CmoCh13G000790 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G000790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Zinc finger CCCH domain-containing protein 40
Location	Cmo_Chr13: 484931 .. 485337 (+)
RNA-Seq Expression	CmoCh13G000790
Synteny	CmoCh13G000790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATTCTTCCCTTGGCTATGGCGGTCGTTGAGTTTGAAGGCTGAGTTACTGATTGGAGATTTCCGAAGACTTGATTGATTTCTTGAAAGTTCCTCTCAAGGTTGCGAGGACAGAGTTGGTTGGGCTCGACTAGATTTTTTCATGGCGCATCGGTTACTGAGGGATCTGGAAGCTGATGGCTGGGAGCGCTCTGATTTTCCCATCATCTGCGAGTCTTGCCTCGGCGATAACCCCTACGTTCGCATGGTATGTTCGTTCTTGCTTCTCCTATCTTATTTAGCGTTAGTACCTCTACCCCGCGAGCTCTTCGATCCCGTTTTTGAATTACGTTAAAAAAACCACAATTAATCACTCGAATGTTCGAATAATTCCTTTTCGAATTGTCATGTTCCTGAAAATACTCTAA

mRNA sequence

GCCATTCTTCCCTTGGCTATGGCGGTCGTTGAGTTTGAAGGCTGAGTTACTGATTGGAGATTTCCGAAGACTTGATTGATTTCTTGAAAGTTCCTCTCAAGGTTGCGAGGACAGAGTTGGTTGGGCTCGACTAGATTTTTTCATGGCGCATCGGTTACTGAGGGATCTGGAAGCTGATGGCTGGGAGCGCTCTGATTTTCCCATCATCTGCGAGTCTTGCCTCGGCGATAACCCCTACGTTCGCATGTACCTCTACCCCGCGAGCTCTTCGATCCCGTTTTTGAATTACGTTAAAAAAACCACAATTAATCACTCGAATGTTCGAATAATTCCTTTTCGAATTGTCATGTTCCTGAAAATACTCTAA

Coding sequence (CDS)

ATGGCGCATCGGTTACTGAGGGATCTGGAAGCTGATGGCTGGGAGCGCTCTGATTTTCCCATCATCTGCGAGTCTTGCCTCGGCGATAACCCCTACGTTCGCATGTACCTCTACCCCGCGAGCTCTTCGATCCCGTTTTTGAATTACGTTAAAAAAACCACAATTAATCACTCGAATGTTCGAATAATTCCTTTTCGAATTGTCATGTTCCTGAAAATACTCTAA

Protein sequence

MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMYLYPASSSIPFLNYVKKTTINHSNVRIIPFRIVMFLKIL

Homology

[Close]

BLAST of CmoCh13G000790 vs. ExPASy Swiss-Prot
Match: Q5SNN4 (Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0170500 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHRLLRD +ADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. ExPASy Swiss-Prot
Match: Q6Z358 (Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0281000 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHRLLRD +ADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. ExPASy Swiss-Prot
Match: Q9ZW36 (Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=At2g29580 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHR+LRD EADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRILRDHEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. ExPASy Swiss-Prot
Match: Q9LNV5 (Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=At1g07360 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHR+LRD EADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRILRDHEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. ExPASy Swiss-Prot
Match: Q9FL40 (Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis thaliana OX=3702 GN=At5g07060 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 7  RDLEADGWERSDFPIICESCLGDNPYVRM 36
          RD  ADGWE +DFPI CESC GDNPY+RM
Sbjct: 4  RDHGADGWESADFPITCESCFGDNPYMRM 32

[Close]

BLAST of CmoCh13G000790 vs. ExPASy TrEMBL
Match: A0A6J1K970 (zinc finger CCCH domain-containing protein 40-like OS=Cucurbita maxima OX=3661 GN=LOC111492819 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. ExPASy TrEMBL
Match: A0A1S3BU98 (zinc finger CCCH domain-containing protein 40-like OS=Cucumis melo OX=3656 GN=LOC103493581 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. ExPASy TrEMBL
Match: A0A251LWM2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G122600 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. ExPASy TrEMBL
Match: A0A5A7UP80 (Zinc finger CCCH domain-containing protein 40-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00280 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. ExPASy TrEMBL
Match: A0A2P5AW11 (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294980 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. NCBI nr
Match: XP_002280897.1 (PREDICTED: zinc finger CCCH domain-containing protein 49 [Vitis vinifera])

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. NCBI nr
Match: XP_022964742.1 (zinc finger CCCH domain-containing protein 40-like [Cucurbita moschata])

