CmoCh12G012500 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTTTCCAAATTCAGACTTCCAAGGTCATTTCTTCTCTCACTTTCTTTTTCGTTTCTATACGTTCTAAGCTTAGATTGATGTGTTACGATGAATTTAATTGTCTCGACGATACTCGAGTATTCCCGTCACTTACCTAACAAATGGGCAGAGACTCGAACATGCTGTTATTGATTCTGAATATTCGTTTCGTGATTGTAGGACGACGATGAACATGAACTGGTCAGGAGGAGACTGGATGTGTGGTGTGTGTGAACATGTGAACTTCAAAAAGAGGGAAGCTTGTCAACGATGTGGGTACCCGAAATACGGTGGTCCAGACCCATCAACGTACGAGTTTAACAAAACAGAAGTGTTAGCAGGAGATTGGTATTGTCATTGTGGAGCTCACAACTATGCCAGTCGATCAAGTTGTTACAGATGTAATGCATATAAGAGTGCTGATATTTGTGCTTTGCCCGGTTGGAAATCTGGAGATTGGATCTGTAATAGGTAAGAGCTGGTTTTGTCTGATACCCATTTTTAGTTTTTTCATAATATTGATTGGACATACGTTGAACTTATGCAGAATAGGATGCGAAACACACAATTATGCTAGTAGGATGGAATGCTATAAATGCAAAACTCCGAGGAATTTCGGTAAGAAAAGATCAAACTTTTAAGCTTACCCACGTGGAGATTCCAACCCATTAACCTTTTGATCGAGATTATATGTCTTAACGACGTTTTTTTTTCTCATTTGGGCAGGTGGAGCGGTTTGAATTTTTGAAGAACTCTTAGTGGAGCTATTATTTGGCCAACATACAAGCTTCTAGCATCTGATTCCCTCCAATTTGCTTCTTTTTTTCCACTTTCTTTCATGAAAAAGCTAAAAAAATTCTGTTTCTTAATCTCAATTTAGAGCTAATTAATTAGAATTATCTCTACATCGTTCAACTATTGAGTTTGAAGGTCGTATTCATGGGCCACGAACCAAGAACTTTGAATTAGATTCAAGAATCTACTTCTAAATAAT AGTTTCCAAATTCAGACTTCCAAGGACGACGATGAACATGAACTGGTCAGGAGGAGACTGGATGTGTGGTGTGTGTGAACATGTGAACTTCAAAAAGAGGGAAGCTTGTCAACGATGTGGGTACCCGAAATACGGTGGTCCAGACCCATCAACGTACGAGTTTAACAAAACAGAAGTGTTAGCAGGAGATTGGTATTGTCATTGTGGAGCTCACAACTATGCCAGTCGATCAAGTTGTTACAGATGTAATGCATATAAGAGTGCTGATATTTGTGCTTTGCCCGGTTGGAAATCTGGAGATTGGATCTGTAATAGAATAGGATGCGAAACACACAATTATGCTAGTAGGATGGAATGCTATAAATGCAAAACTCCGAGGAATTTCGGTGGAGCGGTTTGAATTTTTGAAGAACTCTTAGTGGAGCTATTATTTGGCCAACATACAAGCTTCTAGCATCTGATTCCCTCCAATTTGCTTCTTTTTTTCCACTTTCTTTCATGAAAAAGCTAAAAAAATTCTGTTTCTTAATCTCAATTTAGAGCTAATTAATTAGAATTATCTCTACATCGTTCAACTATTGAGTTTGAAGGTCGTATTCATGGGCCACGAACCAAGAACTTTGAATTAGATTCAAGAATCTACTTCTAAATAAT ATGAACATGAACTGGTCAGGAGGAGACTGGATGTGTGGTGTGTGTGAACATGTGAACTTCAAAAAGAGGGAAGCTTGTCAACGATGTGGGTACCCGAAATACGGTGGTCCAGACCCATCAACGTACGAGTTTAACAAAACAGAAGTGTTAGCAGGAGATTGGTATTGTCATTGTGGAGCTCACAACTATGCCAGTCGATCAAGTTGTTACAGATGTAATGCATATAAGAGTGCTGATATTTGTGCTTTGCCCGGTTGGAAATCTGGAGATTGGATCTGTAATAGAATAGGATGCGAAACACACAATTATGCTAGTAGGATGGAATGCTATAAATGCAAAACTCCGAGGAATTTCGGTGGAGCGGTTTGA MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRNFGGAV Homology
BLAST of CmoCh12G012500 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07 Identity = 37/101 (36.63%), Postives = 46/101 (45.54%), Query Frame = 0
BLAST of CmoCh12G012500 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 6.6e-07 Identity = 36/101 (35.64%), Postives = 45/101 (44.55%), Query Frame = 0
BLAST of CmoCh12G012500 vs. ExPASy Swiss-Prot
Match: Q9R020 (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 6.6e-07 Identity = 36/101 (35.64%), Postives = 45/101 (44.55%), Query Frame = 0
BLAST of CmoCh12G012500 vs. ExPASy Swiss-Prot
Match: Q19QU3 (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRANB2 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 6.6e-07 Identity = 36/101 (35.64%), Postives = 45/101 (44.55%), Query Frame = 0
BLAST of CmoCh12G012500 vs. ExPASy Swiss-Prot
Match: Q5R580 (Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii OX=9601 GN=ZRANB2 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 6.6e-07 Identity = 36/101 (35.64%), Postives = 45/101 (44.55%), Query Frame = 0
BLAST of CmoCh12G012500 vs. ExPASy TrEMBL
Match: A0A6J1FCS1 (zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444219 PE=4 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 2.0e-75 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of CmoCh12G012500 vs. ExPASy TrEMBL
Match: A0A6J1HSH3 (zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111465727 PE=4 SV=1) HSP 1 Score: 283.5 bits (724), Expect = 4.2e-73 Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0
BLAST of CmoCh12G012500 vs. ExPASy TrEMBL
Match: A0A1S3C6B6 (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103497392 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 1.6e-64 Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = 0
BLAST of CmoCh12G012500 vs. ExPASy TrEMBL
Match: A0A6J1CPG4 (uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=3673 GN=LOC111013106 PE=4 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 1.5e-62 Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 0
BLAST of CmoCh12G012500 vs. ExPASy TrEMBL
Match: A0A0A0LIX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006080 PE=4 SV=1) HSP 1 Score: 245.0 bits (624), Expect = 1.7e-61 Identity = 106/128 (82.81%), Postives = 113/128 (88.28%), Query Frame = 0
BLAST of CmoCh12G012500 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 196.8 bits (499), Expect = 9.9e-51 Identity = 80/137 (58.39%), Postives = 100/137 (72.99%), Query Frame = 0
BLAST of CmoCh12G012500 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 132.1 bits (331), Expect = 3.0e-31 Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 0
BLAST of CmoCh12G012500 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 122.5 bits (306), Expect = 2.4e-28 Identity = 59/158 (37.34%), Postives = 79/158 (50.00%), Query Frame = 0
BLAST of CmoCh12G012500 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein ) HSP 1 Score: 59.3 bits (142), Expect = 2.5e-09 Identity = 35/106 (33.02%), Postives = 48/106 (45.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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