CmoCh12G012870 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G012870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionProtein NUCLEAR FUSION DEFECTIVE 6
LocationCmo_Chr12: 11360629 .. 11363049 (-)
RNA-Seq ExpressionCmoCh12G012870
SyntenyCmoCh12G012870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCCATTTCCATTACGGTTCAAGCTTAAGGAGGTCTTCAATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAAAGATCTTCATCTTCTGATCAATCTCCGTTTAAATCGACTCGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTGAGATTCCTCTCTTTTATTCATTTCCAATCTCATTCGTCATACCGTCACAGAATCATTAGTCACGGAACGAAATTCTGTTCAATTTCTTACTGGAGAATAGATTTTTGCAATAGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTGATGCCACTGCACAGTGCCATAGCTGCAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGTACGTTTTGCCTAAGTTTCTTCTAGCACTTGGTTTTAGTGAATGCCGGTGTTTCTCTATAATGTTGGAGGTTTTATAACTTTTAGGATCTGATCATAATTCGGGTCAAGTTCAATGCATATGTCTTGTGGAATGCCAGTACGGCTGAAGAAATCTGCCTTTGCTACTTGAAGGAAAACATCACCTTTACTGGTTTATGAAGGAAACAACCCGAATGATGCAACCAACTTTAGTATTTGAACCAAAGTTTAACATAACTGATCATATACGAGATGGAGCCATAGTCTTATGCACAATTTTAGCACTAATCTGGTTTTTTGTAATAGCCCAAACCTATCACTAGTAGATATTGTTCGCATCAGCCTCACGGTTTTAAAACGCATCTACTAGGGAGAGATTTCCACACCCTTATAAGGAATGTTTCATTCTCCTCTCCAACCGATGTGGGATCTTTCAATCCACCCCATTGGGGCCCAACATCCTCGTTGGCGCACCGCCTGGTGTCTGACTCTGATACCATTTGTAACAGCTCAAGCCTACCGCTAGTAGATATTGTCCGTTTTGGCCCGTTACGTATCGCCGTTAGTCTCATGGTTTTAAAACGCGTCTATTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCATTCTACTCTCCAACCGATGTAGGACATTTCAACCAAAGTTGAACATAGCTGACCATATATGAGATGGAGCCATAGGTTTATGTGTTGGCTCTTCTAATTTATCACCAAGCTTCAAAAGATACCCAAGTGATGTAGTTTTGAACTTAGTTGATGGTGGATAATTTTTCTGATCTTCAATTTATGTGCAACCATCAACAGCTTTTGTGATGCATATCTCAATTGTAGTGTCATTGCATCATTTTTATTCTATCTCACAGTGAAAACAAAACTACCTGAAGAAAGTAATCTACTTGATATGTTTTGTTCATTGTAAAGTGTAATCAATACTAACTTCCAATGGCTAGAAGTTGGTAGCATCATTGTTCCTTGCCCCTCTTGCGCCTGAACCCTCATAATGTATGCTGGTCTTGGGTGGGCAAGATGATAATGACCCCTTGTTCGTTCTCTGCTGGTTCACTGGGAAGTTTTTGGGATTTTTATTTGGTTCGTATGGACTTGAGTGGCATTTCCGAAAGCTGAGGGTTCTGTACTTCAGATGTTACTACGTTCAAATTTCAGAAACCAGATTAAATTGATTCTAGATTGCTTATCTTTGTAAGGCTTGGAAAATGAAAATAATAGGAAGTTTCACGGAAATTGAGATAATCAAATTTTTGGTATCTTATTGTCTCTTAAACTTTGGTTAGATGTCGTGTACTCTGTCTCCTCTCTTATATATTCATTACAGTATTCGTAATACTGAGTTTCTTTTGAAAATACAACCTTTTCCCAGAAATAAACACTGATAGGAACTTTTGTGCTCGATAAATTTGAGGAGAGTGTGAATGTAGAGGGTAAGAAAAATCATTTAGGGGCGTTTAAGGCATGAGTTGAGCATCTTTAAGCTTGGGTTTAGTAAGTCTAGGGGGTTAAATTAAAGGTTTGGGAAGCCTGGTTAAGGAAAATGGGGTTGGGATGCAGCTTTAGAAAGCATAGGTTTAGGAACACAGTCTCAGAGTATGTTGTCGCTCAAACTCATTGATTTCTCCAATAAAATTATGTTTTGGAAACTCCTCATCCTAAACATTGGTTAGGCTTAGGAAGCCAAATCCATGCCCCAAACGCCCCTTTACAGGTGTTACAAATGTCTTGGAAACTCCTCATCCTAAAATTATCTTTGTCCTTTGATCCGAATAAGTTGTTACCAATGTCTTCTGCATTAGTTCTATGGGAGAAAGTTGTGTATGCAAGTTTATACCCATCATTTGAAGTAGTTTCATGCGCGATAATTTATTGTAAGAGAACCATCTTTGACGTTGTTTTGTCTTTCCTGCAGGTATTTCAATGCCTTTATGA

mRNA sequence

AAATCCATTTCCATTACGGTTCAAGCTTAAGGAGGTCTTCAATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAAAGATCTTCATCTTCTGATCAATCTCCGTTTAAATCGACTCGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTGATGCCACTGCACAGTGCCATAGCTGCAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGTATTTCAATGCCTTTATGA

Coding sequence (CDS)

ATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAAAGATCTTCATCTTCTGATCAATCTCCGTTTAAATCGACTCGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTGATGCCACTGCACAGTGCCATAGCTGCAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGTATTTCAATGCCTTTATGA

Protein sequence

MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
Homology
BLAST of CmoCh12G012870 vs. ExPASy TrEMBL
Match: A0A6J1FCN7 (uncharacterized protein LOC111444407 OS=Cucurbita moschata OX=3662 GN=LOC111444407 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.8e-40
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELS 60
           MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELS
Sbjct: 1   MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL 100
           SQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
Sbjct: 61  SQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL 99

BLAST of CmoCh12G012870 vs. ExPASy TrEMBL
Match: A0A6J1HLX3 (uncharacterized protein LOC111465737 OS=Cucurbita maxima OX=3661 GN=LOC111465737 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.9e-37
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0

Query: 1   MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELS 60
           MASL+AVSR+SSRLHSLASKLNKRSSSSD SPFKST QSRLSAPSTSRLSCTSRLPLELS
Sbjct: 1   MASLRAVSRISSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL 100
           SQGSLMPLHSAIA+ARLISSL IESRGWGLVPQGISMPL
Sbjct: 61  SQGSLMPLHSAIASARLISSLTIESRGWGLVPQGISMPL 99

BLAST of CmoCh12G012870 vs. ExPASy TrEMBL
Match: A0A6J1G399 (uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC111450380 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELS 60
           MASL+AVSRLSSRL SLA KLNKRS SS+ SPFKS  QS+ SA STSR+SCTSRLPLELS
Sbjct: 1   MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL 100
           SQGSLMPLHSAIAAARLISSL+IES+GWGLVPQGISMPL
Sbjct: 61  SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGISMPL 99

BLAST of CmoCh12G012870 vs. ExPASy TrEMBL
Match: A0A6J1DYI4 (uncharacterized protein LOC111024217 OS=Momordica charantia OX=3673 GN=LOC111024217 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.2e-31
Identity = 84/99 (84.85%), Postives = 89/99 (89.90%), Query Frame = 0

Query: 1   MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELS 60
           MASLKAVSRLSSRLHSLA KL K+  SS+ SP KS+ QS+ SA STSR+SCTSRLPLELS
Sbjct: 1   MASLKAVSRLSSRLHSLAPKLKKKFPSSEPSPLKSSCQSKPSAASTSRISCTSRLPLELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL 100
           SQGSLMPLHSAIAAARLISSL IESRGWGLVPQGISMPL
Sbjct: 61  SQGSLMPLHSAIAAARLISSLTIESRGWGLVPQGISMPL 99

BLAST of CmoCh12G012870 vs. ExPASy TrEMBL
Match: A0A6J1KDE2 (uncharacterized protein LOC111493876 OS=Cucurbita maxima OX=3661 GN=LOC111493876 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.5e-31
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELS 60
           MASL+AVSRLSSRL SLA KLNKRS SS+ SPFKS+ QS+ SA S SR+SCTSRLPLELS
Sbjct: 1   MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASISRVSCTSRLPLELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL 100
           SQGSLMPLHSAIAAARLISSL+IES+GWGLVPQGISMPL
Sbjct: 61  SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGISMPL 99

BLAST of CmoCh12G012870 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-18
Identity = 58/101 (57.43%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 1   MASLKAVSRLSSRLHSLASKLNKRS--SSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLE 60
           MAS   + RLSS++HSL  KL+K +   SS  SP KS+  S     +TSR++ + RLP+E
Sbjct: 1   MASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKSSSPS----SATSRINQSFRLPVE 60

Query: 61  LSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL 100
           LS   S++PLHSAIA+ARLISSL++ES+ WGLVPQGISMPL
Sbjct: 61  LSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQGISMPL 97

BLAST of CmoCh12G012870 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-15
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 0

Query: 1  MASLKAVSRLSSRLHSLASKLNKRS--SSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLE 60
          MAS   + RLSS++HSL  KL+K +   SS  SP KS+  S     +TSR++ + RLP+E
Sbjct: 1  MASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKSSSPS----SATSRINQSFRLPVE 60

Query: 61 LSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGIS 97
          LS   S++PLHSAIA+ARLISSL++ES+ WGLVPQG S
Sbjct: 61 LSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQGQS 94

BLAST of CmoCh12G012870 vs. TAIR 10
Match: AT3G13674.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 52/101 (51.49%), Postives = 74/101 (73.27%), Query Frame = 0

Query: 1   MASLKAVSRLSSRLHSLASKLNKRSS--SSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLE 60
           MAS + + R SSRL SL   L+ +++  SS  SP KS      S+ ++ RL+ +SRLP+E
Sbjct: 1   MASSRVLGRFSSRLKSLCQNLSNKNANVSSLPSPIKSASP---SSATSCRLNRSSRLPVE 60

Query: 61  LSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL 100
           LS   S++PLHSAIA++RL+SSL++ES+ WGLVPQG+S+PL
Sbjct: 61  LS---SMIPLHSAIASSRLVSSLSVESKIWGLVPQGLSLPL 95

BLAST of CmoCh12G012870 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 0

Query: 2   ASLKAVSR-LSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELS 61
           ++L A SR L SR  ++  K      ++  SPF S  QS         +   SR+   L 
Sbjct: 7   SALMAGSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQS---------IPRASRVLSALG 66

Query: 62  SQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL 100
           S  +++PLHSA+A+ARL SS+A +S  W L+ QG++ PL
Sbjct: 67  SVETMIPLHSAVASARLRSSIAADSSCWSLLSQGLATPL 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FCN73.8e-40100.00uncharacterized protein LOC111444407 OS=Cucurbita moschata OX=3662 GN=LOC1114444... [more]
A0A6J1HLX33.9e-3793.94uncharacterized protein LOC111465737 OS=Cucurbita maxima OX=3661 GN=LOC111465737... [more]
A0A6J1G3991.4e-3185.86uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC1114503... [more]
A0A6J1DYI43.2e-3184.85uncharacterized protein LOC111024217 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1KDE25.5e-3184.85uncharacterized protein LOC111493876 OS=Cucurbita maxima OX=3661 GN=LOC111493876... [more]
Match NameE-valueIdentityDescription
AT1G55205.13.1e-1857.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G55205.21.4e-1555.10unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G13674.11.2e-1451.49unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G39300.11.9e-0437.37unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..47
NoneNo IPR availablePANTHERPTHR33156:SF43BNAANNG28360D PROTEINcoord: 1..99
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G012870.1CmoCh12G012870.1mRNA