CmoCh12G013550 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G013550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-box protein 1a-like
Location	Cmo_Chr12: 11680775 .. 11683882 (+)
RNA-Seq Expression	CmoCh12G013550
Synteny	CmoCh12G013550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAGATTACACGAGAAGCCTGTCAGGTATTTTCTTTCCTTCTTTCTTTATATGTTTCTTACTGGAGTTTGTTATATGTAGTGTACATATTCAATATTCTTTTCCATTTCTATGCTCTCATCAAATTTTACTCTTATTGAGTGTTGTTAAGGCTATGAATTCTATCTATGCCATAGACTTGGCTAATCCCATGGTTTGGACAATCTAACCTTGTTAGGCTCATGAATCTATTGAACTACTTCACTCCCATTCTAGGGATGTAAGTTGTTGATTAGGTTTCCTTCAGGTTCTCAGTGCACTTAGTCACTTGATCACTAGTCTCTTTGGTTCATTCAAGTCAATACCCAATTGATGTATGAGTCAGGAGTGCTTTCATCAAAACTCGAATTGTAAGGTAGATTTAATTGGTACGGATCAACGTCTCCCCATTAGCAACCTCACTATTTTGGTATATAGTCTTAATAATGTTTTTTTCCCATTTGAGGAAAAAAAAAACTTCATTTGAATTTGTTTGGATTATTAGGGATAAATTGGCAAAGTTGATGGAATAATAAAATTTTAAAAGTTTAAATATATGGTTTATGATTTAAGAATTAGATATTTATGAGATAAAATATGTATTTTTATTGATTTTAGTCGATAAACTGACTCACAGTTGTATTTCATATTTTTAAGTGATATTAATGGGTGTCGACATATATATAAAAAGGGTGTGTCGACATATATATAAAAAGGGTGTGTCGACATAATGATGTAATTATAATATTGGTGAAGTACACAATACACTATAAAACAAACTTAAATGGTAATAACAAATTTCATTGAAAATAAAAATTCAAGACGCCGCAGCTACAGCTACAGGAAATCGGTCCGCCCGTGTCAAGGAGACGGATTAAGAAGCATCTTTCTTGCAACTTTCCTTTTTGTGCCAACCATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCTACCAAGAAACCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGGTAATTACGGAACCCTAATCTTTAGCCCTTCACACGGCGTTGCTATTACTGCTCTCACTCTCCCGTTTTGCCTTCTTTCATCGGAATCCTCCTCTCTAATTTTTGTGTTATTCATTTCTTAATTCAGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGTAAGTTTATCATCATTTGATCAAGTTCTAAGATATCTGGAATGATCTTCCTCTTAATTCTCTATATTATTTGTATTTTCTTTAGCCATTCACCCTTGTTTGTTATGTAGGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGTACGTTTGTTTTTTTTATAGAAACATTTCCTCTCCCTATCCCCAATCCATTCACGCAGACACAATGTGCTATTATTTTCTACCTCGCTCCTTACGGATACTGAGGTGGATGATTGGGCCTCTATGCTGAATATTTAAAGCCATGTCATATTTTCTAATTAGGAGGATGTCGAAGTGCGTTCCCTTCATATCAATGGTTGCTTTTCTGTCAATTCCTCAGACCTTTAGCTTGTTTGTTAACACAGCCATACTGACCTAATCCGTAGTAAGCTAACCTGGGAGGCCAAAATTCTGGAAAAGTGAAAGTCTTCCTAGGGATTCTGATACAAGGGAAACTGAGTACGTGTGAGAAGCTTCAATGAAGCGTTCCGAATGGCTGGTGATGTATCCTGTGCAGGAAAGACAAGAGAGCCATTTTCATGTTTTTGTCCACTGCCCATTTTCTGCCGCTATTTGTTGAGCTAAGCATTGTTATGTATTTGGTATGAGTTGATGCTCCCGTAAGACCTCTGAGAATTACTGCCATCCAACTGTTAGGGCATAATCTAAATGGTCAAATTATAATCAGAGACTTTTTAGAGGGTTGATTCTAGCTCGGAAAGCTTTTGGGATCTCAGGAAACTCTATTAAGAACTGAACTTGTTATTTAACTTAAAAAGATTGCCTTTTGGATTGATTGATTATTACTCTATCCAACTTACAGTATGAAACATTATTTTGCAATTGCCCTTGATGTGGAATTATAGCAGGAGCCAACGACTGATGATACCTGGTGTTGAATTTTTATATATTTGTAGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCATTGGGTATGCATTTCACATTCTTGCCTTGCCTTTCAACCACAATGTTTTTCTAAAAAAATGAATTTTGGTAATTGAAGAAAGCTTTGCCATTTTACAGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAGAACTTTGCTGCTGAGAATATGGATCCTTAAATTCTCATGGGTCTCTAATGTTGTCGACGATGAACTCTCTCCATACATGGTTTCTGAAATTTGCGATCTGAAGATGCATTTTGTTGAGCAACTACAATTTTCCAGAGAATTATGTGATTTTATTTGGGAGTTGTTTGTAGAAATAGGCTAGCACTTGAACGTTAGTTCTTGTTTTACCGTTTACCATTTCTGTACTTGTATTTATGTTAACATCTCACTCGGTTCATCTGGAAAATTTGGATCTTATTGTTGCCTATTTGCTCTTCGGTTCTTGTTTGTCTATCGGATATTCTTCTTCCCATAATATAATCGTGTTCTTCACCGAATGAATTCTTCTAAAGTGATCTTACTTTAGAATGATTGTTGGCTGTTCTGAATGAAAAATACCAGTTGGCTGTAACGATGAGAAAATATAACATCATGGATTTGGTTGATATTCAGAACAGGTTAAAATTGTTATTTTGTTTTTCTTCTGAATATATTGCATGATGACTATGTTCTTCTTCTGAATTGTTAACTGGCACTTTTGTGTTGCTATCGAACTGTGCTGAGCTCTCTCAGTTTGTGCAGGCAAGGAGTTTGGGATGCCCATTCTTCTCACTTTGTTGCAGCCGGACGCTCCAGTTTTTGCTGATTGCCCCGCACCTCACACAGTTAACAGTTGCTAA

