CmoCh13G000570 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G000570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	nudC domain-containing protein 2-like
Location	Cmo_Chr13: 341634 .. 347278 (-)
RNA-Seq Expression	CmoCh13G000570
Synteny	CmoCh13G000570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGACCGGAACTTCTCGTTGGAGAAAAAGGAAGGCACTGGGAAAAGAAAAGCTTCTGTGAAATTCGCGGGAAAGGGGAGAAGCAAGCCCTAAGAAATGGCGGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTTTTCTCTCTACTCTTATCGATTGGATCTTCTGATTTTTCAATTTGAACGAATGAATTCAATGTTGTATGAGTCTTTTGATCTCTGTGCTCGCTTGGTTGTGGTTTTTCAGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGCAATCCTCCTTATCTCAATGTCGGTATCGTTGCATCTTGAAGGATTTAATTTTGAAATTTTGATCTATTGCTTCGTTTATGATTGTACCAATTGCTTTCAATCATTGATTTGCAGCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGGTGATTGCAAATGCTCACTTGAATGACTAAATGGAATCTTGATTGTTATACTTATACACCAAATAAATTTCATGGGACTGAGTTTTGGTGTCTCTTTTTTATCTTCCCCTTTTAATTGCTCCACTTTTGTCTATTTTGTAGTGTAATTGTTTTGGTTATTTTGGGTGGCAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTAGAGCAGAAGCGCCTTATGCTCCAGAGGTTTCAAGAGGAGGTCTGTTTTTTTTTTACTCCAGACTTTTGATGTATTCTAGATAATATGCTTATGCTTTTGTGTTTTCCATGTTTGTTTTGATTTATGTACTTTTTGTTTCCCTTCTTGAGCATGTTTAGTGTTTTTATTCGAAGATCGATTGTTTCAATTATCCCAATAGATTTTTCATCCTACGAGGCTAGGTTTTAGTTGTTGGTGCTCATGGTTAGGAGGTTTATTTTATTGAGTAAATAGTTAGTGAGATGTTCTGATAACTTCTCGATGTTGATTTCTGGGACGAAGCTAATTTGCCTTGTCATAATTATGAGACAGATGGAGAGGCTAACCTGTCTGGAAAATCATATTCACGTTGTTGGCCTGATAAGAAGAATTGGAAAGCTTTCTATAAAATGTTAATGATTTGACAGTTTTGCAGTATAGGCTTGGTGGACTGAGTTGCTGTGTGTGAGCTGCAGTTCCAGAGGTCGTTAAGAATGTAGCACAACTTATGAGAATCCCTGCGTCCTCCTCCTCCTATCCTTCAGAAAAACTTCTTCTCTGAACTCAAACATGAGATCTCCAACTTTTATCTTAACTAATGTAGGGTAGCTGAAACATTCTTCCAAAGTTTGCTTCGGATAAGAGAGGGCCTGGACTAATCTATACATCACTAAGGACCATTGAGAGCATACTCTGCAAGTGTTCTTTTGTTTTTTTTTTCTTTTTTTCAAGCCCATATCATTTGAGACATCTCTAAAAACTTATTCAGGGGCACTGCACCCAACAATTGTGAGAAAAAAACTCCCAACTCAATAGACTAACTTTATGTTCGAGTGATACATTATCTCCTTTCCTTTAGATAGAGGTCTCCTTCAAGGCACTCATGGGATGACTTGAACCTTTGACGTGCTCTTGTACCAACTGATGTAGGATAGATGACCTGATTTTTCCACTGTAGAAGCTGATATGAGAGAGGTCAATTATGTCTTTACCTCATCCACAACCCAGCTCAAGAGTTCACCCTGTAAGGCTACTCCATTTTGAGCCTATCTTTGGAGACAACCTATAGAACCCAATGGAGTGGAAAGAAAGGCTCCCATAACTCTATACTGAGTTTAAGGGATGGTTTGCATCACTCGTATTTTTAAGCTTTTAGTTTTATTTTGGATGGAATAGGAATAACTATTGGGTTGCATTCAACCTTTGCATATGACGTTTCTTGTCTGATTCTGGTTTAGTAACTACAAACGTTGTCTACTCTGAATATCAAGTCAACTCACACGGTGAAAGGTAGTTCATTAATTATGGATGAGAGAGTTGTTGGATTATTGTTAATTACTAAAATTTTATTAGGTGCTGGTTTTATATATCGGTTTTATATATCCCGAATCGGCAGTGTTGTTATGTCTTTGTATGGCCTACTATTGTAAAGTTATGATATCTTATAAATACACAAACACATTTCTTTTCCTACAAGATGTCAGAAGTCCTGAATCAAGTGTCAGTTATGTTGTGAAATCTTGAAACTTAATCTGTATTACTTATTTCTCTGCAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGACGAAGATAGTTTTGCATTTATAACTTGCAAGGGCGTGACATTTTGCTAATGCTCGGTAAATAATGTGTAGATTTTCTACCGGTCTTGATTTATGCAATCCATATAATGACTGCTATTGGGAAAATGATGTGTACTGGGTTTTCATGTAATCGCTGCAATGAACTGAAAATATTTATGTGATATAAATTTAACTTCCAAATATTTTGTATTATAGTTTAACCTTCTATTTGGTTTGATATAAACCAGAGTTCCAAATTTGATCGCAGATGCAAGTTCATGGTAAAAATAGCGAACCTGGTACCATCATTCTCTATATATTTGTTTATCCAAATCCTATTCAGTAAAATATGTTGAAAAGGGACCTTGTTAGTTTAAGTTCCCCCCTGGCCAACCAAATTTTGTTCCAAGTATGATGAGATCCTGTTTAGAGTCCTAGTTCATGCATAACAGCTCATGTTGAATGCCCAAAGTGAGTGGATGATAACATTATTCTGCTGTGGACTATCTTCTTGGTGTTGGCTGCCAGAACCTTTAGTAAAATGAAGGGTACTCCTTTTCCGGTTGCCTTTTCTTACGGTTCCTCCAATTCTTTAAGCAATAATTTAAAAAGCATGGGAATTAGAAAAGGGAAATGCTGCGGCGACGGTTGTGAATGCAGTTGTTGGAATCCCTCAAAAGTGCTGATTTAAATTTAAGGTAGTATCAGATTCCTAACCCAACCATTCGATCAGAGACGTTTATTGATGTTTTGCCTTTTTTGCTTTGTGCTTTCAGATATTCCTAACCTAACCATTCTGTCAGTGCCATTCATTGATATTTTGTCTTTTTTGCCTTGTGCTTTCAGATTCCCACCTCTCAAAGGACGGACAACTACTCCACGGGTATGCAATTTCTGATCCTTTTCTCTCTAGTGTTCTAAACTCTAAAGCAGAAGAAAGCCACTTTACGGGTTGAAGACTTCAACTCGTGAGGTTCTGTGCGTATCTTCTTACTTTTGAGAGTTCCTGATAGTATTTTAAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACAGCCCAAGCCCACCCTATCTTCTTACTTTTGCCTCGTGTCCACCCCCTTTCGGGGCTCAGCCTCCTCGCTGGCACATTGCCTCGAACTTGACTTTAATACCATTTGTAATAGCTCAAGCCCACCACTAGCAAATATTGTCATCTTTGGGCTTCCCGTTTTGGTTTTTCCCTTAAGGTTTTAAAAACGTGTCGGCTAGGTAAAGGTTTCTATACCTTTATAAAAAATGTTTTTGTTCTCCTCCCCAATATCTGGGATCTCATGTTTTTGGACTGTTGAGCTTGTTCACGGAGTGAATTTTATTGATACAAAATTTTGATTGAAAATATGAAAAGAGACTAATGTTGAGAGATGGAAGAAGGTGAGGGTGAAGGAAGCAAGATACATAAAAACAGTAATTAACTACTAAAACATTACAAAGCTATACAATAACGTTCCAAGTAAGACAAATATCTTGAAGGGAAAACCCATCAAAAGCCTTGGAGTGAGAACACCCAGAAACGAGTTGAATCAATTCTGTTCAATCATACTCGGGTGCGTGGTATCTGCAGATGGCTTCACTTAAGTACCATCAACTGATTAGCAGTACATTTTGTTTCCTATATTGATTCTCCCTATATCATTTCCTTTTCCCCTTGGACCATTTTGGTATCTTTTTTTGCTACCCTTAAGCGTCGCTATCTCTCTCATACGTTGTGTCGTCATTCTTAAAATCTAATTCCACCCTTGGACTTGCAGTTTGTCCAAAGCCAAATCGCCTCTGCCAACCATGTTGGAAGTTAGTGAAAAATAGGACAAAGGGGTGGCCCTCTTTTGTTTGTTTTGGGTTAAGATAAAGACTATATGTCTGAATTGAGATTTTAAATGATTTTAGATGGTCCTTGGGGAATTGCACTAAGCGCTAAGGCGTTAGACAGAGAGAAAATACCCAAGTAGGTGTCTCCTTTAAATCGTTTTAGGATCTTTTTAATTGTTGTCCTAATTTTATAAGTTTGGCAATGTATTAATTACTTTGGTAAGAAGTTTAGTGGTCTATTAGATTTTTTTTTTTTTTTTTTACTACCATAAGTAGAAATGTGGCTTTAAATTACGATCTTAAAAGGAAGATTTATGTTAACTACCGGGCATTTATTGAACTTAATCTTGATAATTTTGGGACTAAAATTATCATTTTCATATTTGTGTTTTGACTATGTGGAACTATTTTCATAAGTTATGAATCAAAGTTAAAATTTAGGGACTATAGAACCAATCTTTTTAGTTTTAGCATATTTTGGGTGAAGGTACACAAACCTATTGACAATTTAGTTTAATTTTCATGCACTTTGGATCATTGAGTTGGATGGAGTCGTGTTTTTTTTTTTTTTAACTCAACTCTATGTGTTGAGTTTTTAACCCTTGATTTATTTGCTTTGACAGAGGGAAGTTTAACAAGATCGAACCCCACCAACTTCAACAATGTTCACTATTTAAATTTTACCAACTTCAAAAGCTTTTAATATTTAAGATACTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT

mRNA sequence

CTAGACCGGAACTTCTCGTTGGAGAAAAAGGAAGGCACTGGGAAAAGAAAAGCTTCTGTGAAATTCGCGGGAAAGGGGAGAAGCAAGCCCTAAGAAATGGCGGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGCAATCCTCCTTATCTCAATCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTAGAGCAGAAGCGCCTTATGCTCCAGAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGATTTTCTACCGGTCTTGATTTATGCAATCCATATAATGACTGCTATTGGGAAAATGATGTGTACTGGGTTTTCATATATTCCTAACCTAACCATTCTGTCAGTGCCATTCATTGATATTTTGTCTTTTTTGCCTTGTGCTTTCAGATTCCCACCTCTCAAAGGACGGACAACTACTCCACGGAGGGAAGTTTAACAAGATCGAACCCCACCAACTTCAACAATGTTCACTATTTAAATTTTACCAACTTCAAAAGCTTTTAATATTTAAGATACTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT

Coding sequence (CDS)

ATGGCGGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGCAATCCTCCTTATCTCAATCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTAGAGCAGAAGCGCCTTATGCTCCAGAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGATTTTCTACCGGTCTTGATTTATGCAATCCATATAATGACTGCTATTGGGAAAATGATGTGTACTGGGTTTTCATATATTCCTAACCTAACCATTCTGTCAGTGCCATTCATTGATATTTTGTCTTTTTTGCCTTGTGCTTTCAGATTCCCACCTCTCAAAGGACGGACAACTACTCCACGGAGGGAAGTTTAA

Protein sequence

MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLDFLPVLIYAIHIMTAIGKMMCTGFSYIPNLTILSVPFIDILSFLPCAFRFPPLKGRTTTPRREV

Homology

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BLAST of CmoCh13G000570 vs. ExPASy Swiss-Prot
Match: Q8WVJ2 (NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-20
Identity = 55/140 (39.29%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNH 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QS HV + + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSV-GGREILKG 65

Query: 68  HLTCPVKTDSSFWTLEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLML 127
            L      D   WTLED  M    +T  KRD    W S ++ +   DP+  D  Q++L L
Sbjct: 66  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 125

Query: 128 QRFQEENPGFDFSQAQFSGN 145
           +RFQ+ENPGFDFS A+ SGN
Sbjct: 126 ERFQKENPGFDFSGAEISGN 144

[Close]

BLAST of CmoCh13G000570 vs. ExPASy Swiss-Prot
Match: Q9CQ48 (NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-20
Identity = 55/140 (39.29%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNH 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QS HV + + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAV-GGREILKG 65

Query: 68  HLTCPVKTDSSFWTLEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLML 127
            L      D   WTLED  M    +T  KRD    W S ++ +   DP+  D  Q++L L
Sbjct: 66  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 125

Query: 128 QRFQEENPGFDFSQAQFSGN 145
           +RFQ+ENPGFDFS A+ SGN
Sbjct: 126 ERFQKENPGFDFSGAEISGN 144

[Close]

