CmoCh12G012770 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G012770
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPeroxiredoxins prx-1 prx-2 prx-3
LocationCmo_Chr12: 11305177 .. 11305612 (-)
RNA-Seq ExpressionCmoCh12G012770
SyntenyCmoCh12G012770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTATAGTTTTGATCTTCTGATTTGTATTTAAATTGTGGAAGATACTGATATATCCTAGAATGGCAACATCATCATGTTTATAATGTGATTAACAAATCTTTTGCTCTTTTAAATACTTGAATTTCCATACTTCTTGCAGTCTGCAGATATGGCCTCCAATGGCAGCCTTAGCGTTGTGGTTTCCGCATCTCCTAAACACGACAATAGAGATGCTGAGACCATGAGGTCCAGTTCGCCGAAAGGCCAGTGTTTGTGCTCGCCCACGATGCACCAAGGCTCCTTTAGGTGTCGGCTTCATCGTTCGACATCGTCGGCGTGGATGAAACGATCAAAATCAATGCCTGCCAACAAGCCTGTGGCGTCTCTTTCTCCTAAGGAAACTCTTGGATCTTCCTAA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTATAGTTTTGATCTTCTGATTTGTATTTAAATTGTGGAAGATACTGATATATCCTAGAATGGCAACATCATCATGTTTATAATGTGATTAACAAATCTTTTGCTCTTTTAAATACTTGAATTTCCATACTTCTTGCAGTCTGCAGATATGGCCTCCAATGGCAGCCTTAGCGTTGTGGTTTCCGCATCTCCTAAACACGACAATAGAGATGCTGAGACCATGAGGTCCAGTTCGCCGAAAGGCCAGTGTTTGTGCTCGCCCACGATGCACCAAGGCTCCTTTAGGTGTCGGCTTCATCGTTCGACATCGTCGGCGTGGATGAAACGATCAAAATCAATGCCTGCCAACAAGCCTGTGGCGTCTCTTTCTCCTAAGGAAACTCTTGGATCTTCCTAA

Coding sequence (CDS)

ATGGCCTCCAATGGCAGCCTTAGCGTTGTGGTTTCCGCATCTCCTAAACACGACAATAGAGATGCTGAGACCATGAGGTCCAGTTCGCCGAAAGGCCAGTGTTTGTGCTCGCCCACGATGCACCAAGGCTCCTTTAGGTGTCGGCTTCATCGTTCGACATCGTCGGCGTGGATGAAACGATCAAAATCAATGCCTGCCAACAAGCCTGTGGCGTCTCTTTCTCCTAAGGAAACTCTTGGATCTTCCTAA

Protein sequence

MASNGSLSVVVSASPKHDNRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPANKPVASLSPKETLGSS
Homology
BLAST of CmoCh12G012770 vs. ExPASy TrEMBL
Match: A0A5D3CHP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00230 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.2e-32
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0

Query: 1  MASNGSLSVVVSASPKHDNRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MAS+GSL V VS+SPKH NRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSSSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPANKPVASLSPKETLGSS 83
          SKSMPAN PVASLSPK +LGSS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

BLAST of CmoCh12G012770 vs. ExPASy TrEMBL
Match: A0A5A7V1X5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001200 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1  MASNGSLSVVVSASPKHDNRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MAS+GSL V VS SPKH NRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSTSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPANKPVASLSPKETLGSS 83
          SKSMPAN PVASLSPK +LGSS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

BLAST of CmoCh12G012770 vs. ExPASy TrEMBL
Match: A0A6J1G498 (uncharacterized protein LOC111450652 OS=Cucurbita moschata OX=3662 GN=LOC111450652 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.0e-31
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0

Query: 1   MASNGSLSVVVSASPKHDNRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
           MAS+GSLSVVVS SPKH NRDAET+RSSSPKGQCLCSPTMHQGSFRCRLHRS SSAWMKR
Sbjct: 43  MASDGSLSVVVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSMSSAWMKR 102

Query: 61  SKSMPANKPVASLSPKETLGSS 83
           SKSMPA+ PVASLS KE+LGSS
Sbjct: 103 SKSMPADHPVASLSSKESLGSS 124

BLAST of CmoCh12G012770 vs. ExPASy TrEMBL
Match: A0A0A0LKU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004705 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.0e-30
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1  MASNGSLSVVVSASPKHDNRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MAS+GSLSV VS SPKH NRDAET+RS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPANKPVASLSPKETLGSS 83
          SKSMP N PVASLSPKE+L SS
Sbjct: 61 SKSMPTNNPVASLSPKESLESS 82

BLAST of CmoCh12G012770 vs. ExPASy TrEMBL
Match: A0A061GNT6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037897 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.9e-17
Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = 0

Query: 1  MASNGSLSVVVSASPKHDNRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MAS+G  ++ VS SPK  N +A    +S   GQCLCSPT HQGSFRCR HRS+SSAWMKR
Sbjct: 1  MASHG--NITVSTSPKGSNSEAAVPTNSPKGGQCLCSPTTHQGSFRCRFHRSSSSAWMKR 60

Query: 61 SKSMPANKPVASLSPK 77
          SKSMPAN  +ASLSPK
Sbjct: 61 SKSMPANGSLASLSPK 74

BLAST of CmoCh12G012770 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 0

Query: 26 RSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPAN 68
          +SSS +  CLC+PT H GSFRCR HR  +   M R  S+P+N
Sbjct: 57 KSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSN 98

BLAST of CmoCh12G012770 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 26 RSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPA 67
          ++S  K  CLCSPT H GSFRCR+HRS S   ++R+KS+ A
Sbjct: 36 QTSMTKTNCLCSPTTHPGSFRCRIHRSLS---LQRTKSIEA 73

BLAST of CmoCh12G012770 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 26 RSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPA 67
          ++S  K  CLCSPT H GSFRCR+HRS S   ++R+KS+ A
Sbjct: 36 QTSMTKTNCLCSPTTHPGSFRCRIHRSLS---LQRTKSIEA 73

BLAST of CmoCh12G012770 vs. TAIR 10
Match: AT3G56500.1 (serine-rich protein-related )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 31  KGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPANKPVAS 73
           K  C+C+PT H+GSFRCRLHRS++++    +  +   KP+ S
Sbjct: 62  KTVCICAPTKHEGSFRCRLHRSSATSHGAATAELHLPKPLLS 103

BLAST of CmoCh12G012770 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 2.8e-04
Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 26 RSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPAN 68
          ++S  K  C+CSPT H GSF+C+LHR+ S   ++R+KS+  N
Sbjct: 24 QTSITKTICICSPTTHPGSFKCKLHRTPS---LQRNKSVETN 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CHP39.2e-3290.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V1X51.2e-3190.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J1G4986.0e-3189.02uncharacterized protein LOC111450652 OS=Cucurbita moschata OX=3662 GN=LOC1114506... [more]
A0A0A0LKU31.0e-3087.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004705 PE=4 SV=1[more]
A0A061GNT64.9e-1767.11Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037897 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G13227.11.3e-0652.38serine-rich protein-related [more]
AT1G67910.11.5e-0556.10unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G67910.21.5e-0556.10unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G56500.11.2e-0445.24serine-rich protein-related [more]
AT1G24577.12.8e-0447.62unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR33132:SF37SERINE-RICH PROTEIN-LIKE PROTEINcoord: 1..77
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G012770.1CmoCh12G012770.1mRNA