CmoCh13G000520 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G000520
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr13: 313411 .. 315267 (-)
RNA-Seq ExpressionCmoCh13G000520
SyntenyCmoCh13G000520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCACTCACAACCCATTTAGCCCACTTCACAATTTCCTTCCCAGTTGAATGATGTTCAGCAATGGCGCCGCCTCCGTCTCTTGCTGTAATGGCGACTGGCGATGAATCAAGGTTTGTGCGCGAGTCCCTGTTTTCTTCAATTCAATCGATCATACTTTCTGGTCGAAATGAAATGGTTGAGTTTCTTTTGTGGTTAATTTGATCTCTTGATTTGACTTTGCAGCCAAATGCGACTTTAGCAGAAATTGTGCCATTGATCCAGAACGAAATGAGGAGCAATATCCCCCACAGGTCATTCGGCTTCTGTTCATTCATTCCAAAATCCTGTAATTGATTTCCTTACAATATCTTGCCCTAAATATTTATCTGAAATTTCCTTGGATACGTAGCATTGTTGGTTAAATTAAGTTAGGGCAATCTCTGCCTGTTCTATTATGGAAACTTGGAAGGATTAATTTGAAGCGACTTCTGTAATATTGTCAGCTTATTTAAATATCTGCTGTATTTTCGATTGATTCATTTTACCTTGAAATCTGCTTTGATATTGTGAAAGAATAGCTATAGTTAATGATCTAAGTGATTTGAGGAATTTGGACCCTCCCTTTCTTGAGATCACTCGAGCTCTAAACCAACTAAATCAATGCCTTACTAACCTTCTTTCCCACTCTCTCTATCTATAACCAAAATCCCTAGATTCCTTCTAATTCATTGTTGGGTAGGCAAAAGAATAGCAATTGTTCTGTTCTGTGTTCCTTTTTCATTCACGTTTGTGGGGCTGAGGGAGGAAAGAGACAGATTATAGCTATCAATTGAATGTGTTGCCTTGAAGACAAATAGCTATCCGTTTGCTGCTCTTCTCATTTGCTAAATATGTTTCTCCTTTTCTGGTCCTCGACCGGGATTGACTCGACTTAACTCGACTCGACTCTTTTGAGCAAATATTTTATTGACTGTGCTTGTTCTCTTCATGTGCAAAACCTGATACGATGTGAGATCCTACATTAGTTGGAGAAAAGAACGAAACATTCCTTATAAGGGTGTGGAAACCCCTCCCTATTTTAAAACCTTGAAGGGAAACCCATAAGGAAAAATCCAAAGAGGACAATATCTGCTAGCGGTGTGTGTAGGTTGTTACAAATGGTATCAGCCAAATACCGAACAATGTGCTAGCAAGGACGCTGAGCCTCGAAAGGGGTGGATTGTGAGATCCCACGTTGGTTGGGGAGGAGAACGAAACATTCATTATAAAGATGTGAAAATCTCTCCCTATCAAATGCCTTTTAAAATCTTAAGGGGAAGCCCATAAAGAAAAACCAGAGAGGACAATATCTACTACATATGTGAATATGTGGCTTTGTTTTTTATTTTCTTTATTCTTTTCTGAGGATATGTGAATGAAAATGATACTACGTTGAATACAGAATAGAAGAAGTAGATAAAACGTTCACATATAGAAGAAATGTGATGCAGGGAAACACGAGGGACCAAAACGTGATCCTCTCGTGCTCGTGTAGCCAATCAAGTGAGAAGAAAAATGAAGTGGATATACTCAAAGGAGGTTCTGTTCTGCTGATTTGGGTATTTGAATTCATTGGCACTACTTTCTCCACTTCTAACAGGTGAGTCTCTTTGTTGTTTGGAAGTGTAGGATTGATCAACACAATTGCTTCTTCCTCACCTTCTGTTCATCATTTTGCAGTTTGCAAACACAGAGCTCTAGTTTTGATCTGATTTGATTGCATTTGTCGGGTTTGTCACGGATCTTTCAGGTTTGTTTGCAAATAAGTCCTTAAACTTTTCAAACTTTCTAATAAGTCCTTCAACCTTATTACTAAATTGTCCTCTTGAATTTTTTTT

mRNA sequence

TTCACTCACAACCCATTTAGCCCACTTCACAATTTCCTTCCCAGTTGAATGATGTTCAGCAATGGCGCCGCCTCCGTCTCTTGCTGTAATGGCGACTGGCGATGAATCAAGCCAAATGCGACTTTAGCAGAAATTGTGCCATTGATCCAGAACGAAATGAGGAGCAATATCCCCCACAGGGAAACACGAGGGACCAAAACGTGATCCTCTCGTGCTCGTGTAGCCAATCAAGTGAGAAGAAAAATGAAGTGGATATACTCAAAGGAGGTTCTGTTCTGCTGATTTGGGTATTTGAATTCATTGGCACTACTTTCTCCACTTCTAACAGTTTGCAAACACAGAGCTCTAGTTTTGATCTGATTTGATTGCATTTGTCGGGTTTGTCACGGATCTTTCAGGTTTGTTTGCAAATAAGTCCTTAAACTTTTCAAACTTTCTAATAAGTCCTTCAACCTTATTACTAAATTGTCCTCTTGAATTTTTTTT

Coding sequence (CDS)

ATGAATCAAGCCAAATGCGACTTTAGCAGAAATTGTGCCATTGATCCAGAACGAAATGAGGAGCAATATCCCCCACAGGGAAACACGAGGGACCAAAACGTGATCCTCTCGTGCTCGTGTAGCCAATCAAGTGAGAAGAAAAATGAAGTGGATATACTCAAAGGAGGTTCTGTTCTGCTGATTTGGGTATTTGAATTCATTGGCACTACTTTCTCCACTTCTAACAGTTTGCAAACACAGAGCTCTAGTTTTGATCTGATTTGA

Protein sequence

MNQAKCDFSRNCAIDPERNEEQYPPQGNTRDQNVILSCSCSQSSEKKNEVDILKGGSVLLIWVFEFIGTTFSTSNSLQTQSSSFDLI
Homology
[Close]
BLAST of CmoCh13G000520 vs. NCBI nr
Match: KAG6583359.1 (hypothetical protein SDJN03_19291, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.5 bits (415), Expect = 4.2e-37
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 1  MNQAKCDFSRNCAIDPERNEEQYPPQGNTRDQNVILSCSCSQSSEKKNEVDILKGGSVLL 60
          MNQAKCDFSRNCAIDPERN EQYP QGNTRDQ+VILSCSC+QSSEKKNEVD+LKGGSVLL
Sbjct: 1  MNQAKCDFSRNCAIDPERNVEQYPQQGNTRDQHVILSCSCTQSSEKKNEVDVLKGGSVLL 60

Query: 61 IWVFEFIGTTFSTSNSLQTQSSSFDLI 88
          IWVFEFIGTTFST NS QTQSSSFDLI
Sbjct: 61 IWVFEFIGTTFSTFNSFQTQSSSFDLI 87

[Close]
BLAST of CmoCh13G000520 vs. NCBI nr
Match: KAG7019130.1 (hypothetical protein SDJN02_18088 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 4.1e-32
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 0 

Query: 7  DFSRNCAIDPERNEEQYPPQGNTRDQNVILSCSCSQSSEKKNEVDILKGGSVLLIWVFEF 66
          D SRNCAIDPERN EQYP QGNTRDQ+VILSCSC+QSSEKKNEVD+LKGGSVLLIWVFEF
Sbjct: 14 DESRNCAIDPERNVEQYPQQGNTRDQHVILSCSCTQSSEKKNEVDVLKGGSVLLIWVFEF 73

Query: 67 IGTTFSTSNSLQTQSSSFDLI 88
          IGTTFST NS QTQSSSFDLI
Sbjct: 74 IGTTFSTFNSFQTQSSSFDLI 94

The following BLAST results are available for this feature:
BLAST of CmoCh13G000520 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G000520 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G000520 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583359.14.2e-3791.95hypothetical protein SDJN03_19291, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7019130.14.1e-3290.12hypothetical protein SDJN02_18088 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmoCh13G000520 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G000520.1CmoCh13G000520.1mRNA