BLAST of CmoCh13G000570 vs. ExPASy Swiss-Prot
Match: Q5M823 (NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.5e-20
Identity = 52/126 (41.27%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 22  EWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFWT 81
           +W QTLEEV I + +PP   ++   C +QS HV + + G    L   L      D   WT
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAV-GGREILKGKLFDSTIADEGTWT 79

Query: 82  LEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQ 141
           LED  M    +T  KRD    W S ++ +   DP+  D  Q++L L+RFQ+ENPGFDFS 
Sbjct: 80  LEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSG 139

Query: 142 AQFSGN 145
           A+ SGN
Sbjct: 140 AEISGN 144

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BLAST of CmoCh13G000570 vs. ExPASy Swiss-Prot
Match: Q9STN7 (Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-13
Identity = 45/158 (28.48%), Postives = 74/158 (46.84%), Query Frame = 0


Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFW 80
           + W Q L+EV I I +P    S+   C+I+   ++VG+KG    ++      VK D  FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  TLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPYT---------- 140
            +ED  ++ + L K+D+ + W   ++G+               G LDP T          
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255

Query: 141 ----------TDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                     +D  +K+ ML++F  +NPG DFS A+F+
Sbjct: 256 QRQKQMGLPRSDEIEKKDMLKKFMAQNPGMDFSNAKFN 293

[Close]

BLAST of CmoCh13G000570 vs. ExPASy Swiss-Prot
Match: Q9Y266 (Nuclear migration protein nudC OS=Homo sapiens OX=9606 GN=NUDC PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-08
Identity = 39/160 (24.38%), Postives = 73/160 (45.62%), Query Frame = 0


Query: 21  FEWDQTLEEVNIYINLPPN--VHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSS 80
           + W QTL E+++ +    N  +  K     IQ  H+ VG+KG P  ++  L   VK + S
Sbjct: 172 YRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEES 231

Query: 81  FWTLED-DIMHITLQKRDKGQTWASPI--------------------------------- 140
            W +ED  ++ + L+K +K + W+  +                                 
Sbjct: 232 SWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMM 291

Query: 141 --QGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQAQFS 143
             Q Q  +   T+D ++K+ +L++F +++P  DFS+A+F+
Sbjct: 292 YDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 331

[Close]

BLAST of CmoCh13G000570 vs. ExPASy TrEMBL
Match: A0A6J1I2V0 (nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111469416 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.8e-90
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRL 158
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRL
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRL 157

[Close]

BLAST of CmoCh13G000570 vs. ExPASy TrEMBL
Match: A0A6J1HPE6 (nudC domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111464843 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.8e-90
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRL 158
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRL
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRL 157

[Close]

BLAST of CmoCh13G000570 vs. ExPASy TrEMBL
Match: A0A5A7SMF6 (NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00610 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 1.0e-85
Identity = 150/156 (96.15%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CmoCh13G000570 vs. ExPASy TrEMBL
Match: A0A1S3C618 (nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 1.0e-85
Identity = 150/156 (96.15%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CmoCh13G000570 vs. ExPASy TrEMBL
Match: A0A0A0LV57 (CS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G530660 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.6e-85
Identity = 148/156 (94.87%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CmoCh13G000570 vs. NCBI nr
Match: XP_022964859.1 (nudC domain-containing protein 2-like [Cucurbita moschata] >XP_022970435.1 nudC domain-containing protein 2-like [Cucurbita maxima] >XP_023518977.1 nudC domain-containing protein 2-like [Cucurbita pepo subsp. pepo] >KAG6583365.1 NudC domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340.1 bits (871), Expect = 1.4e-89
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRL 158
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRL
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRL 157

[Close]

BLAST of CmoCh13G000570 vs. NCBI nr
Match: XP_038894388.1 (nudC domain-containing protein 2 [Benincasa hispida])

HSP 1 Score: 329.3 bits (843), Expect = 2.5e-86
Identity = 151/157 (96.18%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLE+VNIYINLPPNVHSKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEDVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPP+LNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY+TDLEQK
Sbjct: 61  NPPFLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRL 158
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIRL
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIRL 157

[Close]

BLAST of CmoCh13G000570 vs. NCBI nr
Match: XP_008457374.1 (PREDICTED: nudC domain-containing protein 2 [Cucumis melo] >KAA0031818.1 nudC domain-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 326.2 bits (835), Expect = 2.1e-85
Identity = 150/156 (96.15%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CmoCh13G000570 vs. NCBI nr
Match: XP_019418021.1 (PREDICTED: nudC domain-containing protein 2 [Lupinus angustifolius])

