CmoCh13G000140 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G000140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr13: 157383 .. 158902 (-)
RNA-Seq ExpressionCmoCh13G000140
SyntenyCmoCh13G000140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCGGCTTCTGTTTTCCAATTTCCAGTACTACCACAGGTATGCTTATATTGTTTTTATTTTGAAAAGAAACTAATTAAAATTAAGAATGTAATATAAACAGAAAAAGGAATCTTTACAAAAGCTTTGTTTGGTCAAGGATTTAGATTATGCCCCAATTTGGATATCAGAGGAAATAAGAGTTTTAAGGAGTTAGCTGTCTTAACGTTGTAAAATCTCATAAAATAAAGAAGGCGGTATTGACTTAATGATACTAGATGAACTAGACTTGTTAATTAGAGGGACCCAACAAACTTTGGAGAGTCTTCAGGTCTGGATTCCTACAAACTAGTTAAAGGCGTCTGAAATTTCTCCTGTACGCTCCTAGTATGAGAACTCCTAGTATGAGAACTGTAATAGCCTCAACCCACCGCTAGCAGATATTGTCCTCTTTGAACTTTTCCTTTTAGACTTCCTTTCTAGTTTTTTAAAACGTGTTTGCTAGGGAGAGTTTTCCACACTCTTATAAAGAATGTTTTGTTTCCTTCTTCAACCGATGTGGGATCTTACAATTCACCCCAAGATAAAGAATGTTTTGTTTCCTTCTCCAACCGATGTGGGATCTCACAAATCACCCCAAGATAAAGAACGTTTTGTTTCCTTCAACCGATGTGGGATCTCACAATTCACCCCCTTCGGGGCTAGTGTCCTCGCTGACACACCGTCCGGTGTCCACCCCCTTTTGTGGCTCAACGTCTTCACTGGCACACTGTTCGGTGTCTAGCCCTAATACCATTTGTAACAGTCTAAACCCACAACTAGCAGATATTGTCCTCTTTGGATTTTTCTCTCAAGGTTTTTAAAATGCGTCTGGTATAGAGAAGTTTTCACATCTTTATAAAAAAATGTTTCGTTTTCCTCTCCAACCGATGTAGGATCTCACAAGAACAATGGACAAAACAAGGGACCATGATTTATCTCCATGTGCGTAGTGGGTTGGATATCTTTTCGGAACCACATATTTGTATTAGTTTTCTACTTGATATTATTTTATTTTTTAGAAACCGAGATTTGAAAAACATAAAAGATTGTACAAATGAGCATATAAAATTTAGTTTTTTAGGCATAGCAGAATTCATAATACCAATAAGTTGCTGCGGTGCAGTTGTCAACTTACTGTCGTTGAGGTGACCCAAGCGCTCGCCTATGGTGAGAGGCGAGGCAACCTGAGGCCTGTGCGCCTTGTAACCAGCTGGGGCGAGCGACTTCAATCAGGCACTTGCCCCACTGCACGCAGTGCAAGGCGTTCACCCCCTTGTGATCATGCTAAAATCAAAACAGAAAAAATAAAGCTTCTCCGTGACTCGATTATTATTGGAATGAGTATTGTTCTTGTACGGCATTGATATTTTATGTAAATATGTTTACATAAACTTATGATCTTTATTTATTACGTCTCGCTTCGCTGAGGTGTCACTTTGATGAGTCAATCAAGGTGCGCTATTAACTTTGAAAAAACTAGTACAATTATGTCCTGAA

mRNA sequence

ATGAAGCGGCTTCTGTTTTCCAATTTCCAGTACTACCACAGTTGTCAACTTACTGTCGTTGAGGTGACCCAAGCGCTCGCCTATGGTGAGAGGCGAGGCAACCTGAGGCCTGTGCGCCTTGTAACCAGCTGGGGCGAGCGACTTCAATCAGGCACTTGCCCCACTGCACGCAGTGCAAGGCGTTCACCCCCTTGTGATCATGCTAAAATCAAAACAGAAAAAATAAAGCTTCTCCGTGACTCGATTATTATTGGAATGAGTATTGTTCTTGTACGGCATTGATATTTTATGTAAATATGTTTACATAAACTTATGATCTTTATTTATTACGTCTCGCTTCGCTGAGGTGTCACTTTGATGAGTCAATCAAGGTGCGCTATTAACTTTGAAAAAACTAGTACAATTATGTCCTGAA

Coding sequence (CDS)

ATGAAGCGGCTTCTGTTTTCCAATTTCCAGTACTACCACAGTTGTCAACTTACTGTCGTTGAGGTGACCCAAGCGCTCGCCTATGGTGAGAGGCGAGGCAACCTGAGGCCTGTGCGCCTTGTAACCAGCTGGGGCGAGCGACTTCAATCAGGCACTTGCCCCACTGCACGCAGTGCAAGGCGTTCACCCCCTTGTGATCATGCTAAAATCAAAACAGAAAAAATAAAGCTTCTCCGTGACTCGATTATTATTGGAATGAGTATTGTTCTTGTACGGCATTGA

Protein sequence

MKRLLFSNFQYYHSCQLTVVEVTQALAYGERRGNLRPVRLVTSWGERLQSGTCPTARSARRSPPCDHAKIKTEKIKLLRDSIIIGMSIVLVRH
Homology
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BLAST of CmoCh13G000140 vs. NCBI nr
Match: KAG6583328.1 (hypothetical protein SDJN03_19260, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.7 bits (348), Expect = 2.6e-29
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0 

Query: 21  EVTQALAYGERRGNLRPVRLVTSWGERLQSGTCPTARSARRSPPCDHAKIKTEKIKLLRD 80
           +VTQALAYGERRG LRP+RLVTSWGERLQSGTCPTARSARRSPPCDHAKIKTEK+KLLRD
Sbjct: 54  QVTQALAYGERRGYLRPLRLVTSWGERLQSGTCPTARSARRSPPCDHAKIKTEKMKLLRD 113

Query: 81  SIIIGMSIVLVRH 94
           SIIIGMS VLVRH
Sbjct: 114 SIIIGMSNVLVRH 126

The following BLAST results are available for this feature:
BLAST of CmoCh13G000140 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G000140 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G000140 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583328.12.6e-2993.15hypothetical protein SDJN03_19260, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh13G000140 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G000140.1CmoCh13G000140.1mRNA