CmoCh12G012770 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTATAGTTTTGATCTTCTGATTTGTATTTAAATTGTGGAAGATACTGATATATCCTAGAATGGCAACATCATCATGTTTATAATGTGATTAACAAATCTTTTGCTCTTTTAAATACTTGAATTTCCATACTTCTTGCAGTCTGCAGATATGGCCTCCAATGGCAGCCTTAGCGTTGTGGTTTCCGCATCTCCTAAACACGACAATAGAGATGCTGAGACCATGAGGTCCAGTTCGCCGAAAGGCCAGTGTTTGTGCTCGCCCACGATGCACCAAGGCTCCTTTAGGTGTCGGCTTCATCGTTCGACATCGTCGGCGTGGATGAAACGATCAAAATCAATGCCTGCCAACAAGCCTGTGGCGTCTCTTTCTCCTAAGGAAACTCTTGGATCTTCCTAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTATAGTTTTGATCTTCTGATTTGTATTTAAATTGTGGAAGATACTGATATATCCTAGAATGGCAACATCATCATGTTTATAATGTGATTAACAAATCTTTTGCTCTTTTAAATACTTGAATTTCCATACTTCTTGCAGTCTGCAGATATGGCCTCCAATGGCAGCCTTAGCGTTGTGGTTTCCGCATCTCCTAAACACGACAATAGAGATGCTGAGACCATGAGGTCCAGTTCGCCGAAAGGCCAGTGTTTGTGCTCGCCCACGATGCACCAAGGCTCCTTTAGGTGTCGGCTTCATCGTTCGACATCGTCGGCGTGGATGAAACGATCAAAATCAATGCCTGCCAACAAGCCTGTGGCGTCTCTTTCTCCTAAGGAAACTCTTGGATCTTCCTAA ATGGCCTCCAATGGCAGCCTTAGCGTTGTGGTTTCCGCATCTCCTAAACACGACAATAGAGATGCTGAGACCATGAGGTCCAGTTCGCCGAAAGGCCAGTGTTTGTGCTCGCCCACGATGCACCAAGGCTCCTTTAGGTGTCGGCTTCATCGTTCGACATCGTCGGCGTGGATGAAACGATCAAAATCAATGCCTGCCAACAAGCCTGTGGCGTCTCTTTCTCCTAAGGAAACTCTTGGATCTTCCTAA MASNGSLSVVVSASPKHDNRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPANKPVASLSPKETLGSS Homology
BLAST of CmoCh12G012770 vs. ExPASy TrEMBL
Match: A0A5D3CHP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00230 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 9.2e-32 Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0
BLAST of CmoCh12G012770 vs. ExPASy TrEMBL
Match: A0A5A7V1X5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001200 PE=4 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31 Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0
BLAST of CmoCh12G012770 vs. ExPASy TrEMBL
Match: A0A6J1G498 (uncharacterized protein LOC111450652 OS=Cucurbita moschata OX=3662 GN=LOC111450652 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 6.0e-31 Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0
BLAST of CmoCh12G012770 vs. ExPASy TrEMBL
Match: A0A0A0LKU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004705 PE=4 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 1.0e-30 Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0
BLAST of CmoCh12G012770 vs. ExPASy TrEMBL
Match: A0A061GNT6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037897 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 4.9e-17 Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = 0
BLAST of CmoCh12G012770 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related ) HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06 Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 0
BLAST of CmoCh12G012770 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05 Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0
BLAST of CmoCh12G012770 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). ) HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05 Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0
BLAST of CmoCh12G012770 vs. TAIR 10
Match: AT3G56500.1 (serine-rich protein-related ) HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04 Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 0
BLAST of CmoCh12G012770 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 42.0 bits (97), Expect = 2.8e-04 Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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