Cucurbita maxima])

HSP 1 Score: 194.9 bits (494), Expect = 3.3e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE TVKLISAEGFEFLIHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEGTVKLISAEGFEFLIHKDAAMVSQTIRYMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CmoCh13G001020 vs. TAIR 10
Match: AT5G59140.1 (BTB/POZ domain-containing protein )

HSP 1 Score: 157.5 bits (397), Expect = 5.4e-39
Identity = 76/94 (80.85%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 5  ETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQY 64
          ETVKLIS EGFEF+I ++AAMVSQTIR+MLTSPG F+ES+   VTFP+ISTTILEKICQY
Sbjct: 3  ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62

Query: 65 FYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          FYW+LQ++ GKETEF IEPELTLELMMAANYLHT
Sbjct: 63 FYWSLQYSRGKETEFHIEPELTLELMMAANYLHT 96

The following BLAST results are available for this feature:

BLAST of CmoCh13G001020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2KII4	1.3e-18	47.83	Elongin-C OS=Bos taurus OX=9913 GN=ELOC PE=1 SV=1	[more]
Q15369	1.3e-18	47.83	Elongin-C OS=Homo sapiens OX=9606 GN=ELOC PE=1 SV=1	[more]
P83940	1.3e-18	47.83	Elongin-C OS=Mus musculus OX=10090 GN=Eloc PE=1 SV=1	[more]
P83941	1.3e-18	47.83	Elongin-C OS=Rattus norvegicus OX=10116 GN=Eloc PE=1 SV=1	[more]
Q9USX9	1.1e-15	43.16	Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=el...	[more]

BLAST of CmoCh13G001020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJP6	2.9e-48	100.00	Elongin-C OS=Cucurbita moschata OX=3662 GN=LOC111464707 PE=3 SV=1	[more]
A0A6J1DWE1	2.4e-47	97.96	Elongin-C OS=Momordica charantia OX=3673 GN=LOC111024690 PE=3 SV=1	[more]
A0A1S3C6T3	5.4e-47	96.94	Elongin-C OS=Cucumis melo OX=3656 GN=LOC103497125 PE=3 SV=1	[more]
A0A0A0LY44	5.4e-47	96.94	Elongin-C OS=Cucumis sativus OX=3659 GN=Csa_1G525280 PE=3 SV=1	[more]
A0A6J1I608	1.6e-46	97.96	Elongin-C OS=Cucurbita maxima OX=3661 GN=LOC111469518 PE=3 SV=1	[more]

BLAST of CmoCh13G001020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964706.1	5.9e-48	100.00	elongin-C-like [Cucurbita moschata] >XP_023519299.1 elongin-C-like [Cucurbita pe...	[more]
XP_038895699.1	1.3e-47	98.98	elongin-C [Benincasa hispida] >XP_038895700.1 elongin-C [Benincasa hispida]	[more]
XP_022158132.1	5.0e-47	97.96	elongin-C [Momordica charantia]	[more]
XP_008457436.1	1.1e-46	96.94	PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo] >XP_00...	[more]
XP_022970584.1	3.3e-46	97.96	elongin-C-like [Cucurbita maxima]	[more]

BLAST of CmoCh13G001020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59140.1	5.4e-39	80.85	BTB/POZ domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..98 e-value: 1.2E-7 score: 41.4
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 5..98 e-value: 2.0E-27 score: 97.6
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 3..97
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 6..67 e-value: 1.7E-8 score: 34.5
None	No IPR available	PANTHER	PTHR20648:SF0	ELONGIN-C	coord: 2..98
None	No IPR available	CDD	cd18321	BTB_POZ_EloC	coord: 6..98 e-value: 8.97205E-47 score: 143.112
IPR039948	Elongin-C	PANTHER	PTHR20648	ELONGIN-C	coord: 2..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G001020.1	CmoCh13G001020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0070449	elongin complex
molecular_function	GO:0003746	translation elongation factor activity