mRNA sequence

ATGTTTAGATTACACGAGAAGCCTGTCAGACGCCGCAGCTACAGCTACAGGAAATCGGTCCGCCCGTGTCAAGGAGACGGATTAAGAAGCATCTTTCTTGCAACTTTCCTTTTTGTGCCAACCATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCTACCAAGAAACCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGCAAGGAGTTTGGGATGCCCATTCTTCTCACTTTGTTGCAGCCGGACGCTCCAGTTTTTGCTGATTGCCCCGCACCTCACACAGTTAACAGTTGCTAA

Coding sequence (CDS)

ATGTTTAGATTACACGAGAAGCCTGTCAGACGCCGCAGCTACAGCTACAGGAAATCGGTCCGCCCGTGTCAAGGAGACGGATTAAGAAGCATCTTTCTTGCAACTTTCCTTTTTGTGCCAACCATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCTACCAAGAAACCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGCAAGGAGTTTGGGATGCCCATTCTTCTCACTTTGTTGCAGCCGGACGCTCCAGTTTTTGCTGATTGCCCCGCACCTCACACAGTTAACAGTTGCTAA

Protein sequence

MFRLHEKPVRRRSYSYRKSVRPCQGDGLRSIFLATFLFVPTMDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGKEFGMPILLTLLQPDAPVFADCPAPHTVNSC

Homology

[Close]

BLAST of CmoCh12G013550 vs. ExPASy Swiss-Prot
Match: Q940X7 (RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-35
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 41  TMDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 100
           T+DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDL
Sbjct: 3   TLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDL 62

Query: 101 CIECQANQASATSEECTVAWG 121
           CIECQANQASATSEECTVAWG
Sbjct: 63  CIECQANQASATSEECTVAWG 83

[Close]

BLAST of CmoCh12G013550 vs. ExPASy Swiss-Prot
Match: Q9M2B0 (RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.6e-29
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 41  TMDSDVTMVPVGEASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 100
           +++SDV M   GE+SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDL
Sbjct: 3   SLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDL 62

Query: 101 CIECQANQASATSEECTVAWG 121
           CIEC ANQASATSEECTVAWG
Sbjct: 63  CIECLANQASATSEECTVAWG 80

[Close]

BLAST of CmoCh12G013550 vs. ExPASy Swiss-Prot
Match: Q9W5E1 (RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 60  PSSTKK--PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 119
           PSS+ K   KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV
Sbjct: 11  PSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 70

Query: 120 AWG 121
           AWG
Sbjct: 71  AWG 73

[Close]

BLAST of CmoCh12G013550 vs. ExPASy Swiss-Prot
Match: P62877 (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 48  MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 107
           M    +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 108 ASATSEECTVAWG 121
           ASATSEECTVAWG
Sbjct: 61  ASATSEECTVAWG 73

[Close]

BLAST of CmoCh12G013550 vs. ExPASy Swiss-Prot
Match: P62878 (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 48  MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 107
           M    +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 108 ASATSEECTVAWG 121
           ASATSEECTVAWG
Sbjct: 61  ASATSEECTVAWG 73

[Close]

BLAST of CmoCh12G013550 vs. ExPASy TrEMBL
Match: A0A6J1HSM1 (RING-box protein 1a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465785 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.4e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 42  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 101
           MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60

Query: 102 ECQANQASATSEECTVAWG 121
           ECQANQASATSEECTVAWG
Sbjct: 61  ECQANQASATSEECTVAWG 79

[Close]

BLAST of CmoCh12G013550 vs. ExPASy TrEMBL
Match: A0A6J1FB79 (RING-box protein 1a-like OS=Cucurbita moschata OX=3662 GN=LOC111444049 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.4e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 42  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 101
           MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60

Query: 102 ECQANQASATSEECTVAWG 121
           ECQANQASATSEECTVAWG
Sbjct: 61  ECQANQASATSEECTVAWG 79

[Close]

