CmoCh12G013060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G013060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	mitochondrial import inner membrane translocase subunit TIM17-2-like
Location	Cmo_Chr12: 11460265 .. 11460966 (+)
RNA-Seq Expression	CmoCh12G013060
Synteny	CmoCh12G013060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACGCCGGAAACTTCAAGGGAACCTTGCCCCGACCGCATCCTCGATGACATCGGCGGCGCTTTTGGCATGGGAGCCGTCGGCGGGTCAGCTTTTCACTTCATCAAAGGTCTATACAATTCTCCCAAGGGATCCAGGATTATCGGCGGCTCTCAAGCCGTCCGAATGAATGCGCCACGCGTTGGCGGAAGTTTCGCTGTTTGGGGTGGTTTATTCTCTGCTTTCGATTGTACAATGGTCTATGTCCGCCAGAAGGAGGATCCATGGAACTCGATCATCGCTGGCGCCGCCACCGGCGGTTTTCTTCAGATGCGACAGGGACCTGCATCAGCAGCTCGTTCTGCTGTTTTCGGCGGCGTTTTGTTAGCGTTGATTGAAGGAGCTGGGATTATGCTCAATAAAGTCCTCAGCCAGCAACAAAATATGCCTGTTGTCACGGAGGAGCCTGCTGGTATGGCTAGTGTACCTGGATATCCTACAGGCCAATTACCTGGCCGTGCTCCTCCCCTGTCTCTACCGCAAGCGGAGTTGACAAGCCTTTCTTCTTCGTCTTCTTCAGATTTTGGTAGTGATTCGTGGTTTGGAGGTTGGTTTGGTGGAGGCAAGAAGAAGGAATCTGCAGTGTCGAGTGGAGGAAGTGAGACAACGATTTTGGAAAGCTTTGATGCACCGCCTGTGCCAAATTTTGAGTTCAAATAA

mRNA sequence

ATGGGAACGCCGGAAACTTCAAGGGAACCTTGCCCCGACCGCATCCTCGATGACATCGGCGGCGCTTTTGGCATGGGAGCCGTCGGCGGGTCAGCTTTTCACTTCATCAAAGGTCTATACAATTCTCCCAAGGGATCCAGGATTATCGGCGGCTCTCAAGCCGTCCGAATGAATGCGCCACGCGTTGGCGGAAGTTTCGCTGTTTGGGGTGGTTTATTCTCTGCTTTCGATTGTACAATGGTCTATGTCCGCCAGAAGGAGGATCCATGGAACTCGATCATCGCTGGCGCCGCCACCGGCGGTTTTCTTCAGATGCGACAGGGACCTGCATCAGCAGCTCGTTCTGCTGTTTTCGGCGGCGTTTTGTTAGCGTTGATTGAAGGAGCTGGGATTATGCTCAATAAAGTCCTCAGCCAGCAACAAAATATGCCTGTTGTCACGGAGGAGCCTGCTGGTATGGCTAGTGTACCTGGATATCCTACAGGCCAATTACCTGGCCGTGCTCCTCCCCTGTCTCTACCGCAAGCGGAGTTGACAAGCCTTTCTTCTTCGTCTTCTTCAGATTTTGGTAGTGATTCGTGGTTTGGAGGTTGGTTTGGTGGAGGCAAGAAGAAGGAATCTGCAGTGTCGAGTGGAGGAAGTGAGACAACGATTTTGGAAAGCTTTGATGCACCGCCTGTGCCAAATTTTGAGTTCAAATAA

Coding sequence (CDS)

