CmoCh12G013360 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G013360
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	BHLH domain-containing protein
Location	Cmo_Chr12: 11605521 .. 11606667 (-)
RNA-Seq Expression	CmoCh12G013360
Synteny	CmoCh12G013360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCTAGAAGCTCAGTCTCAAGGGGAAGAAACTGCCAAATCATTCGTTAACGAACGCTTCACCGTTAGGGTTTCCCACGCGCCGCCGTCTATTAATGGAACGGAAATTATAGACTTGGAAATTACGGTTAGAGGCGAAGGATCGTTAATGGCGGATATTGTAATTCGCGTGCTGGAATTCTTGAAGAATGCTGTGAATGTGGGGGTAATTTTGTCATTTCACAGCATTGAGCAGATTTCTCCTTCTTCTCTTGTTAGCCGCCTCCGTTTCAGATTCAGCCTTCAGGTTTGCTTCCTCTCTCTCGTTTTTAGGGTTTTGTTTAAATTATTTTTATTTATTTATTTTGTCTGTGAATAGGATGGCGAATGGGACGAGTCGGGTTTCCTGGAAGCAGTGAGAAGAATTGTGTCCGACTTGGCGCCCACGTACAACGAAAAACAACCATAACAGCCCAATAATATTTTGCCACGTGTAAACGCTATTTTTCTCCAACTTCAACCTTGACCGTCGATTTTGCTGTGACCACATATTTTGTACCTTATACTATAGGTTTCAAACCTTGGAATTTATTATTCATTTCAAAATCATTAATTATTACTTATCGGATTATTCTTTAAATTTTTAAAATGACGAACACGACTCTCCACACTAGTATGATATTGTTCGCATAATAATATTATTTTAAATTATTTTAAGACTATTATTTTTAAAGAATTAGAAAAAAAAAAACAATGTTTCTCCAAATCCTTTCCTAGTTCAAATACAATTCATCTTCATGAATTGGTGGGTCCCAACCAACTCCTTTAGAGGCAATCAGGAATTGGAAATTGGTATTTGAATTCCTTGATTGTATGAGGACATGTGGGTCACAGGTATTGGTACATCAGATGGGCTTGATACCGAGAATGGGCCGGAGCTGTTAATTTGGGCTTTGAATTGTTGAATTGTAAAAGCCCACCTTAGGTGATTTAATTTTGAATCGTTGAAATTGTATTTTCGTTGGGCGTTCCATATAAAAGGAAATAAATGGATGGAGTGCTAGGTCTCGAACAAGTGTGCGAGGGTATTTAGAAGGTCGGGCACGTTGAGGCGGCCCCTTTCACTTCTTTTTCCTCGCTCCCTTGTATTCAATCTAGGGTTTTAG

mRNA sequence

ATGCTTCTAGAAGCTCAGTCTCAAGGGGAAGAAACTGCCAAATCATTCGTTAACGAACGCTTCACCGTTAGGGTTTCCCACGCGCCGCCGTCTATTAATGGAACGGAAATTATAGACTTGGAAATTACGGTTAGAGGCGAAGGATCGTTAATGGCGGATATTGTAATTCGCGTGCTGGAATTCTTGAAGAATGCTGTGAATGTGGGGGTAATTTTGTCATTTCACAGCATTGAGCAGATTTCTCCTTCTTCTCTTGTTAGCCGCCTCCGTTTCAGATTCAGCCTTCAGGTCTCGAACAAGTGTGCGAGGGTATTTAGAAGGTCGGGCACGTTGAGGCGGCCCCTTTCACTTCTTTTTCCTCGCTCCCTTGTATTCAATCTAGGGTTTTAG

Coding sequence (CDS)

ATGCTTCTAGAAGCTCAGTCTCAAGGGGAAGAAACTGCCAAATCATTCGTTAACGAACGCTTCACCGTTAGGGTTTCCCACGCGCCGCCGTCTATTAATGGAACGGAAATTATAGACTTGGAAATTACGGTTAGAGGCGAAGGATCGTTAATGGCGGATATTGTAATTCGCGTGCTGGAATTCTTGAAGAATGCTGTGAATGTGGGGGTAATTTTGTCATTTCACAGCATTGAGCAGATTTCTCCTTCTTCTCTTGTTAGCCGCCTCCGTTTCAGATTCAGCCTTCAGGTCTCGAACAAGTGTGCGAGGGTATTTAGAAGGTCGGGCACGTTGAGGCGGCCCCTTTCACTTCTTTTTCCTCGCTCCCTTGTATTCAATCTAGGGTTTTAG

Protein sequence

MLLEAQSQGEETAKSFVNERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADIVIRVLEFLKNAVNVGVILSFHSIEQISPSSLVSRLRFRFSLQVSNKCARVFRRSGTLRRPLSLLFPRSLVFNLGF

Homology

[Close]

BLAST of CmoCh12G013360 vs. ExPASy Swiss-Prot
Match: Q9LTS4 (Putative transcription factor bHLH041 OS=Arabidopsis thaliana OX=3702 GN=BHLH41 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.5e-05
Identity = 26/71 (36.62%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 3   LEAQSQGEETAKSFV--NERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADIVIRVLE 62
           +EA+  GE   ++ +   ERF VR+ H P S +    +DL + +RG+   + D++IR+LE
Sbjct: 348 VEAKLAGEREIENDLRPEERFNVRIRHIPESTSRERTLDLRVVLRGDIIRVDDLMIRLLE 407

Query: 63  FLKNAVNVGVI 72
           FLK   NV ++
Sbjct: 408 FLKQINNVSLV 418

[Close]

BLAST of CmoCh12G013360 vs. ExPASy TrEMBL
Match: A0A6J1FCH4 (uncharacterized protein LOC111444143 OS=Cucurbita moschata OX=3662 GN=LOC111444143 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.3e-42
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1   MLLEAQSQGEETAKSFVNERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADIVIRVLE 60
           MLLEAQSQGEETAKSFVNERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADIVIRVLE
Sbjct: 245 MLLEAQSQGEETAKSFVNERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADIVIRVLE 304

Query: 61  FLKNAVNVGVILSFHSIEQISPSSLVSRLRFRFSLQ 97
           FLKNAVNVGVILSFHSIEQISPSSLVSRLRFRFSLQ
Sbjct: 305 FLKNAVNVGVILSFHSIEQISPSSLVSRLRFRFSLQ 340

[Close]

BLAST of CmoCh12G013360 vs. ExPASy TrEMBL
Match: A0A6J1HKA4 (uncharacterized protein LOC111465335 OS=Cucurbita maxima OX=3661 GN=LOC111465335 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 2   LLEAQSQGEETAKSFVNERFTVRVSHAP----PSINGTEIIDLEITVRGEGSLMADIVIR 61
           LLEAQSQGEETA S + ERFTVRVSHAP    PSING EIIDLEITVRG GSLMADIVIR
Sbjct: 257 LLEAQSQGEETANSLLYERFTVRVSHAPPGFTPSINGMEIIDLEITVRGGGSLMADIVIR 316

Query: 62  VLEFLKNAVNVGVILSFHSIEQISPSSLVSRLRFRFSLQ 97
           VLEFLKN VNVGVILSFH IEQISPSSL+SRLRFRFSLQ
Sbjct: 317 VLEFLKNVVNVGVILSFHGIEQISPSSLISRLRFRFSLQ 355

[Close]

BLAST of CmoCh12G013360 vs. ExPASy TrEMBL
Match: A0A6J1DKX4 (putative transcription factor bHLH041 OS=Momordica charantia OX=3673 GN=LOC111021867 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.8e-19
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MLLEAQSQGEE---TAKSFVNERFTVRVSHAPPSINGTEIIDLEITVR-GEGSLMADIVI 60
           MLLEAQ   ++   T  S VNERFTVRVSHAP +    +  DLEITVR GEG LMA++ I
Sbjct: 337 MLLEAQPNNKQQAITTSSSVNERFTVRVSHAPAADEAEKFFDLEITVRSGEGLLMANVAI 396