BLAST of CmoCh12G013550 vs. ExPASy TrEMBL
Match: A0A4D6N8D2 (RING-box protein 1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g779 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.2e-38
Identity = 77/89 (86.52%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 41  TMDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 100
           T+DSDVTMVP GE SSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TLDSDVTMVPAGEPSSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 101 IECQANQASATSEECTVAWGKEFGMPILL 130
           IECQANQASATSEECTVAWG  F + +++
Sbjct: 63  IECQANQASATSEECTVAWGTLFWLDVIV 91

[Close]

BLAST of CmoCh12G013550 vs. ExPASy TrEMBL
Match: A0A6P4A6G4 (RING-box protein 1a OS=Ziziphus jujuba OX=326968 GN=LOC107423885 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.2e-38
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 41  TMDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 100
           T+DSDV MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 101 IECQANQASATSEECTVAWG 121
           IECQANQASATSEECTVAWG
Sbjct: 63  IECQANQASATSEECTVAWG 82

[Close]

BLAST of CmoCh12G013550 vs. ExPASy TrEMBL
Match: A0A6J1DPM4 (RING-box protein 1a-like OS=Momordica charantia OX=3673 GN=LOC111021926 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.2e-38
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 41  TMDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 100
           T+DSDV MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 101 IECQANQASATSEECTVAWG 121
           IECQANQASATSEECTVAWG
Sbjct: 63  IECQANQASATSEECTVAWG 82

[Close]

BLAST of CmoCh12G013550 vs. TAIR 10
Match: AT5G20570.1 (RING-box 1 )

HSP 1 Score: 151.0 bits (380), Expect = 7.7e-37
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 41  TMDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 100
           T+DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDL
Sbjct: 3   TLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDL 62

Query: 101 CIECQANQASATSEECTVAWG 121
           CIECQANQASATSEECTVAWG
Sbjct: 63  CIECQANQASATSEECTVAWG 83

[Close]

BLAST of CmoCh12G013550 vs. TAIR 10
Match: AT5G20570.2 (RING-box 1 )

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-36
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 41  TMDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 100
           T+DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDL
Sbjct: 3   TLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDL 62

Query: 101 CIECQANQASATSEECTVAW 120
           CIECQANQASATSEECTVAW
Sbjct: 63  CIECQANQASATSEECTVAW 82

[Close]

BLAST of CmoCh12G013550 vs. TAIR 10
Match: AT5G20570.3 (RING-box 1 )

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-32
Identity = 71/99 (71.72%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 41  TMDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWD---------------- 100
           T+DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAW                 
Sbjct: 3   TLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWGNLENPYTLSSIGLSMF 62

Query: 101 --IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG 121
             IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG
Sbjct: 63  RYIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG 101

[Close]

BLAST of CmoCh12G013550 vs. TAIR 10
Match: AT3G42830.1 (RING/U-box superfamily protein )

HSP 1 Score: 128.3 bits (321), Expect = 5.4e-30
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 41  TMDSDVTMVPVGEASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 100
           +++SDV M   GE+SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDL
Sbjct: 3   SLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDL 62

Query: 101 CIECQANQASATSEECTVAWG 121
           CIEC ANQASATSEECTVAWG
Sbjct: 63  CIECLANQASATSEECTVAWG 80

The following BLAST results are available for this feature:

BLAST of CmoCh12G013550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940X7	1.1e-35	88.89	RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1	[more]
Q9M2B0	7.6e-29	77.78	RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1	[more]
Q9W5E1	1.4e-27	90.48	RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1	[more]
P62877	1.4e-27	76.71	E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1	[more]
P62878	1.4e-27	76.71	E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1	[more]

BLAST of CmoCh12G013550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HSM1	1.4e-38	100.00	RING-box protein 1a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465785 ...	[more]
A0A6J1FB79	1.4e-38	100.00	RING-box protein 1a-like OS=Cucurbita moschata OX=3662 GN=LOC111444049 PE=4 SV=1	[more]
A0A4D6N8D2	3.2e-38	86.52	RING-box protein 1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g779 PE=4 SV=1	[more]
A0A6P4A6G4	4.2e-38	97.50	RING-box protein 1a OS=Ziziphus jujuba OX=326968 GN=LOC107423885 PE=4 SV=1	[more]
A0A6J1DPM4	4.2e-38	97.50	RING-box protein 1a-like OS=Momordica charantia OX=3673 GN=LOC111021926 PE=4 SV=...	[more]

BLAST of CmoCh12G013550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20570.1	7.7e-37	88.89	RING-box 1	[more]
AT5G20570.2	5.0e-36	88.75	RING-box 1	[more]
AT5G20570.3	1.2e-32	71.72	RING-box 1	[more]
AT3G42830.1	5.4e-30	77.78	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 56..124 e-value: 3.4E-16 score: 61.2
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 87..121 e-value: 7.8E-8 score: 32.5
None	No IPR available	PANTHER	PTHR11210	RING BOX	coord: 42..120
None	No IPR available	PANTHER	PTHR11210:SF51	RING-BOX PROTEIN 1A	coord: 42..120
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 67..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G013550.1	CmoCh12G013550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031145	anaphase-promoting complex-dependent catabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005680	anaphase-promoting complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0016462	pyrophosphatase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding