CmoCh12G012430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G012430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribonucloprotein
Location	Cmo_Chr12: 11042696 .. 11045016 (-)
RNA-Seq Expression	CmoCh12G012430
Synteny	CmoCh12G012430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCCTTTTCTTCAAAATCTGCTGTGTTAAAACCCTACCGTTCTTCTTCGATCTAAAATGGTACTGTGTCTCTGTTACGAGTTCATGTAGGAGATGGATTCGCTTAAAGGACTTGTATTGATTTTGTTTGCGTTTGTTTTCGTGGATTTTAATGGCTGTTGCGTTTTTTGCAGACAGGAGAAGCGGTGAATCCCAAAGCCTATCCTTTGGCTGATTCGCAGCTTACTATTACTATTCTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTAAAGAAGGGCGCGAATGAAGGTACCGTGATTTGTTTAGTGTTGGTGCCTTTTCATTTGAAGAGAGTTTTAGGTTTTTAAGAGGAATTGGATGAGGATTTTGCTCGGTGTTTTTTGTTTTCTTTGGCTGATGGCTTTCTTTTAATGGAGTTTCAGCTACTAAGACGCTGAATAGAGGGATTTCGGAGTTTGTAGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTCCCCTTGTTGGCGGAAGATAAGGTAAATCTATTCATTTTTTGAAGTTTTGCTTGAAAACCATGCTTTTCAGTTGTTATTTATGAGAACTATGATTATGGCAAATGGGAGAATGAATATATTGAAGGATTCACAGACCATGGTGTTTTCTGTTCAGAAAATATTTGGATTTAGCTTCTCTATAGACTTGACAGTTAGCAGCACTTCCTCTTTTTTGTTACTTATGGACAATCTCAATTCATTGTTCTCTGCAGCTTATTTACCATTTTAGCTTTTAATGTATTTTATATCTTTGTGCCATGGAATCCTGTTGCGGTTAATAGGGAAGAAATGTAGTGAGGTAGGATAAGAGCTTCCTTTCTTTTAGCATATAGAGGATTAGAAGTTGCAGATTCAAGGCACCGTTCTACATATTACTATTTTCCCGTTTGCTTTCACTATATTTTTTTTTAATTTTGCAAAGGAGATTTCACTATATTTTTTTGAATTTTGCCCATCTTTTTTTAATATGGGGAGAACTACGATCAGGGGAGGGGGGCTCATTTCCGGTAAAATAAGAACAACCCCCACATTCAAACCGCCCTTTTTCCCACAAGAACTTGTTGTTTGCATACCCTTTTTCCCACAGGAACTTGTTGTTTGCATACCCTTTCTCCCACAAGAACTTTGTTTGCATACCCTTTCTCCCACAAGAACTTTGTTTGCATACCCTTTCTCCCACAAGAACTTTGTTTGCATACCCTTTCTCCCACAAGAACTTTGTTTGCATACCCTTTCTCCCACAAGAACTTTGTTTGCATACCCTTTCTCCCACGATAACTTGTTTCAGTTGCATATTATAAGGAATTCGAACAACTGCTAGGACAACTGCTTTGCATACCCTTTTTCCCACAAGAACTTGTTTCAGTTGCATATTATAAGGAATTCGAACAACTGCACTGCTCGGACTGAAATGCAAAGTATGAAATTTATCTCGGACAACTGCTTTCTGAAATGCAAAGTATGAAATTTATCCTTTAATCATTCAGTGAAAGTATGAAATTTATCCTTTAATCACTCAGTGAGTCGGGATAGAACTGACCATGTTGCTGATGGTCATCAAGTTTATATTTCTTTTAAACGAACTTCAGGGTAACACGTGTGTCACATTCATAGTTTATATGCAGATGTTTGATCACACCTTATAAGAACCGAGTGTTTAGGATGATCTATTTTCCAGACTTTTAAGTAAAACAAAACAATGTGTCCGAAATAATTAGTGCTTATTGCTCAGTTTTACAATGATATTATTTTCAAATATGCAGAATGTGCCGTATGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGCGGAGTCACGAGACCTGTAATAGCGTGTTCTGTAACAACAAATGAAGGGAGCCAATTGAAATCCCAGATACAGCAACTGAAGGTAATTGCCACCACCTCTTTCTTTTGGTCTATCTTCGTTGTAAAGTGTCGATCCATTCTTGATTCGGTGTCTTTTCTTCTAAATGCAGGATGCCATTGAGAAGCTGTTGATCTGAAATGTTATATTCTATATGGCATTCGGTATGATGGGCTTCTTTGATCGTCATGGTCGCTGCTCTGGAGGCTTTGACTGAAGTTGTTGTGCAATTAGGGAAAAAGAATATCTTTGGTATTGACCTATATATTGAGAGTTTTTTTTTTTCTTTTTTCTAATTTTGTTTCCATTAAGAGTGGGACAAAACACTCATACAATTTTAATGCACGGTTTATTATGCTAATTTTACCACCTTTATCCTCGTGAGTTTACTGTTGAAGAT

mRNA sequence

AATTCCTTTTCTTCAAAATCTGCTGTGTTAAAACCCTACCGTTCTTCTTCGATCTAAAATGACAGGAGAAGCGGTGAATCCCAAAGCCTATCCTTTGGCTGATTCGCAGCTTACTATTACTATTCTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTAAAGAAGGGCGCGAATGAAGCTACTAAGACGCTGAATAGAGGGATTTCGGAGTTTGTAGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTCCCCTTGTTGGCGGAAGATAAGAATGTGCCGTATGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGCGGAGTCACGAGACCTGTAATAGCGTGTTCTGTAACAACAAATGAAGGGAGCCAATTGAAATCCCAGATACAGCAACTGAAGGATGCCATTGAGAAGCTGTTGATCTGAAATGTTATATTCTATATGGCATTCGGTATGATGGGCTTCTTTGATCGTCATGGTCGCTGCTCTGGAGGCTTTGACTGAAGTTGTTGTGCAATTAGGGAAAAAGAATATCTTTGGTATTGACCTATATATTGAGAGTTTTTTTTTTTCTTTTTTCTAATTTTGTTTCCATTAAGAGTGGGACAAAACACTCATACAATTTTAATGCACGGTTTATTATGCTAATTTTACCACCTTTATCCTCGTGAGTTTACTGTTGAAGAT

Coding sequence (CDS)

ATGACAGGAGAAGCGGTGAATCCCAAAGCCTATCCTTTGGCTGATTCGCAGCTTACTATTACTATTCTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTAAAGAAGGGCGCGAATGAAGCTACTAAGACGCTGAATAGAGGGATTTCGGAGTTTGTAGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTCCCCTTGTTGGCGGAAGATAAGAATGTGCCGTATGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGCGGAGTCACGAGACCTGTAATAGCGTGTTCTGTAACAACAAATGAAGGGAGCCAATTGAAATCCCAGATACAGCAACTGAAGGATGCCATTGAGAAGCTGTTGATCTGA

Protein sequence

MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI

Homology

[Close]

BLAST of CmoCh12G012430 vs. ExPASy Swiss-Prot
Match: Q5XH16 (NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.7e-53
Identity = 104/128 (81.25%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLAD+QLT T+LDLVQQ+ANYKQL+KGANEATKTLNRGI+EF+VMAAD 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQ 120

Query: 121 DAIEKLLI 129
            AIE+LL+
Sbjct: 121 QAIERLLV 128

[Close]

BLAST of CmoCh12G012430 vs. ExPASy Swiss-Prot
Match: Q6P8E9 (NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.7e-53
Identity = 104/128 (81.25%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLAD+QLT T+LDLVQQAANYKQL+KGANEATKTLNRGI+EF+VMAAD 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIAC+VT  EGSQLK QIQ L+
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of CmoCh12G012430 vs. ExPASy Swiss-Prot
Match: Q3B8S0 (NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-51
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLAD+ LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of CmoCh12G012430 vs. ExPASy Swiss-Prot
Match: P55769 (NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-51
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLAD+ LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of CmoCh12G012430 vs. ExPASy Swiss-Prot
Match: Q4R5C6 (NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-51
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLAD+ LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of CmoCh12G012430 vs. ExPASy TrEMBL
Match: A0A6J1CPF3 (Ribonucloprotein OS=Momordica charantia OX=3673 GN=LOC111012970 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of CmoCh12G012430 vs. ExPASy TrEMBL
Match: A0A6J1FDG8 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111444377 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of CmoCh12G012430 vs. ExPASy TrEMBL
Match: A0A6J1HQD3 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111465723 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.7e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLAD+QLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of CmoCh12G012430 vs. ExPASy TrEMBL
Match: A0A444WXD4 (Ribonucloprotein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g000462 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.7e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLAD+QLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of CmoCh12G012430 vs. ExPASy TrEMBL
Match: A0A0A0LF58 (Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_2G006160 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.7e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLAD+QLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of CmoCh12G012430 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-62
Identity = 121/128 (94.53%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLADSQL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of CmoCh12G012430 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 235.7 bits (600), Expect = 2.0e-62
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLADSQL+ITI+DLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of CmoCh12G012430 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 231.9 bits (590), Expect = 2.9e-61
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLADSQL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of CmoCh12G012430 vs. TAIR 10
Match: AT5G20160.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-57
Identity = 121/160 (75.62%), Postives = 123/160 (76.88%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANE------------------- 60
           MTGE VNPKAYPLADSQL+ITILDLVQQA NYKQLKKGANE                   
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEGIRLLLMCVCLSYLLSLMF 60

Query: 61  -------------ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQA 120
                        ATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQA
Sbjct: 61  VKLFLIYLNLFISATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 120

Query: 121 LGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 129
           LGRACGVTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Sbjct: 121 LGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 160

[Close]

BLAST of CmoCh12G012430 vs. TAIR 10
Match: AT4G12600.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-53
Identity = 119/183 (65.03%), Postives = 122/183 (66.67%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLADSQL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDK-------------------------------------------- 120
           EPLEILLHLPLLAEDK                                            
Sbjct: 61  EPLEILLHLPLLAEDKVFEFLLIVSLSYESQLVVSLALASFTGFTWVSSSYDKKIRLYWL 120

Query: 121 -----------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEK 129
                      NVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LKDAIEK
Sbjct: 121 LDSSFEIVIVDNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAIEK 180

The following BLAST results are available for this feature:

BLAST of CmoCh12G012430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XH16	3.7e-53	81.25	NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1	[more]
Q6P8E9	3.7e-53	81.25	NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1	[more]
Q3B8S0	1.6e-51	78.91	NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3	[more]
P55769	1.6e-51	78.91	NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3	[more]
Q4R5C6	1.6e-51	78.91	NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1	[more]

BLAST of CmoCh12G012430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPF3	1.2e-62	100.00	Ribonucloprotein OS=Momordica charantia OX=3673 GN=LOC111012970 PE=3 SV=1	[more]
A0A6J1FDG8	1.2e-62	100.00	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111444377 PE=3 SV=1	[more]
A0A6J1HQD3	2.7e-62	99.22	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111465723 PE=3 SV=1	[more]
A0A444WXD4	2.7e-62	99.22	Ribonucloprotein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g000462 PE=3 SV=1	[more]
A0A0A0LF58	2.7e-62	99.22	Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_2G006160 PE=3 SV=1	[more]

BLAST of CmoCh12G012430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20160.1	1.2e-62	94.53	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	2.0e-62	93.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	2.9e-61	92.97	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.2	1.2e-57	75.63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.2	1.3e-53	65.03	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 8..21 score: 61.43 coord: 38..48 score: 87.27 coord: 21..36 score: 65.0 coord: 82..94 score: 83.08
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 70..80 score: 59.09 coord: 80..94 score: 51.21 coord: 35..49 score: 47.88 coord: 54..67 score: 48.7
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..128 e-value: 2.8E-58 score: 197.1
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 6..126
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 23..111 e-value: 1.1E-26 score: 92.3
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 4..128
None	No IPR available	PANTHER	PTHR23105:SF158	NHP2-LIKE PROTEIN 1	coord: 4..128
IPR004037	Ribosomal protein L7Ae conserved site	PROSITE	PS01082	RIBOSOMAL_L7AE	coord: 73..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G012430.1	CmoCh12G012430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031428	box C/D RNP complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding