CmoCh12G012780 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G012780
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr12: 11311260 .. 11311570 (+)
RNA-Seq ExpressionCmoCh12G012780
SyntenyCmoCh12G012780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCCGAAAGCTTTTCACCGTTTTCGCTATTGTCATGATGATGTTCTATTTTGCTTCATCGGGTAAGTGTTTTTATCTTCCCATCTTTTTAATTCTATGTTCTTTTGTTGTTTTCTTTTGCTAAAATAATATTTAATCCTTGCAGCAAAAGGCGACATGTTCATGGAATGTATTCGTCCGTGTGTTGATGCTTTCGACGATGATTCGTGTTATGATGATTGTGTTCGTGCAAATAAAGGTGCTGGGTTTTGTTATCCTAAACTACCTTCTGTTTCGAATGAAAAGGATTGTTGTTGTAATAATTGA

mRNA sequence

ATGGCATCCCGAAAGCTTTTCACCGTTTTCGCTATTGTCATGATGATGTTCTATTTTGCTTCATCGGCAAAAGGCGACATGTTCATGGAATGTATTCGTCCGTGTGTTGATGCTTTCGACGATGATTCGTGTTATGATGATTGTGTTCGTGCAAATAAAGGTGCTGGGTTTTGTTATCCTAAACTACCTTCTGTTTCGAATGAAAAGGATTGTTGTTGTAATAATTGA

Coding sequence (CDS)

ATGGCATCCCGAAAGCTTTTCACCGTTTTCGCTATTGTCATGATGATGTTCTATTTTGCTTCATCGGCAAAAGGCGACATGTTCATGGAATGTATTCGTCCGTGTGTTGATGCTTTCGACGATGATTCGTGTTATGATGATTGTGTTCGTGCAAATAAAGGTGCTGGGTTTTGTTATCCTAAACTACCTTCTGTTTCGAATGAAAAGGATTGTTGTTGTAATAATTGA

Protein sequence

MASRKLFTVFAIVMMMFYFASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCYPKLPSVSNEKDCCCNN
Homology
[Close]
BLAST of CmoCh12G012780 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.8e-16
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 0 

Query: 1  MASRKLFTVFAIVMMMF-YFASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60
          MA++KL T+  +V+M+F   AS+ KGD+  + C+RPC D +DD+SCY+DC++ N GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSVSNEKDCCCN 75
          YPKLP  S +KDCCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

[Close]
BLAST of CmoCh12G012780 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.5e-16
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 1  MASRKLFTVFAIVMMMF-YFASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60
          MA++KL T+  +V+++F    S+ KGD+  + C+RPC D +DD+SCY+DC+R N GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSVSNEKDCCCNN 76
          YPKLP  S +KDCCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

[Close]
BLAST of CmoCh12G012780 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 22 SAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFCYPKLPSVSNEKDCCCN 75
          +AKGD+  + C+RPC D +DD+SCY+DC+R N GAGFCYPKLP  S +KDCCCN
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCN 53

[Close]
BLAST of CmoCh12G012780 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-09
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 0 

Query: 1  MASRKLFTVFAIVMMMF-YFASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCY 60
          M ++KLF V  +V + F  FASS +GD    C+ PC +   D  C   C+  ++GAGFC 
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPSVSNEKDCCCNN 76
          PKLP +S+ K CCCNN
Sbjct: 61 PKLPGISDMKVCCCNN 76

The following BLAST results are available for this feature:
BLAST of CmoCh12G012780 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh12G012780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHG93.8e-1656.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG56.5e-1654.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF51.0e-1364.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0L1R82.6e-0946.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
BLAST of CmoCh12G012780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G012780.1CmoCh12G012780.1mRNA