Query: 61  RVLEFLKNAVNVGVILSFHSIEQISPSSLVSRLRFRFSLQ 97
           RVL+FL+NAV+VG +LSF   + ++PSS +SRL FRF+LQ
Sbjct: 397 RVLQFLRNAVDVGAVLSFRGDDTMAPSSSLSRLAFRFTLQ 436

[Close]

BLAST of CmoCh12G013360 vs. ExPASy TrEMBL
Match: A0A5A7V2J9 (Putative transcription factor bHLH041 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00500 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 12  TAKSFVNERFTVRVSHAPPSINGTE--IIDLEITVRGE-GSLMADIVIRVLEFLKNAVNV 71
           T  S +NE FTV+VS+APPS   T+  +IDLEI VRG+ G LM DI IRVL+FLK  VNV
Sbjct: 319 TPTSSLNEPFTVKVSYAPPSPGSTDEIVIDLEIIVRGDMGPLMTDIAIRVLQFLKTIVNV 378

Query: 72  GVILSFHSIEQISPSSLVSRLRFRFSLQ 97
            V+LSFH+    SPS L +RL FRFSLQ
Sbjct: 379 RVVLSFHANHTTSPSPL-TRLGFRFSLQ 405

[Close]

BLAST of CmoCh12G013360 vs. ExPASy TrEMBL
Match: A0A5D3CFU2 (Putative transcription factor bHLH041 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00980 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 12  TAKSFVNERFTVRVSHAPPSINGTE--IIDLEITVRGE-GSLMADIVIRVLEFLKNAVNV 71
           T  S +NE FTV+VS+APPS   T+  +IDLEI VRG+ G LM DI IRVL+FLK  VNV
Sbjct: 322 TPTSSLNEPFTVKVSYAPPSPGSTDEIVIDLEIIVRGDMGPLMTDIAIRVLQFLKTIVNV 381

Query: 72  GVILSFHSIEQISPSSLVSRLRFRFSLQ 97
            V+LSFH+    SPS L +RL FRFSLQ
Sbjct: 382 RVVLSFHANHTTSPSPL-TRLGFRFSLQ 408

[Close]

BLAST of CmoCh12G013360 vs. TAIR 10
Match: AT5G56960.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 48.1 bits (113), Expect = 6.0e-06
Identity = 26/71 (36.62%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 3   LEAQSQGEETAKSFV--NERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADIVIRVLE 62
           +EA+  GE   ++ +   ERF VR+ H P S +    +DL + +RG+   + D++IR+LE
Sbjct: 348 VEAKLAGEREIENDLRPEERFNVRIRHIPESTSRERTLDLRVVLRGDIIRVDDLMIRLLE 407

Query: 63  FLKNAVNVGVI 72
           FLK   NV ++
Sbjct: 408 FLKQINNVSLV 418

The following BLAST results are available for this feature:

BLAST of CmoCh12G013360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTS4	8.5e-05	36.62	Putative transcription factor bHLH041 OS=Arabidopsis thaliana OX=3702 GN=BHLH41 ...	[more]

BLAST of CmoCh12G013360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCH4	5.3e-42	100.00	uncharacterized protein LOC111444143 OS=Cucurbita moschata OX=3662 GN=LOC1114441...	[more]
A0A6J1HKA4	1.4e-34	86.87	uncharacterized protein LOC111465335 OS=Cucurbita maxima OX=3661 GN=LOC111465335...	[more]
A0A6J1DKX4	4.8e-19	59.00	putative transcription factor bHLH041 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A5A7V2J9	2.1e-14	61.36	Putative transcription factor bHLH041 isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3CFU2	2.1e-14	61.36	Putative transcription factor bHLH041 isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of CmoCh12G013360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56960.1	6.0e-06	36.62	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G013360.1	CmoCh12G013360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity