CmoCh12G012740 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G012740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA mismatch repair protein
Location	Cmo_Chr12: 11295815 .. 11300062 (-)
RNA-Seq Expression	CmoCh12G012740
Synteny	CmoCh12G012740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGCCTCCTACATTAGCCTGCGGTTCACTCGCTTTCCGGCGAAACAAAGCTTTGTCGGTTTGGAGCAGTTTGATATCCAAACCACCGCGGATTCCTCCCAGGAGATTAAGGAACCGACGCTCCACTGGAGAAGGTGTCTTGGAAGATTTTTCGATGGAGAAGAATAGAGGCTCTTCTCTCTTTTCGAGCATCATGCATAGATTTGTGAGAGTAGACGATAAACGCAAGGCGGACGAGAGGTAATGTTGAAGCTAAACTAACTAAGCCAATGCGTTTTTGGATTTCTAGTCGATATGATAGACTACATTCTGTGTTCTCCATTCGTATCTTGTAGAATACTGTTTCTGTAACATTGTTGCATCGCCGTCTCTAGTTTTTGTAAAAATCAAATGCATTATAGACATGCTTTTCAATTTCGTAGATCGTTCTATGATTGAGTTGCATTTTATTATGTCTTAGTGAATCCTAGAGACGAGGTTAAAAAATATTCATATCAGAACGAGGTTCGGAAAGGTTCTTCTTAGTTACGTTGCATTTCTTCTGCCGATATTAGATCCAAAAGAAATTCCAAAACTAGAGGTAGCTTCTATACATTGCAAATTTAAACGGACGTTGAACACCTGTCTAGAATATTGAAAGCGACGATGACCTTGTTGGACTCGAAACACCAGGCATGCGACCTTCTGTATCCCGTTCGAAGAGATCTCAATAGGTTTATCTCGAGGATTGGTAAAACTACCAAAATAGTTAAACTCCTTCATTACAAAATGAACTTGGCCAATATTCTCAATGAAGTTTCTGATGCAACCAGCAAACCTCTCAAATCAAAGATTCTAATGGTAGAAAGGCTGGCTATCCTCTTTATAATGATAAAACACTATACATACCAACTGATGTGCTGAAGAAAATGTGTCAGCGGTTTGTTTATATTGTCCAACAGTATCATTGCATGAATTAGCTCCTGAAATTGATATATGTCTTTACTCTGAATAATTGTCGATTTCATTTTACCATGCTAAATTAGTGTATCTCCACAATTTGCAACCATATGAATTATTAATATCATTTGTACAAAGGTTAATTTGGAACGGTAATCTAAATGAGTTTTGTTATCCAGGATTTGGTTTTAATCGTTGAAATGATAATAAGTTTTAATCCATTTTGGATCCATTTGAAGCAGAGATGAAAAGAAAGAAAGAAGAAAATGGTGAATATGAATCTAGGAATAGGAATAGTAGTCTTCACCTTTTTAATGGCCGACATTTTCTCCAAATTCAGGAATCGTTCTTGACTTTTGATTGAGATTTATATTTTCTGTGCTTTCTTCTAAGCACATGCACTGATAGATTAATAAGGTACAGAACATATTTTTCTCTATCTTAGTCACGATCCTCCCTCTTATACTTTGGTTATACTCCTAGGAGACTTTGCTTTGGTTGGTGGATGCTTTTCAATGTGTAATTGTACACTACCTTTATTTCATAAATCTAAGATTATGAAATCTCTTTTGCACATCTCAGGGCAAGTTCTATGAGCTTTATGAACAAGATGCTGAAATCGGTCACAAGGAGCTTGACTGGAAAATGACATTAAGTGGCGTTGGGAAATGCAGGCAGGTTAGATAAAATTCTAACACTTGTTTTTACCAGTCTATCTATTTCTTCATCTTTTAAGTTATGCATATACCAACGATATCCCAAAAGCTCGTTGCATGAGAGTAAGGATGTTGAGAACTCTGTCGTTTTGTTGATGATGTATCTGTAGAGAGAGCAAAGGGGACCAAACAGAAAATGAGTGAACCAGGGACATTATAGCTTAATAAAAACCTTCATGCAAATTTACATTAGCATGATGTTTTTGTGCTATTTATTTTGAGCATGTAAGGTGAGGCTAACACTTTTCTGTGACAATCTTTATGAAGATGTAAAGTTGGGCGAATTGAGCAGTTGGAATCTTCGGATCAAACAAAAACCAGATGTGCAAATTCTGTAAGTATGTTACTTCAGATAATATACGGATATTGATTCTGCATATTTAATGGTCGCAAATTTATGGCTGCCAGTGATATTGATTCTGCATATTCATTGGTCGCAAATATACGGATATTGATTCTGCATTTTCCCATCCAGTTTGTTGGAAAAACGACTATTGTGGTTCTAAATAACTTAAATTGTCCCTTTCCCTTTCAGTTTTGGGTTCGAGGCTCAGTTATTTCTCTTATCTGTTCTTTTTCAAAATTATAAAAGTTCTCAGTTAATCAGCAGTTTGAGGGATCTATTCCGGGGAATTAACATATTAAATCTCATTGCTTTTATTGATTGGGCTGCTTTCAATTTTTGGACTGGTTCTATCCATTATGGTGCTTCCTGTGCTGCTCTGGGCACTCTCTTGATGCAATTAGGCAATTCAAATTGTCCATTTTTGCATTTCTGTTATTTGCTTCTGCAAATATGATAGTAATATGTACATTTGTGGTTTCTCTAGGTGCCTCCAAAAGAAATAATATATGAATCTCGTGGTGAGTCTTTCCTCTCCACCTCGGACTTTAGGTTTTCATTTAATTGATTGATATATTTATCTTCGGAAAATTTTACCTCAACTTCCACAATTTATTGTTTGTTGGACTATCTTAAGAAACACAAAGTTCTCAAGAAATACTTGCCAACTGGTTGGTTCTTTTTGTGTCTTTATAATAGAAAACTTATTTTGAAGAGTGAAAAGGTCGCGTTTTTTCTTTTTATTTATCACGTGTCATACATATGTCTTTCCTCTTTTTCTAATGTCAAATTCCTAGTGGTTAGTGTTCACTTGTACTAACTATTTATTCAATTATTAAGTTACTGAAATTCTATTATACATTGTTCTAAAATCATGAGATTTAAATTGAACGTGATTGACTTTTGGTGAACTGAAATGCATATTTATGTGTTTTGATGTATTTGCTTTGTATTGACCATGGGTTTCTCGAGTATCTCTTATGTTCTTGTTAACGACGAGGGAGTTGTTTGGAAGTGGGTTGAAAAATAGCCTTGGTTTCACCATGTTTGAGCTATAATGGTTATATTCTCCACGTTCTTATTCTACTCATCCTGCAGGTTCCACTGCTCTAGAATCCACATCAGGGTCAACACTTCAGGTTTTCTAGAAGCTTCAGATGCTAAAACTTCTGATTCATACAAATGAAAGCACATTCCATGATGACATTGATCTATGTGCTCTTGGAGGGCTTATTAATCACGTCGAGTCTGATGGTAAATTTGTCTTATCATATAACTGTTGCGATTAATGACTTCCGCTTCTAAACCGACCCGAACTGATTTCCTTGTTGAATGTTCAGAAACAGCTTCAGCTCTTCAACATGCTACTCAAGATTCTCTTGTTATTCCTGATGAACTTGGCCGTGGAACTGGCGCCTTCAATGGCTATGCCATTGCCTATGCTGTAAGTATCCCTTTTGATTCGTCTCCTTGACGATTATTCTTGAGCATAAAATTTTCGACCGTACCAGTAATTTCTTTCTAGTTTATATGTTTACTAAATTATAGATAGAAGAAATTAACTTGTTCAATATTTTATTAATTTTTCTTATCTAGGAGTAATTTAAAAATATTTATGAAAAGTCATTTTGAAAAGTATGTAATAGAGTTCAAGATGTTTTTCTGAAAGTTTTGAACATTTAAGACATGTCATTGAAAAGTTGTATAAACTCGAAATTAACTTTATCTATAAATTGTTTCATCAGGTGCGTCCCCATCTCATTGAAAAGGTGAACTGTCGACTGCTATTTGCTACTCACTACCACCCTCTAACAAAGGAGTTTGCCTCTCATCCTCACGTCATGCTTCAACACATGGCCTGCACATTCAAGGGCCAAGAGCTGGTTTTTCTAGACCGCCTTCGCCATGGTACGGGCTGCAAGTAGCAACAGTGGCTGGAATTTCAGGTCGAGCTCTTGAAGCAGCTTCAAGAAAACCATCAGAGAGAACTTCAGATTGAGCGAACGACGATTGGAGTTACCACTCTTCATGAAGAGTGGTTGAAAACTCTAATCACAGTCTCCGAGTTTCAAGGTAACAATCTTTACGATAATGATGCTTTTTATACATTATTTCGTTTATGGTATAAGCGTAAGAGATCGTATCAGTCCAAGGTTAGTATAATCTTTAATGATTTTGTGGTATTATTTTAAGTCCTTTAGTCTGTGGGGGCTTATATTTTGTACAGAAAAAACTGGCAGGCTAA

