CmoCh13G000080 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G000080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Methyltransferase-related protein, putative
Location	Cmo_Chr13: 136514 .. 136877 (+)
RNA-Seq Expression	CmoCh13G000080
Synteny	CmoCh13G000080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACTCTTGCCGGCTTCTTTGTTCTCCGGAACCTCAAATCTCAGCCGCAAGATTTCGAGGCCGACGATAATTCCGAGACCCACTCCAACGATGTGTCTACCAATTCGGCCTCCTCGTCCTCCTTCTCCAAGGTTCTTGTCATTCTTTTATACCGGAATCTCGCATTTCCTTCTTGTTTCTTTGTTTGTGTCTGAACGGAAGGATTGTGGTTTGTTTGAACAGGTGTCCTCGGCAATGCAATCGGGATTCTGGACGGTGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTGCCCTCGTCGAAGAAGCCTTCCAATTGA

mRNA sequence

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACTCTTGCCGGCTTCTTTGTTCTCCGGAACCTCAAATCTCAGCCGCAAGATTTCGAGGCCGACGATAATTCCGAGACCCACTCCAACGATGTGTCTACCAATTCGGCCTCCTCGTCCTCCTTCTCCAAGGTTCTTGTGTCCTCGGCAATGCAATCGGGATTCTGGACGGTGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTGCCCTCGTCGAAGAAGCCTTCCAATTGA

Coding sequence (CDS)

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACTCTTGCCGGCTTCTTTGTTCTCCGGAACCTCAAATCTCAGCCGCAAGATTTCGAGGCCGACGATAATTCCGAGACCCACTCCAACGATGTGTCTACCAATTCGGCCTCCTCGTCCTCCTTCTCCAAGGTTCTTGTGTCCTCGGCAATGCAATCGGGATTCTGGACGGTGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTGCCCTCGTCGAAGAAGCCTTCCAATTGA

Protein sequence

MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVSSAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN

Homology

[Close]

BLAST of CmoCh13G000080 vs. ExPASy TrEMBL
Match: A0A6J1KER9 (uncharacterized protein LOC111492605 OS=Cucurbita maxima OX=3661 GN=LOC111492605 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-30
Identity = 74/92 (80.43%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1   MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
           MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAD+NS+ HSND+S+NS SS       V+
Sbjct: 68  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADENSDAHSNDLSSNSTSSK------VT 127

Query: 61  SAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
           SAMQSGFWTVVDMASGRYLWRHL PSS+K S+
Sbjct: 128 SAMQSGFWTVVDMASGRYLWRHLFPSSQKRSD 153

[Close]

BLAST of CmoCh13G000080 vs. ExPASy TrEMBL
Match: A0A6J1GAZ0 (uncharacterized protein LOC111452533 OS=Cucurbita moschata OX=3662 GN=LOC111452533 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDFEA+DNS+ HSND+S+NS SS       V+
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFEAEDNSDAHSNDLSSNSTSSK------VT 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
          SAMQSGFWTVVDMASGRYLWR+L PSS+K S+
Sbjct: 61 SAMQSGFWTVVDMASGRYLWRNLFPSSQKRSD 86

[Close]

BLAST of CmoCh13G000080 vs. ExPASy TrEMBL
Match: A0A0A0LV42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDF A DNS+ +SN+   +S+ SSS SKV   
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEF--DSSDSSSCSKV--- 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
              SGFWT+VDMASGRYLWRHL PSSKKPS+
Sbjct: 61 ---SSGFWTLVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of CmoCh13G000080 vs. ExPASy TrEMBL
Match: A0A6J1DPZ0 (uncharacterized protein LOC111022014 OS=Momordica charantia OX=3673 GN=LOC111022014 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-25
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE-ADDNSETHSNDVSTNSASSSSFSKVLV 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE ADDNS+ HSND S+ + SS+S SKV  
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAADDNSDAHSND-SSAAHSSNSTSKV-- 60

Query: 61 SSAMQSGFWTVVDMASGRYLWRHLLPSSKKP 91
               SGFWTVVDMASGRYLWRHL PSS  P
Sbjct: 61 ----SSGFWTVVDMASGRYLWRHLFPSSSSP 84

[Close]

BLAST of CmoCh13G000080 vs. ExPASy TrEMBL
Match: A0A1S3BWD8 (uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.5e-25
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDF A DNS+  S ++  +S+ S+S SKV   
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKEL--DSSDSTSCSKV--- 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
              SGFWTVVDMASGRYLWRHL PSSKKPS+
Sbjct: 61 ---SSGFWTVVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of CmoCh13G000080 vs. NCBI nr
Match: KAG7019097.1 (hypothetical protein SDJN02_18055, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSK  VS
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSK--VS 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
          SAMQSGFWT+VDMASGRYLWRHLLPSSKKPSN
Sbjct: 61 SAMQSGFWTLVDMASGRYLWRHLLPSSKKPSN 90

[Close]