ATGGGAACGCCGGAAACTTCAAGGGAACCTTGCCCCGACCGCATCCTCGATGACATCGGCGGCGCTTTTGGCATGGGAGCCGTCGGCGGGTCAGCTTTTCACTTCATCAAAGGTCTATACAATTCTCCCAAGGGATCCAGGATTATCGGCGGCTCTCAAGCCGTCCGAATGAATGCGCCACGCGTTGGCGGAAGTTTCGCTGTTTGGGGTGGTTTATTCTCTGCTTTCGATTGTACAATGGTCTATGTCCGCCAGAAGGAGGATCCATGGAACTCGATCATCGCTGGCGCCGCCACCGGCGGTTTTCTTCAGATGCGACAGGGACCTGCATCAGCAGCTCGTTCTGCTGTTTTCGGCGGCGTTTTGTTAGCGTTGATTGAAGGAGCTGGGATTATGCTCAATAAAGTCCTCAGCCAGCAACAAAATATGCCTGTTGTCACGGAGGAGCCTGCTGGTATGGCTAGTGTACCTGGATATCCTACAGGCCAATTACCTGGCCGTGCTCCTCCCCTGTCTCTACCGCAAGCGGAGTTGACAAGCCTTTCTTCTTCGTCTTCTTCAGATTTTGGTAGTGATTCGTGGTTTGGAGGTTGGTTTGGTGGAGGCAAGAAGAAGGAATCTGCAGTGTCGAGTGGAGGAAGTGAGACAACGATTTTGGAAAGCTTTGATGCACCGCCTGTGCCAAATTTTGAGTTCAAATAA

Protein sequence

MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAPRVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGGVLLALIEGAGIMLNKVLSQQQNMPVVTEEPAGMASVPGYPTGQLPGRAPPLSLPQAELTSLSSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILESFDAPPVPNFEFK

Homology

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BLAST of CmoCh12G013060 vs. ExPASy Swiss-Prot
Match: Q9SP35 (Mitochondrial import inner membrane translocase subunit TIM17-2 OS=Arabidopsis thaliana OX=3702 GN=TIM17-2 PE=1 SV=2)

HSP 1 Score: 312.0 bits (798), Expect = 5.7e-84
Identity = 170/253 (67.19%), Postives = 188/253 (74.31%), Query Frame = 0


Query: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60
           MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKG YNSPKGSR +GG+Q+V MNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAP 60

Query: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120
           R GGSFAVWGGLFS FDCTMVY+RQKEDPWNSIIAGAATGGFL MRQG  +A+RSA+FGG
Sbjct: 61  RTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGG 120

Query: 121 VLLALIEGAGIMLNKVLSQQQNMPVVTEEPA--------GMASVPGYP------------ 180
           VLLALIEGAGIMLNKVL+Q QNM  + E+P         GM  +PG P            
Sbjct: 121 VLLALIEGAGIMLNKVLAQPQNM--MMEDPGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQ 180

Query: 181 TGQLPGRAPPLSLPQAELTSLSSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILE 234
            GQ+  +A   S  Q + T+ SSSSS      SWFGG F   KKKE       S+T +LE
Sbjct: 181 MGQMQSQAQIRSESQNQNTASSSSSS------SWFGGLF--DKKKEEVQPGSESKTEVLE 240

[Close]

BLAST of CmoCh12G013060 vs. ExPASy Swiss-Prot
Match: Q9LN27 (Mitochondrial import inner membrane translocase subunit TIM17-1 OS=Arabidopsis thaliana OX=3702 GN=TIM17-1 PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.2e-71
Identity = 142/233 (60.94%), Postives = 171/233 (73.39%), Query Frame = 0


Query: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60
           MGTPE+SREPCPDRILDD+GGAF MGAVGGSA+H I+G+YNSP G+R+ GG QA+RM+ P
Sbjct: 1   MGTPESSREPCPDRILDDVGGAFAMGAVGGSAYHLIRGIYNSPGGARLSGGVQALRMSGP 60

Query: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120
           R GGSF+VWGGL+S FDC +VY RQKEDPWNSI++GAATGGFL +RQG  ++ARSA+ GG
Sbjct: 61  RSGGSFSVWGGLYSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGLGASARSALVGG 120

Query: 121 VLLALIEGAGIMLNKVLSQQQNMPVVTEEPAGMASVPGYPTGQLPGRAPPLSLPQAELTS 180
           VLLA+IEG GIMLNKV S   N   + +  A   S+P Y  GQ+ G++ P          
Sbjct: 121 VLLAMIEGVGIMLNKVQSTAHNEQFMEDHAA--TSLP-YGMGQISGQSVP---------- 180

Query: 181 LSSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILESFDAPPVPNFEFK 234
           +  +SSS  GS SWFG  F   KKKE+      S T ILESFDAPPVP +EFK
Sbjct: 181 VPETSSSSSGSVSWFGSLF--KKKKETEDHHSESRTHILESFDAPPVPTYEFK 218

[Close]

BLAST of CmoCh12G013060 vs. ExPASy Swiss-Prot
Match: O60830 (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens OX=9606 GN=TIMM17B PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.4e-42
Identity = 89/167 (53.29%), Postives = 112/167 (67.07%), Query Frame = 0


Query: 5   ETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKG--SRIIGGSQAVRMNAPRV 64
           E +REPCP RI+DD GGAF MG +GG  F  IKG  N+P G   R+ G + AVR+ AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQI 62

Query: 65  GGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGGVL 124
           GGSFAVWGGLFS  DC +V +R KEDPWNSI +GA TG  L  R GP +   SA+ GG+L
Sbjct: 63  GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGIL 122

Query: 125 LALIEGAGIMLNKVLSQQ-QNMPVVTEEPAGM-----ASVPGYPTGQ 164
           LALIEG GI+L +  +QQ +N P   E+P+ +        PGYP+ Q
Sbjct: 123 LALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQ 169

[Close]

BLAST of CmoCh12G013060 vs. ExPASy Swiss-Prot
Match: Q9Z0V7 (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus OX=10090 GN=Timm17b PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.7e-41
Identity = 89/167 (53.29%), Postives = 110/167 (65.87%), Query Frame = 0


Query: 5   ETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKG--SRIIGGSQAVRMNAPRV 64
           E +REPCP RI+DD GGAF MG +GG  F  IKG  N+P G   R  G   AVR+ AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQI 62

Query: 65  GGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGGVL 124
           GGSFAVWGGLFS  DC +V +R KEDPWNSI +GA TG  L  R GP +   SA+ GG+L
Sbjct: 63  GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGGIL 122

Query: 125 LALIEGAGIMLNKVLSQQ-QNMPVVTEEPAGM-----ASVPGYPTGQ 164
           LALIEG GI+L +  +QQ +N P   E+P+ +     +  PGYP  Q
Sbjct: 123 LALIEGVGILLTRYTAQQFRNAPPFLEDPSQLTPKEGSPAPGYPNYQ 169

[Close]

BLAST of CmoCh12G013060 vs. ExPASy Swiss-Prot
Match: Q99595 (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens OX=9606 GN=TIMM17A PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.6e-41
Identity = 90/163 (55.21%), Postives = 108/163 (66.26%), Query Frame = 0


Query: 5   ETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKG--SRIIGGSQAVRMNAPRV 64
           E +REPCP RI+DD GGAF MG +GG  F  IKG  NSP G   R+ G   A++  AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQL 62

Query: 65  GGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGGVL 124
           GGSFAVWGGLFS  DC+MV VR KEDPWNSI +GA TG  L  R GP +   SA  GG+L
Sbjct: 63  GGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGIL 122

Query: 125 LALIEGAGIMLNKVLSQQ-QNMPVVTEEPAGMAS--VPGYPTG 163
           LALIEGAGI+L +  S Q  N P   E+P+ + S  +P  P G
Sbjct: 123 LALIEGAGILLTRFASAQFPNGPQFAEDPSQLPSTQLPSSPFG 165

[Close]

BLAST of CmoCh12G013060 vs. ExPASy TrEMBL
Match: A0A6J1FJ92 (mitochondrial import inner membrane translocase subunit TIM17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444400 PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.1e-127
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60
           MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120
           RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120

Query: 121 VLLALIEGAGIMLNKVLSQQQNMPVVTEEPAGMASVPGYPTGQLPGRAPPLSLPQAELTS 180
           VLLALIEGAGIMLNKVLSQQQNMPVVTEEPAGMASVPGYPTGQLPGRAPPLSLPQAELTS
Sbjct: 121 VLLALIEGAGIMLNKVLSQQQNMPVVTEEPAGMASVPGYPTGQLPGRAPPLSLPQAELTS 180

Query: 181 LSSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILESFDAPPVPNFEFK 234
           LSSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILESFDAPPVPNFEFK
Sbjct: 181 LSSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILESFDAPPVPNFEFK 233

[Close]

BLAST of CmoCh12G013060 vs. ExPASy TrEMBL
Match: A0A6J1HQB6 (mitochondrial import inner membrane translocase subunit TIM17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111465652 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.1e-125
Identity = 229/233 (98.28%), Postives = 231/233 (99.14%), Query Frame = 0


Query: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60
           MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120
           RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120

Query: 121 VLLALIEGAGIMLNKVLSQQQNMPVVTEEPAGMASVPGYPTGQLPGRAPPLSLPQAELTS 180
           VLLALIEGAGIMLNKVLSQQQNMPVVTEEPAGMASVPGYPTGQLPGRA PLSLPQAELTS
Sbjct: 121 VLLALIEGAGIMLNKVLSQQQNMPVVTEEPAGMASVPGYPTGQLPGRATPLSLPQAELTS 180

Query: 181 LSSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILESFDAPPVPNFEFK 234
           +SSSSSSD GSDSWFGGWFGGGKKKESAVSSGGSETTILESFDAPPVPNFE+K
Sbjct: 181 ISSSSSSDSGSDSWFGGWFGGGKKKESAVSSGGSETTILESFDAPPVPNFEYK 233

[Close]

BLAST of CmoCh12G013060 vs. ExPASy TrEMBL
Match: A0A5A7V4X7 (Mitochondrial import inner membrane translocase subunit TIM17-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00870 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 3.9e-120
Identity = 221/235 (94.04%), Postives = 226/235 (96.17%), Query Frame = 0


Query: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60
           MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGG+QAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGTQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120
           RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSA+FGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSALFGG 120

Query: 121 VLLALIEGAGIMLNKVLSQQQNMPVVTEEPAGMASVPGYPTGQLPGRAPPLSLPQAELTS 180
           VLLALIEGAGIMLNKVLSQQQNMPVV EEPAGM  VPGYPTGQLPGRAPP+SLPQAEL S
Sbjct: 121 VLLALIEGAGIMLNKVLSQQQNMPVVIEEPAGMGGVPGYPTGQLPGRAPPMSLPQAELAS 180

Query: 181 L--SSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILESFDAPPVPNFEFK 234
           +  SSSSSSD G+ SWFGGWFGGGKKKES VSSGGSETTILESFDAPPVPNFEFK
Sbjct: 181 ISSSSSSSSDSGNGSWFGGWFGGGKKKESEVSSGGSETTILESFDAPPVPNFEFK 235

[Close]

BLAST of CmoCh12G013060 vs. ExPASy TrEMBL
Match: A0A1S3C8A4 (mitochondrial import inner membrane translocase subunit TIM17-2-like OS=Cucumis melo OX=3656 GN=LOC103498112 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 3.9e-120
Identity = 221/235 (94.04%), Postives = 226/235 (96.17%), Query Frame = 0


Query: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60
           MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGG+QAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGTQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120
           RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSA+FGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSALFGG 120

Query: 121 VLLALIEGAGIMLNKVLSQQQNMPVVTEEPAGMASVPGYPTGQLPGRAPPLSLPQAELTS 180
           VLLALIEGAGIMLNKVLSQQQNMPVV EEPAGM  VPGYPTGQLPGRAPP+SLPQAEL S
Sbjct: 121 VLLALIEGAGIMLNKVLSQQQNMPVVIEEPAGMGGVPGYPTGQLPGRAPPMSLPQAELAS 180

Query: 181 L--SSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILESFDAPPVPNFEFK 234
           +  SSSSSSD G+ SWFGGWFGGGKKKES VSSGGSETTILESFDAPPVPNFEFK
Sbjct: 181 ISSSSSSSSDSGNGSWFGGWFGGGKKKESEVSSGGSETTILESFDAPPVPNFEFK 235

[Close]

BLAST of CmoCh12G013060 vs. ExPASy TrEMBL
Match: A0A5D3CGV0 (Mitochondrial import inner membrane translocase subunit TIM17-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00580 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.5e-119
Identity = 221/240 (92.08%), Postives = 226/240 (94.17%), Query Frame = 0


Query: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60
           MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGG+QAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGTQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120
           RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSA+FGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSALFGG 120

Query: 121 VLLALIEGAGIMLNKVLSQQQNMPVVTEEPAGMASVPGYPTGQLPGRAPPLSLPQAELTS 180
           VLLALIEGAGIMLNKVLSQQQNMPVV EEPAGM  VPGYPTGQLPGRAPP+SLPQAEL S
Sbjct: 121 VLLALIEGAGIMLNKVLSQQQNMPVVIEEPAGMGGVPGYPTGQLPGRAPPMSLPQAELAS 180

Query: 181 L-------SSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILESFDAPPVPNFEFK 234
           +       SSSSSSD G+ SWFGGWFGGGKKKES VSSGGSETTILESFDAPPVPNFEFK
Sbjct: 181 ISSSSSSSSSSSSSDSGNGSWFGGWFGGGKKKESEVSSGGSETTILESFDAPPVPNFEFK 240

[Close]

BLAST of CmoCh12G013060 vs. TAIR 10
Match: AT2G37410.1 (translocase inner membrane subunit 17-2 )

HSP 1 Score: 312.0 bits (798), Expect = 4.1e-85
Identity = 170/253 (67.19%), Postives = 188/253 (74.31%), Query Frame = 0


Query: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60
           MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKG YNSPKGSR +GG+Q+V MNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAP 60

Query: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120
           R GGSFAVWGGLFS FDCTMVY+RQKEDPWNSIIAGAATGGFL MRQG  +A+RSA+FGG
Sbjct: 61  RTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGG 120

Query: 121 VLLALIEGAGIMLNKVLSQQQNMPVVTEEPA--------GMASVPGYP------------ 180
           VLLALIEGAGIMLNKVL+Q QNM  + E+P         GM  +PG P            
Sbjct: 121 VLLALIEGAGIMLNKVLAQPQNM--MMEDPGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQ 180

Query: 181 TGQLPGRAPPLSLPQAELTSLSSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILE 234
            GQ+  +A   S  Q + T+ SSSSS      SWFGG F   KKKE       S+T +LE
Sbjct: 181 MGQMQSQAQIRSESQNQNTASSSSSS------SWFGGLF--DKKKEEVQPGSESKTEVLE 240

[Close]

BLAST of CmoCh12G013060 vs. TAIR 10
Match: AT2G37410.2 (translocase inner membrane subunit 17-2 )

HSP 1 Score: 312.0 bits (798), Expect = 4.1e-85
Identity = 170/253 (67.19%), Postives = 188/253 (74.31%), Query Frame = 0


Query: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60
           MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKG YNSPKGSR +GG+Q+V MNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAP 60

Query: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120
           R GGSFAVWGGLFS FDCTMVY+RQKEDPWNSIIAGAATGGFL MRQG  +A+RSA+FGG
Sbjct: 61  RTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGG 120

Query: 121 VLLALIEGAGIMLNKVLSQQQNMPVVTEEPA--------GMASVPGYP------------ 180
           VLLALIEGAGIMLNKVL+Q QNM  + E+P         GM  +PG P            
Sbjct: 121 VLLALIEGAGIMLNKVLAQPQNM--MMEDPGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQ 180

Query: 181 TGQLPGRAPPLSLPQAELTSLSSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILE 234
            GQ+  +A   S  Q + T+ SSSSS      SWFGG F   KKKE       S+T +LE
Sbjct: 181 MGQMQSQAQIRSESQNQNTASSSSSS------SWFGGLF--DKKKEEVQPGSESKTEVLE 240

[Close]

BLAST of CmoCh12G013060 vs. TAIR 10
Match: AT1G20350.1 (translocase inner membrane subunit 17-1 )

HSP 1 Score: 269.2 bits (687), Expect = 3.0e-72
Identity = 142/233 (60.94%), Postives = 171/233 (73.39%), Query Frame = 0


Query: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60
           MGTPE+SREPCPDRILDD+GGAF MGAVGGSA+H I+G+YNSP G+R+ GG QA+RM+ P
Sbjct: 1   MGTPESSREPCPDRILDDVGGAFAMGAVGGSAYHLIRGIYNSPGGARLSGGVQALRMSGP 60

Query: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120
           R GGSF+VWGGL+S FDC +VY RQKEDPWNSI++GAATGGFL +RQG  ++ARSA+ GG
Sbjct: 61  RSGGSFSVWGGLYSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGLGASARSALVGG 120

Query: 121 VLLALIEGAGIMLNKVLSQQQNMPVVTEEPAGMASVPGYPTGQLPGRAPPLSLPQAELTS 180
           VLLA+IEG GIMLNKV S   N   + +  A   S+P Y  GQ+ G++ P          
Sbjct: 121 VLLAMIEGVGIMLNKVQSTAHNEQFMEDHAA--TSLP-YGMGQISGQSVP---------- 180

Query: 181 LSSSSSSDFGSDSWFGGWFGGGKKKESAVSSGGSETTILESFDAPPVPNFEFK 234
           +  +SSS  GS SWFG  F   KKKE+      S T ILESFDAPPVP +EFK
Sbjct: 181 VPETSSSSSGSVSWFGSLF--KKKKETEDHHSESRTHILESFDAPPVPTYEFK 218

[Close]

BLAST of CmoCh12G013060 vs. TAIR 10
Match: AT5G11690.1 (translocase inner membrane subunit 17-3 )

HSP 1 Score: 151.4 bits (381), Expect = 9.2e-37
Identity = 73/126 (57.94%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPKGSRIIGGSQAVRMNAP 60
           M T + S+E    RI++ IG AFG GAVGGS +HF++G YNSP G+R +GG+QA  MNAP
Sbjct: 1   MDTKKKSKEHGLYRIVNAIGYAFGAGAVGGSVYHFVRGAYNSPIGARYVGGTQAASMNAP 60

Query: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGG 120
           R+GG+FAV+GGL S FD  +V +R+KEDPWNSI+AGAATGG L +R+G  +A+ SAV  G
Sbjct: 61  RLGGTFAVFGGLLSTFDYALVRIRKKEDPWNSIVAGAATGGVLSIRKGVVAASTSAVMFG 120

Query: 121 VLLALI 127
             LA++
Sbjct: 121 FFLAVL 126

[Close]

BLAST of CmoCh12G013060 vs. TAIR 10
Match: AT1G17530.1 (translocase of inner mitochondrial membrane 23 )

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05
Identity = 33/110 (30.00%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 20  GGAFGMGAVGGSAFHFIKGLYNSPKG-------SRIIGGS-QAVRMNAPRVGGSFAVWGG 79
           G  +  G+V G++     G+ +   G       +RI+  S QA R    RVG    + G 
Sbjct: 64  GTGYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVG----IVGL 123

Query: 80  LFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSAVFGGV 122
           +++  +  +V V  K+D W S++AG  TG   +  +G  SAA +  FGG+
Sbjct: 124 IYAGIESGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGI 169

The following BLAST results are available for this feature:

BLAST of CmoCh12G013060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SP35	5.7e-84	67.19	Mitochondrial import inner membrane translocase subunit TIM17-2 OS=Arabidopsis t...	[more]
Q9LN27	4.2e-71	60.94	Mitochondrial import inner membrane translocase subunit TIM17-1 OS=Arabidopsis t...	[more]
O60830	5.4e-42	53.29	Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens ...	[more]
Q9Z0V7	2.7e-41	53.29	Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus ...	[more]
Q99595	4.6e-41	55.21	Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens ...	[more]

BLAST of CmoCh12G013060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJ92	1.1e-127	100.00	mitochondrial import inner membrane translocase subunit TIM17-2-like OS=Cucurbit...	[more]
A0A6J1HQB6	3.1e-125	98.28	mitochondrial import inner membrane translocase subunit TIM17-2-like OS=Cucurbit...	[more]
A0A5A7V4X7	3.9e-120	94.04	Mitochondrial import inner membrane translocase subunit TIM17-2-like OS=Cucumis ...	[more]
A0A1S3C8A4	3.9e-120	94.04	mitochondrial import inner membrane translocase subunit TIM17-2-like OS=Cucumis ...	[more]
A0A5D3CGV0	1.5e-119	92.08	Mitochondrial import inner membrane translocase subunit TIM17-2-like OS=Cucumis ...	[more]

BLAST of CmoCh12G013060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37410.1	4.1e-85	67.19	translocase inner membrane subunit 17-2	[more]
AT2G37410.2	4.1e-85	67.19	translocase inner membrane subunit 17-2	[more]
AT1G20350.1	3.0e-72	60.94	translocase inner membrane subunit 17-1	[more]
AT5G11690.1	9.2e-37	57.94	translocase inner membrane subunit 17-3	[more]
AT1G17530.1	1.1e-05	30.00	translocase of inner mitochondrial membrane 23	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 16..122 e-value: 2.9E-28 score: 98.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..189
None	No IPR available	PANTHER	PTHR10485	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17	coord: 1..233
None	No IPR available	PANTHER	PTHR10485:SF23	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM17-2-LIKE	coord: 1..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G013060.1	CmoCh12G013060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex
molecular_function	GO:0008320	protein transmembrane transporter activity