CmoCh12G012870 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAATCCATTTCCATTACGGTTCAAGCTTAAGGAGGTCTTCAATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAAAGATCTTCATCTTCTGATCAATCTCCGTTTAAATCGACTCGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTGAGATTCCTCTCTTTTATTCATTTCCAATCTCATTCGTCATACCGTCACAGAATCATTAGTCACGGAACGAAATTCTGTTCAATTTCTTACTGGAGAATAGATTTTTGCAATAGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTGATGCCACTGCACAGTGCCATAGCTGCAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGTACGTTTTGCCTAAGTTTCTTCTAGCACTTGGTTTTAGTGAATGCCGGTGTTTCTCTATAATGTTGGAGGTTTTATAACTTTTAGGATCTGATCATAATTCGGGTCAAGTTCAATGCATATGTCTTGTGGAATGCCAGTACGGCTGAAGAAATCTGCCTTTGCTACTTGAAGGAAAACATCACCTTTACTGGTTTATGAAGGAAACAACCCGAATGATGCAACCAACTTTAGTATTTGAACCAAAGTTTAACATAACTGATCATATACGAGATGGAGCCATAGTCTTATGCACAATTTTAGCACTAATCTGGTTTTTTGTAATAGCCCAAACCTATCACTAGTAGATATTGTTCGCATCAGCCTCACGGTTTTAAAACGCATCTACTAGGGAGAGATTTCCACACCCTTATAAGGAATGTTTCATTCTCCTCTCCAACCGATGTGGGATCTTTCAATCCACCCCATTGGGGCCCAACATCCTCGTTGGCGCACCGCCTGGTGTCTGACTCTGATACCATTTGTAACAGCTCAAGCCTACCGCTAGTAGATATTGTCCGTTTTGGCCCGTTACGTATCGCCGTTAGTCTCATGGTTTTAAAACGCGTCTATTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCATTCTACTCTCCAACCGATGTAGGACATTTCAACCAAAGTTGAACATAGCTGACCATATATGAGATGGAGCCATAGGTTTATGTGTTGGCTCTTCTAATTTATCACCAAGCTTCAAAAGATACCCAAGTGATGTAGTTTTGAACTTAGTTGATGGTGGATAATTTTTCTGATCTTCAATTTATGTGCAACCATCAACAGCTTTTGTGATGCATATCTCAATTGTAGTGTCATTGCATCATTTTTATTCTATCTCACAGTGAAAACAAAACTACCTGAAGAAAGTAATCTACTTGATATGTTTTGTTCATTGTAAAGTGTAATCAATACTAACTTCCAATGGCTAGAAGTTGGTAGCATCATTGTTCCTTGCCCCTCTTGCGCCTGAACCCTCATAATGTATGCTGGTCTTGGGTGGGCAAGATGATAATGACCCCTTGTTCGTTCTCTGCTGGTTCACTGGGAAGTTTTTGGGATTTTTATTTGGTTCGTATGGACTTGAGTGGCATTTCCGAAAGCTGAGGGTTCTGTACTTCAGATGTTACTACGTTCAAATTTCAGAAACCAGATTAAATTGATTCTAGATTGCTTATCTTTGTAAGGCTTGGAAAATGAAAATAATAGGAAGTTTCACGGAAATTGAGATAATCAAATTTTTGGTATCTTATTGTCTCTTAAACTTTGGTTAGATGTCGTGTACTCTGTCTCCTCTCTTATATATTCATTACAGTATTCGTAATACTGAGTTTCTTTTGAAAATACAACCTTTTCCCAGAAATAAACACTGATAGGAACTTTTGTGCTCGATAAATTTGAGGAGAGTGTGAATGTAGAGGGTAAGAAAAATCATTTAGGGGCGTTTAAGGCATGAGTTGAGCATCTTTAAGCTTGGGTTTAGTAAGTCTAGGGGGTTAAATTAAAGGTTTGGGAAGCCTGGTTAAGGAAAATGGGGTTGGGATGCAGCTTTAGAAAGCATAGGTTTAGGAACACAGTCTCAGAGTATGTTGTCGCTCAAACTCATTGATTTCTCCAATAAAATTATGTTTTGGAAACTCCTCATCCTAAACATTGGTTAGGCTTAGGAAGCCAAATCCATGCCCCAAACGCCCCTTTACAGGTGTTACAAATGTCTTGGAAACTCCTCATCCTAAAATTATCTTTGTCCTTTGATCCGAATAAGTTGTTACCAATGTCTTCTGCATTAGTTCTATGGGAGAAAGTTGTGTATGCAAGTTTATACCCATCATTTGAAGTAGTTTCATGCGCGATAATTTATTGTAAGAGAACCATCTTTGACGTTGTTTTGTCTTTCCTGCAGGTATTTCAATGCCTTTATGA AAATCCATTTCCATTACGGTTCAAGCTTAAGGAGGTCTTCAATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAAAGATCTTCATCTTCTGATCAATCTCCGTTTAAATCGACTCGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTGATGCCACTGCACAGTGCCATAGCTGCAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGTATTTCAATGCCTTTATGA ATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAAAGATCTTCATCTTCTGATCAATCTCCGTTTAAATCGACTCGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTGATGCCACTGCACAGTGCCATAGCTGCAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGTATTTCAATGCCTTTATGA MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL Homology
BLAST of CmoCh12G012870 vs. ExPASy TrEMBL
Match: A0A6J1FCN7 (uncharacterized protein LOC111444407 OS=Cucurbita moschata OX=3662 GN=LOC111444407 PE=4 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 3.8e-40 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
BLAST of CmoCh12G012870 vs. ExPASy TrEMBL
Match: A0A6J1HLX3 (uncharacterized protein LOC111465737 OS=Cucurbita maxima OX=3661 GN=LOC111465737 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 3.9e-37 Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0
BLAST of CmoCh12G012870 vs. ExPASy TrEMBL
Match: A0A6J1G399 (uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC111450380 PE=4 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31 Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0
BLAST of CmoCh12G012870 vs. ExPASy TrEMBL
Match: A0A6J1DYI4 (uncharacterized protein LOC111024217 OS=Momordica charantia OX=3673 GN=LOC111024217 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 3.2e-31 Identity = 84/99 (84.85%), Postives = 89/99 (89.90%), Query Frame = 0
BLAST of CmoCh12G012870 vs. ExPASy TrEMBL
Match: A0A6J1KDE2 (uncharacterized protein LOC111493876 OS=Cucurbita maxima OX=3661 GN=LOC111493876 PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 5.5e-31 Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 0
BLAST of CmoCh12G012870 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 88.6 bits (218), Expect = 3.1e-18 Identity = 58/101 (57.43%), Postives = 75/101 (74.26%), Query Frame = 0
BLAST of CmoCh12G012870 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 79.7 bits (195), Expect = 1.4e-15 Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 0
BLAST of CmoCh12G012870 vs. TAIR 10
Match: AT3G13674.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14 Identity = 52/101 (51.49%), Postives = 74/101 (73.27%), Query Frame = 0
BLAST of CmoCh12G012870 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04 Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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