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. NCBI nr
Match: XP_018837602.1 (zinc finger CCCH domain-containing protein 40-like [Juglans regia])

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. NCBI nr
Match: XP_021682476.1 (zinc finger CCCH domain-containing protein 40-like [Hevea brasiliensis])

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. NCBI nr
Match: XP_034688404.1 (zinc finger CCCH domain-containing protein 49 [Vitis riparia])

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. TAIR 10
Match: AT1G07360.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain )

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-15
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHR+LRD EADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRILRDHEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. TAIR 10
Match: AT2G29580.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain )

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-15
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRM 36
          MAHR+LRD EADGWERSDFPIICESCLGDNPYVRM
Sbjct: 1  MAHRILRDHEADGWERSDFPIICESCLGDNPYVRM 35

[Close]

BLAST of CmoCh13G000790 vs. TAIR 10
Match: AT5G07060.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain )

HSP 1 Score: 56.6 bits (135), Expect = 9.7e-09
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 7  RDLEADGWERSDFPIICESCLGDNPYVRM 36
          RD  ADGWE +DFPI CESC GDNPY+RM
Sbjct: 4  RDHGADGWESADFPITCESCFGDNPYMRM 32

[Close]

BLAST of CmoCh13G000790 vs. TAIR 10
Match: AT5G07060.2 (CCCH-type zinc fingerfamily protein with RNA-binding domain )

HSP 1 Score: 56.6 bits (135), Expect = 9.7e-09
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 7  RDLEADGWERSDFPIICESCLGDNPYVRM 36
          RD  ADGWE +DFPI CESC GDNPY+RM
Sbjct: 4  RDHGADGWESADFPITCESCFGDNPYMRM 32

The following BLAST results are available for this feature:

BLAST of CmoCh13G000790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5SNN4	2.0e-14	94.29	Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica OX...	[more]
Q6Z358	2.0e-14	94.29	Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica OX...	[more]
Q9ZW36	2.6e-14	94.29	Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LNV5	2.6e-14	94.29	Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9FL40	1.4e-07	75.86	Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CmoCh13G000790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K970	8.6e-13	100.00	zinc finger CCCH domain-containing protein 40-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A1S3BU98	8.6e-13	100.00	zinc finger CCCH domain-containing protein 40-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A251LWM2	8.6e-13	100.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G122600 PE=4 SV=...	[more]
A0A5A7UP80	8.6e-13	100.00	Zinc finger CCCH domain-containing protein 40-like OS=Cucumis melo var. makuwa O...	[more]
A0A2P5AW11	8.6e-13	100.00	Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_2949...	[more]

BLAST of CmoCh13G000790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_002280897.1	1.8e-12	100.00	PREDICTED: zinc finger CCCH domain-containing protein 49 [Vitis vinifera]	[more]
XP_022964742.1	1.8e-12	100.00	zinc finger CCCH domain-containing protein 40-like [Cucurbita moschata]	[more]
XP_018837602.1	1.8e-12	100.00	zinc finger CCCH domain-containing protein 40-like [Juglans regia]	[more]
XP_021682476.1	1.8e-12	100.00	zinc finger CCCH domain-containing protein 40-like [Hevea brasiliensis]	[more]
XP_034688404.1	1.8e-12	100.00	zinc finger CCCH domain-containing protein 49 [Vitis riparia]	[more]

BLAST of CmoCh13G000790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07360.1	1.8e-15	94.29	CCCH-type zinc fingerfamily protein with RNA-binding domain	[more]
AT2G29580.1	1.8e-15	94.29	CCCH-type zinc fingerfamily protein with RNA-binding domain	[more]
AT5G07060.1	9.7e-09	75.86	CCCH-type zinc fingerfamily protein with RNA-binding domain	[more]
AT5G07060.2	9.7e-09	75.86	CCCH-type zinc fingerfamily protein with RNA-binding domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14089:SF13	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE	coord: 1..35
IPR039171	Pre-mRNA-splicing factor Cwc2/Slt11	PANTHER	PTHR14089	PRE-MRNA-SPLICING FACTOR RBM22	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G000790.1	CmoCh13G000790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000974	Prp19 complex
cellular_component	GO:0071006	U2-type catalytic step 1 spliceosome
cellular_component	GO:0071007	U2-type catalytic step 2 spliceosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0036002	pre-mRNA binding
molecular_function	GO:0017070	U6 snRNA binding
molecular_function	GO:0003723	RNA binding