CmoCh13G000890 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G000890
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2-like
LocationCmo_Chr13: 534477 .. 536000 (-)
RNA-Seq ExpressionCmoCh13G000890
SyntenyCmoCh13G000890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTTTTAGGAGTAACATCCGGACGGGTAAAGTTTGTAAGGATAGTAATATAGTCCGGAAGAAATAACTAATCAAAAGCTTCTCCTTCAAGCTAAAACAACAATTAACTATGACTCTTGACCTAGATAACGTCCTAGACATAGGAGAGATTGGTGCAAGAGGGAATGCCTAGACGACGTTTTTCTTATTGAGCAGCTGAAAGTAGATCTATGGGTCCTTCCGTCCCTTGCTCCTGAATAAGGGTACGGATAGTTTTGTATACTTTTAAATGACTTGTTACATCATCTCGTAGTCTAAGAGTGACATTTTGTGGTTACAACATTCCTCATTCTTAGAGTCTAGACAACAAGTAATATTTTGAGGTAGTTTAACTCTCTAAAGTGCAAGAGATCGGTTCTCATTTTTAGTGTTTTTAATGATTAGACTTGTTCTGGCCTGTTTTTCTTCTTTATACACATCCAATTTATGCATTCATGAGAAATATAGTCTATGGCTCTATGCGAAATGTGATCCTTTTCTAAAGAACACAAGTTGGATCCTTGTAGCTTTGCTAGAACCCCATCCATCTTGGAACTTGATTTATGGATCGTGACTATTTAGTTTCATAACTTAAACAAGATTTATAAGGTGGCTATCTTGTTCTTACTATGGATACTAGCATCTCAATATTGATGTGACGTGCGTATTAGATAGACGTTAGTTGATTTGACGATAGAAAAATAGTTGGAAGTGACCAAGCATTAGCATTAGAGATACTGATGAGAAGGGTTTTGATGGAACATGACAGGTGATCCTGCAAGAGAGGTTCTGAAAGATGCGTGTCAGAACTTCATGGTGGTCTGCCACCATGTGAGGAACACATTCGACAAGGTTGTGCTTGATTTCAAACCCACCAATCCTGTGGGGAACATTAATATCAATTAGAATGGGACCCTTTTTCTCTTTCAACTTGTAACTTTCTTTCTTAGGCTCATCTATATTGCAGTTTACAGGTGATTGAGTTGGTTAGCTAATGGTGAGATTCCACATCGGTTGGAGAGGGAAACGAACCATTCCTTATAAGAGTGTGAAAATTTCTTCCTAGTAAATACGTTTTAAAACCGTGAGGCTGAAGACGATACGTAATGGGCTAAAGCAGACAATATTTGTTAATGATGAGTTTGGGCTGTTTCAAATGGGATTAGAGTTAGACGCTGGGCAATGTGCCAACGAGGACACTAGGCCCTCAAAGGGTAGATCGTGAGATCCCACATTGGTTGGAGAGAGGAAGAAACATTCCTTGTAAAGATGTGGAAATCTCTCCTTAGTAGACGCGTTTTAAAACTGTGAGGTTGATGAGCTTGGACTGTTACAAATGGCTTCTAGAACAGATTCGTTTCGTTGAATTTTGCTTGCTTTTACTGTTGAGATGCCTATGCACAGGGATTTCACGTTAATTATTGTATATTGTAGATCCATGTGAAAAGTAAAAGAAACAGGTATGATCGAATTTGATTGGATGTTTATGTGAGAAATCTCCC

mRNA sequence

ATGCCTCTTTTAGGAGTAACATCCGGACGGAGTCTAGACAACAAACTTGTTCTGGCCTGTTTTTCTTCTTTATACACATCCAATTTATGCATTCATGAGAAATATAGTCTATGGCTCTATGCGAAATGTGATCCTTTTCTAAAGAACACAAGTGATCCTGCAAGAGAGGTTCTGAAAGATGCGTGTCAGAACTTCATGGTGGTCTGCCACCATGTGAGGAACACATTCGACAAGGTTGTGCTTGATTTCAAACCCACCAATCCTGTGGGGAACATTAATATCAATTAGAATGGGACCCTTTTTCTCTTTCAACTTGTAACTTTCTTTCTTAGGCTCATCTATATTGCAGTTTACAGGTGATTGAGTTGGTTAGCTAATGGTGAGATTCCACATCGGTTGGAGAGGGAAACGAACCATTCCTTATAAGAGTGTGAAAATTTCTTCCTAGTAAATACGTTTTAAAACCGTGAGGCTGAAGACGATACGTAATGGGCTAAAGCAGACAATATTTGTTAATGATGAGTTTGGGCTGTTTCAAATGGGATTAGAGTTAGACGCTGGGCAATGTGCCAACGAGGACACTAGGCCCTCAAAGGGTAGATCGTGAGATCCCACATTGGTTGGAGAGAGGAAGAAACATTCCTTGTAAAGATGTGGAAATCTCTCCTTAGTAGACGCGTTTTAAAACTGTGAGGTTGATGAGCTTGGACTGTTACAAATGGCTTCTAGAACAGATTCGTTTCGTTGAATTTTGCTTGCTTTTACTGTTGAGATGCCTATGCACAGGGATTTCACGTTAATTATTGTATATTGTAGATCCATGTGAAAAGTAAAAGAAACAGGTATGATCGAATTTGATTGGATGTTTATGTGAGAAATCTCCC

Coding sequence (CDS)

ATGCCTCTTTTAGGAGTAACATCCGGACGGAGTCTAGACAACAAACTTGTTCTGGCCTGTTTTTCTTCTTTATACACATCCAATTTATGCATTCATGAGAAATATAGTCTATGGCTCTATGCGAAATGTGATCCTTTTCTAAAGAACACAAGTGATCCTGCAAGAGAGGTTCTGAAAGATGCGTGTCAGAACTTCATGGTGGTCTGCCACCATGTGAGGAACACATTCGACAAGGTTGTGCTTGATTTCAAACCCACCAATCCTGTGGGGAACATTAATATCAATTAG

Protein sequence

MPLLGVTSGRSLDNKLVLACFSSLYTSNLCIHEKYSLWLYAKCDPFLKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNININ
Homology
[Close]
BLAST of CmoCh13G000890 vs. ExPASy TrEMBL
Match: A0A6J1HYX9 (DNA-directed RNA polymerases I and III subunit RPAC2-like OS=Cucurbita maxima OX=3661 GN=LOC111469385 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.9e-18
Identity = 49/78 (62.82%), Postives = 55/78 (70.51%), Query Frame = 0 

Query: 30  CIHEKYSLWLYAKC------------DPFLKNTSDPAREVLKDACQNFMVVCHHVRNTFD 89
           C H +Y+L+    C            +  ++ T DPAREVLKDACQNFMVVCHHVRNTFD
Sbjct: 23  CDHGQYALYKVTFCGYNISHPSDDRVNIRVQTTCDPAREVLKDACQNFMVVCHHVRNTFD 82

Query: 90  KVVLDFKPTNPVGNININ 96
           K VLDFKPTNPVGNININ
Sbjct: 83  KAVLDFKPTNPVGNININ 100

[Close]
BLAST of CmoCh13G000890 vs. ExPASy TrEMBL
Match: A0A0A0LUT5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 47  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI 95
           ++ T DPAREVLKDACQN MVVC HVRNTFDK VLD K TNPV +INI
Sbjct: 56  VQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINI 103

[Close]
BLAST of CmoCh13G000890 vs. ExPASy TrEMBL
Match: A0A6J1D9Q8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3673 GN=LOC111018936 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.2e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 47  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI 95
           ++ T D AREVLKD+CQN MVVC HVRNTFDK VLDFK T PVG+INI
Sbjct: 56  VQTTGDSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINI 103

[Close]
BLAST of CmoCh13G000890 vs. ExPASy TrEMBL
Match: A0A6J1KDK3 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita maxima OX=3661 GN=LOC111493371 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 47  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI 95
           ++ T DPAREVLKDACQN M VC HVRNT DK VLD K T PVG+INI
Sbjct: 56  VQTTGDPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINI 103

[Close]
BLAST of CmoCh13G000890 vs. ExPASy TrEMBL
Match: A0A6J1G901 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita moschata OX=3662 GN=LOC111452057 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 47  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI 95
           ++ T DPAREVLKDACQN M VC HVRNT DK VLD K T PVG+INI
Sbjct: 56  VQTTGDPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINI 103

[Close]
BLAST of CmoCh13G000890 vs. NCBI nr
Match: XP_022970382.1 (DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita maxima])

HSP 1 Score: 100.5 bits (249), Expect = 8.1e-18
Identity = 49/78 (62.82%), Postives = 55/78 (70.51%), Query Frame = 0 

Query: 30  CIHEKYSLWLYAKC------------DPFLKNTSDPAREVLKDACQNFMVVCHHVRNTFD 89
           C H +Y+L+    C            +  ++ T DPAREVLKDACQNFMVVCHHVRNTFD
Sbjct: 23  CDHGQYALYKVTFCGYNISHPSDDRVNIRVQTTCDPAREVLKDACQNFMVVCHHVRNTFD 82

Query: 90  KVVLDFKPTNPVGNININ 96
           K VLDFKPTNPVGNININ
Sbjct: 83  KAVLDFKPTNPVGNININ 100

[Close]
BLAST of CmoCh13G000890 vs. NCBI nr
Match: XP_038893936.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 47  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI 95
           ++ T DPAREVLKDACQN MVVC HVRNTFDK VLD K T PVG+INI
Sbjct: 56  VQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTKPVGDINI 103

[Close]
BLAST of CmoCh13G000890 vs. NCBI nr
Match: XP_004147276.2 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >XP_011653666.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 5.1e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 47  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI 95
           ++ T DPAREVLKDACQN MVVC HVRNTFDK VLD K TNPV +INI
Sbjct: 56  VQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINI 103

[Close]
BLAST of CmoCh13G000890 vs. NCBI nr
Match: KAE8652742.1 (hypothetical protein Csa_014245 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 5.1e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 47  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI 95
           ++ T DPAREVLKDACQN MVVC HVRNTFDK VLD K TNPV +INI
Sbjct: 152 VQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINI 199

[Close]
BLAST of CmoCh13G000890 vs. NCBI nr
Match: XP_022150895.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 47  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI 95
           ++ T D AREVLKD+CQN MVVC HVRNTFDK VLDFK T PVG+INI
Sbjct: 56  VQTTGDSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINI 103

[Close]
BLAST of CmoCh13G000890 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 51.2 bits (121), Expect = 5.3e-07
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 47 LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFK 85
          ++ T DPAREV KDACQ  M +  HVR+ FDK V ++K
Sbjct: 56 VQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93

[Close]
BLAST of CmoCh13G000890 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 51.2 bits (121), Expect = 5.3e-07
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 47 LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFK 85
          ++ T DPAREV KDACQ  M +  HVR+ FDK V ++K
Sbjct: 56 VQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93

[Close]
BLAST of CmoCh13G000890 vs. TAIR 10
Match: AT2G29540.3 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 51.2 bits (121), Expect = 5.3e-07
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 47  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFK 85
           ++ T DPAREV KDACQ  M +  HVR+ FDK V ++K
Sbjct: 73  VQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 110

The following BLAST results are available for this feature:
BLAST of CmoCh13G000890 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G000890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HYX93.9e-1862.82DNA-directed RNA polymerases I and III subunit RPAC2-like OS=Cucurbita maxima OX... [more]
A0A0A0LUT52.5e-1277.08RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010... [more]
A0A6J1D9Q87.2e-1275.00DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3... [more]
A0A6J1KDK32.1e-1172.92DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita maxima OX=3661... [more]
A0A6J1G9012.1e-1172.92DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita moschata OX=36... [more]
BLAST of CmoCh13G000890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022970382.18.1e-1862.82DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita maxima][more]
XP_038893936.12.3e-1277.08DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida][more]
XP_004147276.25.1e-1277.08DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >XP_01165... [more]
KAE8652742.15.1e-1277.08hypothetical protein Csa_014245 [Cucumis sativus][more]
XP_022150895.11.5e-1175.00DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia][more]
BLAST of CmoCh13G000890 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G29540.15.3e-0755.26RNApolymerase 14 kDa subunit [more]
AT2G29540.25.3e-0755.26RNApolymerase 14 kDa subunit [more]
AT2G29540.35.3e-0755.26RNApolymerase 14 kDa subunit [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G000890.1CmoCh13G000890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005736 RNA polymerase I complex
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity