CmoCh12G013250 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G013250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L28-2-like
Location	Cmo_Chr12: 11559379 .. 11560947 (-)
RNA-Seq Expression	CmoCh12G013250
Synteny	CmoCh12G013250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCGACTTGTTGCAGCGCAGGTCCGCTTCTTCTTCCACCTTTCACATCTTCTTTTTTCTTTCAATTTCATCATCTTCAATCTGGTTTTTTCCATTTTTGTGTATCTTATATCAACTGCATCCTTACTTTTGTTGCTGATTTCCGTTACTTTTGTAGATGGCGAACGTTCCGGGGCAGTTGGTGTGGGAAATCGTTAAGAAAAACAGCTCTTTCCTCGTTAAAGAGTTTGGAAGAGGCAATGCAGGTGTTCAATTCAGCAAAGAGCCAAACAACCTCTACAATCTCAACTCCTACAAGCATTCCGGTAAGAAAAACATCTTTTACTTGTTAAGTATAATCGTTTTGAACTTGAGGAAAATATGAGGAATCAGCTGCCATTTTTGTTCTGCACATTTCCTTCCGGAATGGTTATTGAATCTTGTTTTAGTTCTTAGAAAGTGTTGGGAGGATTTATCTTATTTTATTTGCGTTGTGGAATGTTTTTGGGGACTCTTTCAGGCTTAGCGAACCGTAAGACAGTGACCATTCAGGCAGGGGGCAAGGATTTGTCAATATTGATAGCGACAACAAAGACGAAGAAGCAGAATAAACCCGCGAGTTTGCTCCACAAGTCAATTACGAGGAAGGAATTTCCTCGCATGGTTAAGACTGTGACTAATCAGGTAACTCTCCACTTCATTTTTTAATTGATGCCCACTCAGATGTAATTCAATATTGGATGTTTGCTGATTCTGCCTGCATTTTTCATTGGTCGTGCTTGGTTAATCAGGGAATTATTATGCTATTAAGAAGCTGCCAATAATGATTTTCAATTTTGTAGTTTTTTAGAGATCGTAATTGAACTGAATTGCACTGTTACAGTGACAAGAAGCTAACATGTTAGAAGGGTCACTTTTGTAGTTGTATCTTTGTTATGCCTGTCTTCTAAGCTCAATTTTCCATCGTTAACCTGTTAACACCTAAGGAGGTCCTTTTTGTAGTGGCATCTTCAATGAAATCTGTTTGTTACACTTGGCTTCTGAGCATCAATTTAAATTTAGTAGATATGGTGTTGGATGGTAGAACTTGTTGAAAAGATGAAAGAACTTGTTGAAAAGATGAAAGAACTTGTTGGATGGTATGCGTCAGATTAGATTTTGCTAAATCAAATCTGTTTTTTCTGAATAATAATGAATAACCAAACTCTTATTGAGGAGTGAACTTGTTGGATGGTATGCAGGTGGCTGACAATTACTACCGCCCAGACTTGAAGAACGCTGCCCTTGCAAAGCTAAGCGCAGTTCATAGGAGCCTTAAGGTTGCCAGGTCTGGTGTGAAGAAGAGGAACAGGCAGGCCATTAAGACACGCGGTAGGAAGTGAATCAATGGCTTATAAGGGTTTTTTTTCTTCCACTACTACCAGCTTTTTCACTCAATTTTCCAGAGCTTTTCTTTAATTTTAAATTCTTATGTACACTACTTGAAATTTTCAGTGTAGCTTTGAAAGGATTAGTTTAAGTATTAAACATTGAATTGATATCAAGACTAAAAAATTTGTACCCTCCAGAGCTCCTTGAAGGTTTATGAT

mRNA sequence

TCTTCGACTTGTTGCAGCGCAGATGGCGAACGTTCCGGGGCAGTTGGTGTGGGAAATCGTTAAGAAAAACAGCTCTTTCCTCGTTAAAGAGTTTGGAAGAGGCAATGCAGGTGTTCAATTCAGCAAAGAGCCAAACAACCTCTACAATCTCAACTCCTACAAGCATTCCGGCTTAGCGAACCGTAAGACAGTGACCATTCAGGCAGGGGGCAAGGATTTGTCAATATTGATAGCGACAACAAAGACGAAGAAGCAGAATAAACCCGCGAGTTTGCTCCACAAGTCAATTACGAGGAAGGAATTTCCTCGCATGGTTAAGACTGTGACTAATCAGGTGGCTGACAATTACTACCGCCCAGACTTGAAGAACGCTGCCCTTGCAAAGCTAAGCGCAGTTCATAGGAGCCTTAAGGTTGCCAGGTCTGGTGTGAAGAAGAGGAACAGGCAGGCCATTAAGACACGCGGTAGGAAGTGAATCAATGGCTTATAAGGGTTTTTTTTCTTCCACTACTACCAGCTTTTTCACTCAATTTTCCAGAGCTTTTCTTTAATTTTAAATTCTTATGTACACTACTTGAAATTTTCAGTGTAGCTTTGAAAGGATTAGTTTAAGTATTAAACATTGAATTGATATCAAGACTAAAAAATTTGTACCCTCCAGAGCTCCTTGAAGGTTTATGAT

Coding sequence (CDS)

ATGGCGAACGTTCCGGGGCAGTTGGTGTGGGAAATCGTTAAGAAAAACAGCTCTTTCCTCGTTAAAGAGTTTGGAAGAGGCAATGCAGGTGTTCAATTCAGCAAAGAGCCAAACAACCTCTACAATCTCAACTCCTACAAGCATTCCGGCTTAGCGAACCGTAAGACAGTGACCATTCAGGCAGGGGGCAAGGATTTGTCAATATTGATAGCGACAACAAAGACGAAGAAGCAGAATAAACCCGCGAGTTTGCTCCACAAGTCAATTACGAGGAAGGAATTTCCTCGCATGGTTAAGACTGTGACTAATCAGGTGGCTGACAATTACTACCGCCCAGACTTGAAGAACGCTGCCCTTGCAAAGCTAAGCGCAGTTCATAGGAGCCTTAAGGTTGCCAGGTCTGGTGTGAAGAAGAGGAACAGGCAGGCCATTAAGACACGCGGTAGGAAGTGA

Protein sequence

MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQAGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALAKLSAVHRSLKVARSGVKKRNRQAIKTRGRK

Homology

[Close]

BLAST of CmoCh12G013250 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.8e-52
Identity = 102/143 (71.33%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK+N+ FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
           A GKD  +++ TTKTK+QNKP   ++KSI +KEF RM K V NQV DNYYRPDLK AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CmoCh12G013250 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.8e-52
Identity = 102/143 (71.33%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
           A  KD ++++ATTKTKKQNKP   ++KSI +KEFPRM K V NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CmoCh12G013250 vs. ExPASy Swiss-Prot
Match: O14069 (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl44 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-13
Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 3   NVPGQLVWEIVKKNSSFLVK--EFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 62
           +V   L+W++++ N+ FLVK  EFG    G+QF++EP N+   N+ + SGL N K V +Q
Sbjct: 2   SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 61

Query: 63  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMV-KTVTNQVADNYYRPDLKNAAL 122
           A      +LI  T  K   KPA L  K +      R   K++  ++    YR DL   ++
Sbjct: 62  ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 121

Query: 123 AKLSAV 126
           A+ SA+
Sbjct: 122 ARASAI 123

[Close]

BLAST of CmoCh12G013250 vs. ExPASy Swiss-Prot
Match: Q3T0L7 (60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 40/123 (32.52%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 8   LVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQAGGKDLS 67
           L W +V+  SSFL+K   +      +S EPNNL   NS++++GL +RKTV ++       
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  ILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALAKLSAVHR 127
           +++   +   Q KPA+   ++   K     + ++ + +  N YRPDL+ AA+ + SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 122

Query: 128 SLK 131
           S K
Sbjct: 125 SQK 122

[Close]

BLAST of CmoCh12G013250 vs. ExPASy Swiss-Prot
Match: P17702 (60S ribosomal protein L28 OS=Rattus norvegicus OX=10116 GN=Rpl28 PE=1 SV=4)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-11
Identity = 45/134 (33.58%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 8   LVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQAGGKDLS 67
           L W +V+  SSFL+K   +      +S EPNNL   NS++++GL +RKTV ++A      
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKG 64

Query: 68  ILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALAKLSAVHR 127
           +++   +   Q KPA+   ++   K     + ++ + +  N YRPDL+ AA+ + SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 124

Query: 128 SLKVARSGVKKRNR 142
           S K     V KR R
Sbjct: 125 SQKPV---VVKRKR 130

[Close]

BLAST of CmoCh12G013250 vs. ExPASy TrEMBL
Match: A0A6J1FD25 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444289 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
           AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLSAVHRSLKVARSGVKKRNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of CmoCh12G013250 vs. ExPASy TrEMBL
Match: A0A6J1HQK6 (60S ribosomal protein L28-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465713 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.3e-72
Identity = 145/150 (96.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLY+LNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
           AGGKDLS+LIATTKTKKQNKPASLLHKSITRKEFPRM+KTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLSAVHRSLKVA+SGVK RNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 150

[Close]

BLAST of CmoCh12G013250 vs. ExPASy TrEMBL
Match: A0A6J1DMI9 (60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.0e-68
Identity = 135/150 (90.00%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKN+SFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
            GGKDLS+L+ATTK KKQNKPASLLH+S+ RKEFPRM K V NQVADNYYRPDLK AALA
Sbjct: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLS VHRSLKVA+SGVKKRNRQA+KTRGRK
Sbjct: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150

[Close]

BLAST of CmoCh12G013250 vs. ExPASy TrEMBL
Match: A0A6J1HSF8 (60S ribosomal protein L28-2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465713 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 134/139 (96.40%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLY+LNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
           AGGKDLS+LIATTKTKKQNKPASLLHKSITRKEFPRM+KTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVARSGVKKR 140
           KLSAVHRSLKVA+SGVK R
Sbjct: 121 KLSAVHRSLKVAKSGVKTR 139

[Close]

BLAST of CmoCh12G013250 vs. ExPASy TrEMBL
Match: A0A1S3CAX2 (60S ribosomal protein L28-1-like OS=Cucumis melo OX=3656 GN=LOC103498417 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 133/150 (88.67%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNA VQFSKEPNNLY+LNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 60

Query: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
            GGKDLS+L+AT+KTKKQNKPA+ LHKS+ RKEFPRM K VTNQVADNYYRPDLKNAALA
Sbjct: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLSAVHRSLKVA+SGVKK NRQA++TRGRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKGNRQAVRTRGRK 150

[Close]

BLAST of CmoCh12G013250 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 206.1 bits (523), Expect = 2.0e-53
Identity = 102/143 (71.33%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK+N+ FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
           A GKD  +++ TTKTK+QNKP   ++KSI +KEF RM K V NQV DNYYRPDLK AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CmoCh12G013250 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 206.1 bits (523), Expect = 2.0e-53
Identity = 102/143 (71.33%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK+N+ FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
           A GKD  +++ TTKTK+QNKP   ++KSI +KEF RM K V NQV DNYYRPDLK AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CmoCh12G013250 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 205.3 bits (521), Expect = 3.4e-53
Identity = 102/143 (71.33%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
           A  KD ++++ATTKTKKQNKP   ++KSI +KEFPRM K V NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CmoCh12G013250 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 205.3 bits (521), Expect = 3.4e-53
Identity = 102/143 (71.33%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
           A  KD ++++ATTKTKKQNKP   ++KSI +KEFPRM K V NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CmoCh12G013250 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 205.3 bits (521), Expect = 3.4e-53
Identity = 102/143 (71.33%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
           A  KD ++++ATTKTKKQNKP   ++KSI +KEFPRM K V NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

The following BLAST results are available for this feature:

BLAST of CmoCh12G013250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	2.8e-52	71.33	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	4.8e-52	71.33	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
O14069	4.4e-13	34.92	Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
Q3T0L7	1.1e-11	32.52	60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3	[more]
P17702	1.9e-11	33.58	60S ribosomal protein L28 OS=Rattus norvegicus OX=10116 GN=Rpl28 PE=1 SV=4	[more]

BLAST of CmoCh12G013250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FD25	1.6e-74	100.00	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444289 P...	[more]
A0A6J1HQK6	3.3e-72	96.67	60S ribosomal protein L28-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1DMI9	5.0e-68	90.00	60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 ...	[more]
A0A6J1HSF8	1.2e-66	96.40	60S ribosomal protein L28-2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3CAX2	1.6e-66	88.67	60S ribosomal protein L28-1-like OS=Cucumis melo OX=3656 GN=LOC103498417 PE=3 SV...	[more]

BLAST of CmoCh12G013250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29410.1	2.0e-53	71.33	Ribosomal L28e protein family	[more]
AT4G29410.2	2.0e-53	71.33	Ribosomal L28e protein family	[more]
AT2G19730.1	3.4e-53	71.33	Ribosomal L28e protein family	[more]
AT2G19730.2	3.4e-53	71.33	Ribosomal L28e protein family	[more]
AT2G19730.3	3.4e-53	71.33	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 4.6E-33 score: 114.3
None	No IPR available	GENE3D	3.30.390.110		coord: 6..133 e-value: 1.0E-42 score: 147.5
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..150
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G013250.1	CmoCh12G013250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005840	ribosome
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0003735	structural constituent of ribosome