HSP 1 Score: 323.9 bits (829), Expect = 1.0e-84
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTL+EVN+YINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLDEVNMYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIVGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLD 159
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR D
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIRSD 158

[Close]

BLAST of CmoCh13G000570 vs. NCBI nr
Match: KAG6607306.1 (NudC domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323.6 bits (828), Expect = 1.4e-84
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVN+YINLPPNVHSKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNMYINLPPNVHSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLED IMHITLQKRDKGQTWASPIQGQGQLDPY+TDLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDGIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLD 159
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGI  D
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIHSD 158

[Close]

BLAST of CmoCh13G000570 vs. TAIR 10
Match: AT5G58740.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 309.3 bits (791), Expect = 2.5e-84
Identity = 141/158 (89.24%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRH F+HNGQKVFEWDQTLEEVN+YI LPPNVH K F+CKIQS H+EVGIKG
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH L+ PVKTD SFWTLEDDIMHITLQKR+KGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLD 159
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR D
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRSD 158

[Close]

BLAST of CmoCh13G000570 vs. TAIR 10
Match: AT4G27890.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-14
Identity = 45/158 (28.48%), Postives = 74/158 (46.84%), Query Frame = 0


Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFW 80
           + W Q L+EV I I +P    S+   C+I+   ++VG+KG    ++      VK D  FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  TLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPYT---------- 140
            +ED  ++ + L K+D+ + W   ++G+               G LDP T          
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255

Query: 141 ----------TDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                     +D  +K+ ML++F  +NPG DFS A+F+
Sbjct: 256 QRQKQMGLPRSDEIEKKDMLKKFMAQNPGMDFSNAKFN 293

The following BLAST results are available for this feature:

BLAST of CmoCh13G000570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WVJ2	2.5e-20	39.29	NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1	[more]
Q9CQ48	2.5e-20	39.29	NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1	[more]
Q5M823	5.5e-20	41.27	NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV...	[more]
Q9STN7	3.8e-13	28.48	Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1	[more]
Q9Y266	2.8e-08	24.38	Nuclear migration protein nudC OS=Homo sapiens OX=9606 GN=NUDC PE=1 SV=1	[more]

BLAST of CmoCh13G000570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I2V0	6.8e-90	100.00	nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC11146941...	[more]
A0A6J1HPE6	6.8e-90	100.00	nudC domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111464...	[more]
A0A5A7SMF6	1.0e-85	96.15	NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3C618	1.0e-85	96.15	nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV...	[more]
A0A0A0LV57	6.6e-85	94.87	CS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G530660 PE=4 SV=...	[more]

BLAST of CmoCh13G000570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964859.1	1.4e-89	100.00	nudC domain-containing protein 2-like [Cucurbita moschata] >XP_022970435.1 nudC ...	[more]
XP_038894388.1	2.5e-86	96.18	nudC domain-containing protein 2 [Benincasa hispida]	[more]
XP_008457374.1	2.1e-85	96.15	PREDICTED: nudC domain-containing protein 2 [Cucumis melo] >KAA0031818.1 nudC do...	[more]
XP_019418021.1	1.0e-84	93.67	PREDICTED: nudC domain-containing protein 2 [Lupinus angustifolius]	[more]
KAG6607306.1	1.4e-84	93.67	NudC domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of CmoCh13G000570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58740.1	2.5e-84	89.24	HSP20-like chaperones superfamily protein	[more]
AT4G27890.1	2.7e-14	28.48	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 16..102 e-value: 1.8E-21 score: 78.5
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 9..115
IPR007052	CS domain	PFAM	PF04969	CS	coord: 21..93 e-value: 3.6E-16 score: 60.0
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 16..104 score: 15.842836
None	No IPR available	GENE3D	1.20.5.740	Single helix bin	coord: 103..131 e-value: 3.6E-7 score: 31.9
None	No IPR available	PANTHER	PTHR12356:SF18	HSP20-LIKE CHAPERONES SUPERFAMILY PROTEIN	coord: 2..148
None	No IPR available	CDD	cd06467	p23_NUDC_like	coord: 21..104 e-value: 2.84544E-34 score: 115.723
IPR037898	NudC family	PANTHER	PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	coord: 2..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G000570.1	CmoCh13G000570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0051082	unfolded protein binding