mRNA sequence

ATGGCGGTGCCTCCTACATTAGCCTGCGGTTCACTCGCTTTCCGGCGAAACAAAGCTTTGTCGGTTTGGAGCAGTTTGATATCCAAACCACCGCGGATTCCTCCCAGGAGATTAAGGAACCGACGCTCCACTGGAGAAGGTGTCTTGGAAGATTTTTCGATGGAGAAGAATAGAGGCTCTTCTCTCTTTTCGAGCATCATGCATAGATTTGTGAGAGTAGACGATAAACGCAAGGCGGACGAGAGAATATTGAAAGCGACGATGACCTTGTTGGACTCGAAACACCAGGCATGCGACCTTCTGTATCCCGTTCGAAGAGATCTCAATAGGTTTATCTCGAGGATTGGTAAAACTACCAAAATAGTTAAACTCCTTCATTACAAAATGAACTTGGCCAATATTCTCAATGAAGTTTCTGATGCAACCAGCAAACCTCTCAAATCAAAGATTCTAATGGGCAAGTTCTATGAGCTTTATGAACAAGATGCTGAAATCGGTCACAAGGAGCTTGACTGGAAAATGACATTAAGTGGCGTTGGGAAATGCAGGCAGGTGCCTCCAAAAGAAATAATATATGAATCTCGTGGTTCCACTGCTCTAGAATCCACATCAGGGTCAACACTTCAGATGCTAAAACTTCTGATTCATACAAATGAAAGCACATTCCATGATGACATTGATCTATGTGCTCTTGGAGGGCTTATTAATCACGTCGAGTCTGATGAAACAGCTTCAGCTCTTCAACATGCTACTCAAGATTCTCTTGTTATTCCTGATGAACTTGGCCGTGGAACTGGCGCCTTCAATGGCTATGCCATTGCCTATGCTGTGCGTCCCCATCTCATTGAAAAGGTGAACTGTCGACTGCTATTTGCTACTCACTACCACCCTCTAACAAAGGAGTTTGCCTCTCATCCTCACGTCATGCTTCAACACATGGCCTGCACATTCAAGGGCCAAGAGCTGGTCGAGCTCTTGAAGCAGCTTCAAGAAAACCATCAGAGAGAACTTCAGATTGAGCGAACGACGATTGGAGTTACCACTCTTCATGAAGAGTGGTTGAAAACTCTAATCACAGTCTCCGAGTTTCAAGTCTGTGGGGGCTTATATTTTGTACAGAAAAAACTGGCAGGCTAA

Coding sequence (CDS)

ATGGCGGTGCCTCCTACATTAGCCTGCGGTTCACTCGCTTTCCGGCGAAACAAAGCTTTGTCGGTTTGGAGCAGTTTGATATCCAAACCACCGCGGATTCCTCCCAGGAGATTAAGGAACCGACGCTCCACTGGAGAAGGTGTCTTGGAAGATTTTTCGATGGAGAAGAATAGAGGCTCTTCTCTCTTTTCGAGCATCATGCATAGATTTGTGAGAGTAGACGATAAACGCAAGGCGGACGAGAGAATATTGAAAGCGACGATGACCTTGTTGGACTCGAAACACCAGGCATGCGACCTTCTGTATCCCGTTCGAAGAGATCTCAATAGGTTTATCTCGAGGATTGGTAAAACTACCAAAATAGTTAAACTCCTTCATTACAAAATGAACTTGGCCAATATTCTCAATGAAGTTTCTGATGCAACCAGCAAACCTCTCAAATCAAAGATTCTAATGGGCAAGTTCTATGAGCTTTATGAACAAGATGCTGAAATCGGTCACAAGGAGCTTGACTGGAAAATGACATTAAGTGGCGTTGGGAAATGCAGGCAGGTGCCTCCAAAAGAAATAATATATGAATCTCGTGGTTCCACTGCTCTAGAATCCACATCAGGGTCAACACTTCAGATGCTAAAACTTCTGATTCATACAAATGAAAGCACATTCCATGATGACATTGATCTATGTGCTCTTGGAGGGCTTATTAATCACGTCGAGTCTGATGAAACAGCTTCAGCTCTTCAACATGCTACTCAAGATTCTCTTGTTATTCCTGATGAACTTGGCCGTGGAACTGGCGCCTTCAATGGCTATGCCATTGCCTATGCTGTGCGTCCCCATCTCATTGAAAAGGTGAACTGTCGACTGCTATTTGCTACTCACTACCACCCTCTAACAAAGGAGTTTGCCTCTCATCCTCACGTCATGCTTCAACACATGGCCTGCACATTCAAGGGCCAAGAGCTGGTCGAGCTCTTGAAGCAGCTTCAAGAAAACCATCAGAGAGAACTTCAGATTGAGCGAACGACGATTGGAGTTACCACTCTTCATGAAGAGTGGTTGAAAACTCTAATCACAGTCTCCGAGTTTCAAGTCTGTGGGGGCTTATATTTTGTACAGAAAAAACTGGCAGGCTAA

Protein sequence

MAVPPTLACGSLAFRRNKALSVWSSLISKPPRIPPRRLRNRRSTGEGVLEDFSMEKNRGSSLFSSIMHRFVRVDDKRKADERILKATMTLLDSKHQACDLLYPVRRDLNRFISRIGKTTKIVKLLHYKMNLANILNEVSDATSKPLKSKILMGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQVPPKEIIYESRGSTALESTSGSTLQMLKLLIHTNESTFHDDIDLCALGGLINHVESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHPLTKEFASHPHVMLQHMACTFKGQELVELLKQLQENHQRELQIERTTIGVTTLHEEWLKTLITVSEFQVCGGLYFVQKKLAG

Homology

[Close]

BLAST of CmoCh12G012740 vs. ExPASy Swiss-Prot
Match: Q9SMV7 (DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana OX=3702 GN=MSH7 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.8e-29
Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 238 VESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHP 297
           VE  ETAS LQ+ATQDSLVI DELGRGT  F+GYAIAY+V  HL+EKV CR+LFATHYHP
Sbjct: 911 VECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYHP 970

Query: 298 LTKEFASHPHVMLQHMACTFKGQ 321
           LTKEFASHP V  +HMAC FK +
Sbjct: 971 LTKEFASHPRVTSKHMACAFKSR 993

HSP 2 Score: 71.6 bits (174), Expect = 2.1e-11
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 152 MGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQV 186
           +GKFYELYE DAE+GHKELDWKMT+SGVGKCRQV
Sbjct: 290 VGKFYELYELDAELGHKELDWKMTMSGVGKCRQV 323

[Close]

BLAST of CmoCh12G012740 vs. ExPASy Swiss-Prot
Match: E1BYJ2 (DNA mismatch repair protein Msh6 OS=Gallus gallus OX=9031 GN=MSH6 PE=3 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 4.4e-17
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 238  VESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHP 297
            VE  ET+S LQHAT+ SLV+ DELGRGT  F+G AIA AV   L E + CR LF+THYH 
Sbjct: 1169 VELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHS 1228

Query: 298  LTKEFASHPHVMLQHMACTFKGQ 321
            L ++++    V L HMAC  + +
Sbjct: 1229 LVEDYSGSAAVRLGHMACMVENE 1251

[Close]

BLAST of CmoCh12G012740 vs. ExPASy Swiss-Prot
Match: P52701 (DNA mismatch repair protein Msh6 OS=Homo sapiens OX=9606 GN=MSH6 PE=1 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-16
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 238  VESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHP 297
            VE  ETAS L HAT  SLV+ DELGRGT  F+G AIA AV   L E + CR LF+THYH 
Sbjct: 1192 VELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS 1251

Query: 298  LTKEFASHPHVMLQHMACTFKGQ 321
            L ++++ +  V L HMAC  + +
Sbjct: 1252 LVEDYSQNVAVRLGHMACMVENE 1274

[Close]

BLAST of CmoCh12G012740 vs. ExPASy Swiss-Prot
Match: P54276 (DNA mismatch repair protein Msh6 OS=Mus musculus OX=10090 GN=Msh6 PE=1 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 2.2e-16
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 238  VESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHP 297
            VE  ETAS L+HAT  SLV+ DELGRGT  F+G AIA AV   L E + CR LF+THYH 
Sbjct: 1190 VELSETASILRHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS 1249

Query: 298  LTKEFASHPHVMLQHMACTFKGQ 321
            L ++++    V L HMAC  + +
Sbjct: 1250 LVEDYSKSVCVRLGHMACMVENE 1272

[Close]

BLAST of CmoCh12G012740 vs. ExPASy Swiss-Prot
Match: O04716 (DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana OX=3702 GN=MSH6 PE=1 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 3.1e-15
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 239  ESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHPL 298
            E  ETA  L  AT++SLV+ DELGRGT   +G AIA +V  H IEKV CR  F+THYH L
Sbjct: 1142 ELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRL 1201

Query: 299  TKEFASHPHVMLQHMAC 316
            + ++ ++P V L HMAC
Sbjct: 1202 SVDYQTNPKVSLCHMAC 1218

[Close]

BLAST of CmoCh12G012740 vs. ExPASy TrEMBL
Match: A0A5D3CFZ1 (DNA mismatch repair protein MSH7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00200 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.7e-38
Identity = 95/160 (59.38%), Postives = 105/160 (65.62%), Query Frame = 0


Query: 238  VESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHP 297
            VE  ETAS LQHATQDSLVI DELGRGT  F+GYAIAYAV  HLIEKVNCRLLFATHYHP
Sbjct: 909  VECSETASVLQHATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHP 968

Query: 298  LTKEFASHPHVMLQHMACTFKGQELVELLK----------------------QLQENHQR 357
            LTKEFASHPHVMLQHMACTF  QEL+ L +                      ++ E   R
Sbjct: 969  LTKEFASHPHVMLQHMACTFNDQELIFLYRLRSGACPESYGLKVATMAGIPGRVVEAASR 1028

Query: 358  ELQIERTTI-----------GVTTLHEEWLKTLITVSEFQ 365
              Q+ + TI             +TLHEEWLKTLIT+SEF+
Sbjct: 1029 ASQMMKQTIKENFKSSEQRSEFSTLHEEWLKTLITISEFK 1068

[Close]

BLAST of CmoCh12G012740 vs. ExPASy TrEMBL
Match: A0A5D3CFZ1 (DNA mismatch repair protein MSH7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00200 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-17
Identity = 83/249 (33.33%), Postives = 101/249 (40.56%), Query Frame = 0


Query: 53  SMEKNRGSSLFSSIMHRFVRVDDKRKADER-----------------------------I 112
           ++EKNRGSSLFSSIMH+FVRVDDKRKA+ER                              
Sbjct: 76  AIEKNRGSSLFSSIMHKFVRVDDKRKANERDGVQEDSYQNEVGKDSPQLPSIYGKVNDPT 135

Query: 113 LKATMTLLDSKHQAC-------------------DLLYPVRRDLNRFISRIGK------- 172
             + + +   +H                      D+  P    +   ISR+ +       
Sbjct: 136 EFSKLDVASRRHGKFDIANLNGHRGPVLNIESDEDIAEPETPGMRPSISRLKRSQEVSLV 195

Query: 173 ---------TTKIVKLLHYKMNLANILNEVSDATSK-------------------PLKSK 186
                    +TK +KLL   +NL  I NE+SDATSK                   PL  K
Sbjct: 196 NCSGDSLQDSTKRIKLLQDSINLKKIHNEISDATSKFEWLNPSQVRDANRRRPDHPLYDK 255

HSP 2 Score: 168.7 bits (426), Expect = 4.7e-38
Identity = 95/160 (59.38%), Postives = 105/160 (65.62%), Query Frame = 0


Query: 238  VESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHP 297
            VE  ETAS LQHATQDSLVI DELGRGT  F+GYAIAYAV  HLIEKVNCRLLFATHYHP
Sbjct: 935  VECSETASVLQHATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHP 994

Query: 298  LTKEFASHPHVMLQHMACTFKGQELVELLK----------------------QLQENHQR 357
            LTKEFASHPHVMLQHMACTF  QEL+ L +                      ++ E   R
Sbjct: 995  LTKEFASHPHVMLQHMACTFNDQELIFLYRLRSGACPESYGLKVATMAGIPGRVVEAASR 1054

Query: 358  ELQIERTTI-----------GVTTLHEEWLKTLITVSEFQ 365
              Q+ + TI             +TLHEEWLKTLIT+SEF+
Sbjct: 1055 ASQMMKQTIKENFKSSEQRSEFSTLHEEWLKTLITISEFK 1094

[Close]

BLAST of CmoCh12G012740 vs. ExPASy TrEMBL
Match: A0A5A7V751 (DNA mismatch repair protein MSH7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001230 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-16
Identity = 83/249 (33.33%), Postives = 100/249 (40.16%), Query Frame = 0


Query: 53  SMEKNRGSSLFSSIMHRFVRVDDKRKADER-----------ILKATMTL----------- 112
           ++EKNRGSSLFSSIMH+FVRVDDKRKA+ER           + K +  L           
Sbjct: 76  AIEKNRGSSLFSSIMHKFVRVDDKRKANERDGVQEDSYQNEVGKDSPQLPSIYGKVNDPT 135

Query: 113 -----------------------------LDSKHQACDLLYPVRRDLNRFISR------- 172
                                        ++S     +   P  R     + R       
Sbjct: 136 EFSKLDVASRRHGKFDIANLNGHRGPVLNIESDEDIAEPETPGMRPSISCLKRSQEVSLV 195

Query: 173 ------IGKTTKIVKLLHYKMNLANILNEVSDATSK-------------------PLKSK 186
                 +  +TK +KLL   +NL  I NE+SDATSK                   PL  K
Sbjct: 196 ICSGDSLQDSTKRIKLLQDSINLKKIHNEISDATSKFEWLNPSQVRDANRRRPDHPLYDK 255

HSP 2 Score: 168.7 bits (426), Expect = 4.7e-38
Identity = 95/160 (59.38%), Postives = 105/160 (65.62%), Query Frame = 0


Query: 238  VESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHP 297
            VE  ETAS LQHATQDSLVI DELGRGT  F+GYAIAYAV  HLIEKVNCRLLFATHYHP
Sbjct: 909  VECSETASVLQHATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHP 968

Query: 298  LTKEFASHPHVMLQHMACTFKGQELVELLK----------------------QLQENHQR 357
            LTKEFASHPHVMLQHMACTF  QEL+ L +                      ++ E   R
Sbjct: 969  LTKEFASHPHVMLQHMACTFNDQELIFLYRLRSGACPESYGLKVATMAGIPGRVVEAASR 1028

Query: 358  ELQIERTTI-----------GVTTLHEEWLKTLITVSEFQ 365
              Q+ + TI             +TLHEEWLKTLIT+SEF+
Sbjct: 1029 ASQMMKQTIKENFKSSEQRSEFSTLHEEWLKTLITISEFK 1068

[Close]

BLAST of CmoCh12G012740 vs. ExPASy TrEMBL
Match: A0A1S3C7K0 (DNA mismatch repair protein MSH7 OS=Cucumis melo OX=3656 GN=LOC103497727 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-17
Identity = 83/249 (33.33%), Postives = 101/249 (40.56%), Query Frame = 0


Query: 53  SMEKNRGSSLFSSIMHRFVRVDDKRKADER-----------------------------I 112
           ++EKNRGSSLFSSIMH+FVRVDDKRKA+ER                              
Sbjct: 76  AIEKNRGSSLFSSIMHKFVRVDDKRKANERDGVQEDSSQNEVGKDSPQLPSIYGKVNDPT 135

Query: 113 LKATMTLLDSKHQACDLLY-------------------PVRRDLNRFISRIGK------- 172
             + + +   +H   D+                     P    +   ISR+ +       
Sbjct: 136 EFSKLDVASRRHGKFDIANLNGHRGPVLNIESDEDIAGPETPGMRPSISRLKRSQEVSLV 195

Query: 173 ---------TTKIVKLLHYKMNLANILNEVSDATSK-------------------PLKSK 186
                    +TK +KLL   +NL  I NE+SDATSK                   PL  K
Sbjct: 196 NCSGDSLQDSTKRIKLLQDSINLKKIHNEISDATSKFEWLNPSQVRDANRRRPGHPLYDK 255

HSP 2 Score: 166.8 bits (421), Expect = 1.8e-37
Identity = 95/160 (59.38%), Postives = 104/160 (65.00%), Query Frame = 0


Query: 238  VESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHP 297
            VE  ETAS LQHATQDSLVI DELGRGT  F+GYAIAYAV  HLIEKVNCRLLFATHYHP
Sbjct: 907  VECSETASVLQHATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHP 966

Query: 298  LTKEFASHPHVMLQHMACTFKGQELVELLK----------------------QLQENHQR 357
            LTKEFASHPHVMLQHMACTFK  EL+ L +                      ++ E   R
Sbjct: 967  LTKEFASHPHVMLQHMACTFKDHELIFLYRLRSGACPESYGLKVATMAGIPGRVVEAASR 1026

Query: 358  ELQIERTTI-----------GVTTLHEEWLKTLITVSEFQ 365
              Q+ + TI             +TLHEEWLKTLITV EF+
Sbjct: 1027 ASQMMKQTIKENFKSSEQRSEFSTLHEEWLKTLITVLEFK 1066

[Close]

BLAST of CmoCh12G012740 vs. ExPASy TrEMBL
Match: A0A0A0LHY3 (DNA mismatch repair protein OS=Cucumis sativus OX=3659 GN=Csa_2G004730 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-17
Identity = 84/248 (33.87%), Postives = 102/248 (41.13%), Query Frame = 0


Query: 54  MEKNRGSSLFSSIMHRFVRVDDKRKADER--ILK-------------------------- 113
           +EKNRGSSLFSSIMH+FVRVDDKRKA+ER  + K                          
Sbjct: 77  IEKNRGSSLFSSIMHKFVRVDDKRKANERDEVQKDSSQNEVGKDSPQLPSISGKVNDPTE 136

Query: 114 -ATMTLLDSKHQAC-------------------DLLYPVRRDLNRFISRIGK-------- 173
            + + +   +H                      D+  P    +   +SR+ +        
Sbjct: 137 FSKLDVASRRHGKFDVANLNGHRGPVLNIESNEDIAGPETPGMRPSVSRLKRSQEVSLVN 196

Query: 174 --------TTKIVKLLHYKMNLANILNEVSDATSK-------------------PLKSK- 186
                   +TK +KLL   +NL  I NE+SDATSK                   PL  K 
Sbjct: 197 CSGDSLQDSTKRIKLLQDSINLNKIHNEISDATSKFEWLNPSQVRDANRRRPDHPLYDKK 256

HSP 2 Score: 166.4 bits (420), Expect = 2.3e-37
Identity = 95/160 (59.38%), Postives = 105/160 (65.62%), Query Frame = 0


Query: 238  VESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHP 297
            VE  ETAS LQHATQ +LVI DELGRGT  F+GYAIAYAV  HLIEKVNCRLLFATHYHP
Sbjct: 908  VECSETASVLQHATQHALVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHP 967

Query: 298  LTKEFASHPHVMLQHMACTFKGQELVELLK----------------------QLQENHQR 357
            LTKEFASHPHV+LQHMACTFK QELV L +                      ++ E   R
Sbjct: 968  LTKEFASHPHVVLQHMACTFKDQELVFLYRLNSGPCPESYGLQVAAMAGIPGRVVEAASR 1027

Query: 358  ELQIERTTI-----------GVTTLHEEWLKTLITVSEFQ 365
              Q+ + TI             +TLHEEWLKTLITVSEF+
Sbjct: 1028 ASQVLKKTIKENFRSSEQRSEFSTLHEEWLKTLITVSEFR 1067

[Close]

BLAST of CmoCh12G012740 vs. TAIR 10
Match: AT3G24495.1 (MUTS homolog 7 )

HSP 1 Score: 130.6 bits (327), Expect = 2.7e-30
Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 238 VESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHP 297
           VE  ETAS LQ+ATQDSLVI DELGRGT  F+GYAIAY+V  HL+EKV CR+LFATHYHP
Sbjct: 911 VECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYHP 970

Query: 298 LTKEFASHPHVMLQHMACTFKGQ 321
           LTKEFASHP V  +HMAC FK +
Sbjct: 971 LTKEFASHPRVTSKHMACAFKSR 993

HSP 2 Score: 71.6 bits (174), Expect = 1.5e-12
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 152 MGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQV 186
           +GKFYELYE DAE+GHKELDWKMT+SGVGKCRQV
Sbjct: 290 VGKFYELYELDAELGHKELDWKMTMSGVGKCRQV 323

[Close]

BLAST of CmoCh12G012740 vs. TAIR 10
Match: AT4G02070.1 (MUTS homolog 6 )

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-16
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 239  ESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHPL 298
            E  ETA  L  AT++SLV+ DELGRGT   +G AIA +V  H IEKV CR  F+THYH L
Sbjct: 1142 ELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRL 1201

Query: 299  TKEFASHPHVMLQHMAC 316
            + ++ ++P V L HMAC
Sbjct: 1202 SVDYQTNPKVSLCHMAC 1218

[Close]

BLAST of CmoCh12G012740 vs. TAIR 10
Match: AT4G02070.2 (MUTS homolog 6 )

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-16
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 239  ESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHYHPL 298
            E  ETA  L  AT++SLV+ DELGRGT   +G AIA +V  H IEKV CR  F+THYH L
Sbjct: 1139 ELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRL 1198

Query: 299  TKEFASHPHVMLQHMAC 316
            + ++ ++P V L HMAC
Sbjct: 1199 SVDYQTNPKVSLCHMAC 1215

[Close]

BLAST of CmoCh12G012740 vs. TAIR 10
Match: AT3G18524.1 (MUTS homolog 2 )

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-10
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 229 CALGGLINHV-ESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNC 288
           C L G+   + E  ETAS L+ A+  SL+I DELGRGT  ++G+ +A+A+  HL++    
Sbjct: 714 CQLRGVSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRA 773

Query: 289 RLLFATHYHPLT 300
             LFATH+H LT
Sbjct: 774 PTLFATHFHELT 785

[Close]

BLAST of CmoCh12G012740 vs. TAIR 10
Match: AT4G25540.1 (homolog of DNA mismatch repair protein MSH3 )

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-08
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 239 ESDETASALQHATQDSLVIPDELGRGTGAFNGYAIAYAVRPHLIEKVNCRLLFATHY 296
           E  E +  ++  +  SLVI DELGRGT   +G AIAYA   HL+ +  C +LF THY
Sbjct: 876 ELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHY 932

The following BLAST results are available for this feature:

BLAST of CmoCh12G012740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMV7	3.8e-29	74.70	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana OX=3702 GN=MSH7 PE=1 SV...	[more]
E1BYJ2	4.4e-17	53.01	DNA mismatch repair protein Msh6 OS=Gallus gallus OX=9031 GN=MSH6 PE=3 SV=2	[more]
P52701	1.3e-16	53.01	DNA mismatch repair protein Msh6 OS=Homo sapiens OX=9606 GN=MSH6 PE=1 SV=2	[more]
P54276	2.2e-16	53.01	DNA mismatch repair protein Msh6 OS=Mus musculus OX=10090 GN=Msh6 PE=1 SV=3	[more]
O04716	3.1e-15	54.55	DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana OX=3702 GN=MSH6 PE=1 SV...	[more]

BLAST of CmoCh12G012740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFZ1	4.7e-38	59.38	DNA mismatch repair protein MSH7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3CFZ1	2.7e-17	33.33	DNA mismatch repair protein MSH7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7V751	2.3e-16	33.33	DNA mismatch repair protein MSH7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3C7K0	2.7e-17	33.33	DNA mismatch repair protein MSH7 OS=Cucumis melo OX=3656 GN=LOC103497727 PE=4 SV...	[more]
A0A0A0LHY3	2.0e-17	33.87	DNA mismatch repair protein OS=Cucumis sativus OX=3659 GN=Csa_2G004730 PE=3 SV=1	[more]

Pages

BLAST of CmoCh12G012740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24495.1	2.7e-30	74.70	MUTS homolog 7	[more]
AT4G02070.1	2.2e-16	54.55	MUTS homolog 6	[more]
AT4G02070.2	2.2e-16	54.55	MUTS homolog 6	[more]
AT3G18524.1	1.1e-10	45.83	MUTS homolog 2	[more]
AT4G25540.1	6.5e-08	47.37	homolog of DNA mismatch repair protein MSH3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000432	DNA mismatch repair protein MutS, C-terminal	SMART	SM00534	mutATP5	coord: 194..350 e-value: 1.1E-8 score: -1.0
IPR000432	DNA mismatch repair protein MutS, C-terminal	PFAM	PF00488	MutS_V	coord: 238..333 e-value: 7.6E-25 score: 88.0
IPR000432	DNA mismatch repair protein MutS, C-terminal	PROSITE	PS00486	DNA_MISMATCH_REPAIR_2	coord: 254..270
IPR016151	DNA mismatch repair protein MutS, N-terminal	GENE3D	3.40.1170.10	DNA repair protein MutS, domain I	coord: 148..204 e-value: 7.6E-7 score: 31.1
IPR016151	DNA mismatch repair protein MutS, N-terminal	SUPERFAMILY	55271	DNA repair protein MutS, domain I	coord: 152..187
IPR007695	DNA mismatch repair protein MutS-like, N-terminal	PFAM	PF01624	MutS_I	coord: 152..178 e-value: 5.7E-5 score: 23.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 214..340 e-value: 3.2E-25 score: 90.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 238..336
IPR045076	DNA mismatch repair MutS family	PANTHER	PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	coord: 215..340 coord: 150..185
None	No IPR available	PANTHER	PTHR11361:SF138	DNA MISMATCH REPAIR PROTEIN MSH7	coord: 215..340 coord: 150..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G012740.1	CmoCh12G012740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006298	mismatch repair
biological_process	GO:0050794	regulation of cellular process
cellular_component	GO:0032300	mismatch repair complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030983	mismatched DNA binding