BLAST of CmoCh13G000080 vs. NCBI nr
Match: KAG6583321.1 (hypothetical protein SDJN03_19253, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSS+FSK  VS
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSAFSK--VS 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
          SAMQSGFWT+VDMASGRYLWRHLLPSSKKPSN
Sbjct: 61 SAMQSGFWTLVDMASGRYLWRHLLPSSKKPSN 90

[Close]

BLAST of CmoCh13G000080 vs. NCBI nr
Match: XP_023519406.1 (uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.5 bits (410), Expect = 1.7e-36
Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTN----SASSSSFSK 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTN    S+SSSSFSK
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSTSSSSSSSSFSK 60

Query: 61 VLVSSAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
            VSSAMQSGFWTVVDMASGRYLWRHL+PSSKKPSN
Sbjct: 61 --VSSAMQSGFWTVVDMASGRYLWRHLMPSSKKPSN 94

[Close]

BLAST of CmoCh13G000080 vs. NCBI nr
Match: XP_023525661.1 (uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.7 bits (361), Expect = 8.1e-31
Identity = 75/92 (81.52%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNS+ HSND+S+NS SS       V+
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSDAHSNDLSSNSTSSK------VT 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
          SAMQSGFWTVVDMASGRYLWRHL PSS+K S+
Sbjct: 61 SAMQSGFWTVVDMASGRYLWRHLFPSSQKRSD 86

[Close]

BLAST of CmoCh13G000080 vs. NCBI nr
Match: XP_022997733.1 (uncharacterized protein LOC111492605 [Cucurbita maxima])

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-30
Identity = 74/92 (80.43%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1   MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
           MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAD+NS+ HSND+S+NS SS       V+
Sbjct: 68  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADENSDAHSNDLSSNSTSSK------VT 127

Query: 61  SAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
           SAMQSGFWTVVDMASGRYLWRHL PSS+K S+
Sbjct: 128 SAMQSGFWTVVDMASGRYLWRHLFPSSQKRSD 153

[Close]

BLAST of CmoCh13G000080 vs. TAIR 10
Match: AT5G58375.1 (Methyltransferase-related protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-16
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSET-HSNDVSTNSASSSSFSKVLV 60
          MCPLR ILIFLSATLAGFFVL+ L S   D   D  ++  H++D S      S FSK  V
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSV-----SGFSK--V 60

Query: 61 SSAMQSGFWTVVDMASGRYLWRHLLPSSKKPS 92
            AM+SGFWT VDMASGRYLW +L  ++K+ S
Sbjct: 61 GMAMKSGFWTCVDMASGRYLWNNLCSNAKRSS 85

[Close]

BLAST of CmoCh13G000080 vs. TAIR 10
Match: AT5G18150.1 (Methyltransferase-related protein )

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-11
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCP+RF+L+F SA LAG+F  + + S P+    D+ +E                 ++ + 
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPEFDSPDELNEK---------------QELNLK 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHLLPSSKK 90
            M++GFW  VDMASGRYLWR+L    +K
Sbjct: 61 KKMENGFWVFVDMASGRYLWRNLKEMREK 74

[Close]

BLAST of CmoCh13G000080 vs. TAIR 10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCPLRF+L+F SA LAG+   R + S P+ F +D+  +  + +          F +    
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELF-SDELLQAEAKE-----KQGLDFKR---- 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHL 84
            M +G WT VDMASGRYLWR+L
Sbjct: 61 -KMDNGLWTFVDMASGRYLWRNL 72

The following BLAST results are available for this feature:

BLAST of CmoCh13G000080 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G000080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KER9	1.1e-30	80.43	uncharacterized protein LOC111492605 OS=Cucurbita maxima OX=3661 GN=LOC111492605...	[more]
A0A6J1GAZ0	1.3e-29	78.26	uncharacterized protein LOC111452533 OS=Cucurbita moschata OX=3662 GN=LOC1114525...	[more]
A0A0A0LV42	1.1e-25	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1	[more]
A0A6J1DPZ0	1.4e-25	78.02	uncharacterized protein LOC111022014 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A1S3BWD8	5.5e-25	73.91	uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=...	[more]

BLAST of CmoCh13G000080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019097.1	1.8e-38	96.74	hypothetical protein SDJN02_18055, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6583321.1	4.0e-38	95.65	hypothetical protein SDJN03_19253, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023519406.1	1.7e-36	91.67	uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo]	[more]
XP_023525661.1	8.1e-31	81.52	uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo]	[more]
XP_022997733.1	2.4e-30	80.43	uncharacterized protein LOC111492605 [Cucurbita maxima]	[more]

BLAST of CmoCh13G000080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58375.1	1.2e-16	56.52	Methyltransferase-related protein	[more]
AT5G18150.1	2.6e-11	38.20	Methyltransferase-related protein	[more]
AT5G14602.1	1.9e-09	42.17	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..52
None	No IPR available	PANTHER	PTHR34132	EMB\|CAB87627.1-RELATED	coord: 1..91
None	No IPR available	PANTHER	PTHR34132:SF4	EXPRESSED PROTEIN	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G000080.1	CmoCh13G000080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity