CmoCh12G011910 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G011910
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr12: 10731280 .. 10731888 (-)
RNA-Seq ExpressionCmoCh12G011910
SyntenyCmoCh12G011910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTACCGTGATCCTTCAGCCGCAGGATTGCCTTGGGAACGGGTTACGCCACCAAGGTTTGGTTCTGTCGTCTCCGCCTTTGAAATCGCGGCGGAATTCTAACCGTATTAGTTCTAGTTCTTCTTCTGCAAACCCTAATTTTAATCAGGATGATGCGACTTGTTCCGGTAGGCGGCGGAGTTCGGAAGTGGGAGTTAAGGCTAACCGTCGAGTGAATAGAGGTCGGAGTCGGGTGGTAGAGACGTCCACGGCGGCGAAGATTTCACCGAAGAATCTGGTTATGGGACAAGTCAAGATCTTGAAGCGTGGAGAGATGTTGTGTCCCGATGGAGGTGTTGGTGATGGTGGTAAGAGGATGTTGGAATCGAAGGTTGAGGATTTGGATTTGGTTTTGGGATCGACTGATCGGTTGGGTCCAGACCCTGATTTGATGCAGAAGCAGGTTGTATTTTCGGAATTGAAGGTTGCCGATGGGATCTATGCTGGATCGGGTGCGTTCTTTGCTTCGCCGCCTCCGAGTTCAGTGCCCTTGCCGTCCTTTTTAGGTAAGAACGGTACTGCAACTAACGATCTGCGGCGGTTGTTGCGACTTGATTTGGACTGA

mRNA sequence

ATGGCTACTACCGTGATCCTTCAGCCGCAGGATTGCCTTGGGAACGGGTTACGCCACCAAGGTTTGGTTCTGTCGTCTCCGCCTTTGAAATCGCGGCGGAATTCTAACCGTATTAGTTCTAGTTCTTCTTCTGCAAACCCTAATTTTAATCAGGATGATGCGACTTGTTCCGGTAGGCGGCGGAGTTCGGAAGTGGGAGTTAAGGCTAACCGTCGAGTGAATAGAGGTCGGAGTCGGGTGGTAGAGACGTCCACGGCGGCGAAGATTTCACCGAAGAATCTGGTTATGGGACAAGTCAAGATCTTGAAGCGTGGAGAGATGTTGTGTCCCGATGGAGGTGTTGGTGATGGTGGTAAGAGGATGTTGGAATCGAAGGTTGAGGATTTGGATTTGGTTTTGGGATCGACTGATCGGTTGGGTCCAGACCCTGATTTGATGCAGAAGCAGGTTGTATTTTCGGAATTGAAGGTTGCCGATGGGATCTATGCTGGATCGGGTGCGTTCTTTGCTTCGCCGCCTCCGAGTTCAGTGCCCTTGCCGTCCTTTTTAGGTAAGAACGGTACTGCAACTAACGATCTGCGGCGGTTGTTGCGACTTGATTTGGACTGA

Coding sequence (CDS)

ATGGCTACTACCGTGATCCTTCAGCCGCAGGATTGCCTTGGGAACGGGTTACGCCACCAAGGTTTGGTTCTGTCGTCTCCGCCTTTGAAATCGCGGCGGAATTCTAACCGTATTAGTTCTAGTTCTTCTTCTGCAAACCCTAATTTTAATCAGGATGATGCGACTTGTTCCGGTAGGCGGCGGAGTTCGGAAGTGGGAGTTAAGGCTAACCGTCGAGTGAATAGAGGTCGGAGTCGGGTGGTAGAGACGTCCACGGCGGCGAAGATTTCACCGAAGAATCTGGTTATGGGACAAGTCAAGATCTTGAAGCGTGGAGAGATGTTGTGTCCCGATGGAGGTGTTGGTGATGGTGGTAAGAGGATGTTGGAATCGAAGGTTGAGGATTTGGATTTGGTTTTGGGATCGACTGATCGGTTGGGTCCAGACCCTGATTTGATGCAGAAGCAGGTTGTATTTTCGGAATTGAAGGTTGCCGATGGGATCTATGCTGGATCGGGTGCGTTCTTTGCTTCGCCGCCTCCGAGTTCAGTGCCCTTGCCGTCCTTTTTAGGTAAGAACGGTACTGCAACTAACGATCTGCGGCGGTTGTTGCGACTTGATTTGGACTGA

Protein sequence

MATTVILQPQDCLGNGLRHQGLVLSSPPLKSRRNSNRISSSSSSANPNFNQDDATCSGRRRSSEVGVKANRRVNRGRSRVVETSTAAKISPKNLVMGQVKILKRGEMLCPDGGVGDGGKRMLESKVEDLDLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPSSVPLPSFLGKNGTATNDLRRLLRLDLD
Homology
BLAST of CmoCh12G011910 vs. ExPASy TrEMBL
Match: A0A6J1FBP4 (uncharacterized protein LOC111444161 OS=Cucurbita moschata OX=3662 GN=LOC111444161 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.3e-105
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0

Query: 1   MATTVILQPQDCLGNGLRHQGLVLSSPPLKSRRNSNRISSSSSSANPNFNQDDATCSGRR 60
           MATTVILQPQDCLGNGLRHQGLVLSSPPLKSRRNSNRISSSSSSANPNFNQDDATCSGRR
Sbjct: 1   MATTVILQPQDCLGNGLRHQGLVLSSPPLKSRRNSNRISSSSSSANPNFNQDDATCSGRR 60

Query: 61  RSSEVGVKANRRVNRGRSRVVETSTAAKISPKNLVMGQVKILKRGEMLCPDGGVGDGGKR 120
           RSSEVGVKANRRVNRGRSRVVETSTAAKISPKNLVMGQVKILKRGEMLCPDGGVGDGGKR
Sbjct: 61  RSSEVGVKANRRVNRGRSRVVETSTAAKISPKNLVMGQVKILKRGEMLCPDGGVGDGGKR 120

Query: 121 MLESKVEDLDLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPSSVPLP 180
           MLESKVEDLDLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPSSVPLP
Sbjct: 121 MLESKVEDLDLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPSSVPLP 180

Query: 181 SFLGKNGTATNDLRRLLRLDLD 203
           SFLGKNGTATNDLRRLLRLDLD
Sbjct: 181 SFLGKNGTATNDLRRLLRLDLD 202

BLAST of CmoCh12G011910 vs. ExPASy TrEMBL
Match: A0A6J1HQ64 (uncharacterized protein LOC111465671 OS=Cucurbita maxima OX=3661 GN=LOC111465671 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 6.9e-105
Identity = 201/202 (99.50%), Postives = 202/202 (100.00%), Query Frame = 0

Query: 1   MATTVILQPQDCLGNGLRHQGLVLSSPPLKSRRNSNRISSSSSSANPNFNQDDATCSGRR 60
           MATTVILQPQDCLGNGLRHQGLVLSSPPLKSRRNSNRISSSSSSANPNFNQDDATCSGRR
Sbjct: 1   MATTVILQPQDCLGNGLRHQGLVLSSPPLKSRRNSNRISSSSSSANPNFNQDDATCSGRR 60

Query: 61  RSSEVGVKANRRVNRGRSRVVETSTAAKISPKNLVMGQVKILKRGEMLCPDGGVGDGGKR 120
           RSSEVGVKANRRVNRGRSRV+ETSTAAKISPKNLVMGQVKILKRGEMLCPDGGVGDGGKR
Sbjct: 61  RSSEVGVKANRRVNRGRSRVIETSTAAKISPKNLVMGQVKILKRGEMLCPDGGVGDGGKR 120

Query: 121 MLESKVEDLDLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPSSVPLP 180
           MLESKVEDLDLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPSSVPLP
Sbjct: 121 MLESKVEDLDLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPSSVPLP 180

Query: 181 SFLGKNGTATNDLRRLLRLDLD 203
           SFLGKNGTATNDLRRLLRLDLD
Sbjct: 181 SFLGKNGTATNDLRRLLRLDLD 202

BLAST of CmoCh12G011910 vs. ExPASy TrEMBL
Match: A0A6J1CPP9 (uncharacterized protein LOC111013161 OS=Momordica charantia OX=3673 GN=LOC111013161 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.9e-71
Identity = 160/205 (78.05%), Postives = 169/205 (82.44%), Query Frame = 0

Query: 4   TVILQPQDCLGNGLRHQGLVLSSPPLKSRRNSNRISSSSSSANPNFNQDDATCSGRRRSS 63
           TVIL PQDCLGNGLR QGLVLS+ PLKSRRNS    + SSS NPNFN  D +   RRRS 
Sbjct: 3   TVILPPQDCLGNGLRRQGLVLSA-PLKSRRNSK--PNPSSSTNPNFNH-DVSSGRRRRSP 62

Query: 64  EVGVKANRRVNRGRSRVVETST----AAKISPKNLVMGQVKILKRGEMLCPDGGVG--DG 123
            VGVK+NR+ NRGRSR  E ST    AAK+SPK LVMGQVKILKRGEML PD GVG  D 
Sbjct: 63  AVGVKSNRQANRGRSRSGEPSTAPSAAAKVSPKALVMGQVKILKRGEMLTPDRGVGGVDC 122

Query: 124 GKRMLESKVEDLDLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPSSV 183
           GKR LE K +D+DL LGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPSSV
Sbjct: 123 GKRRLELKADDMDLGLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPSSV 182

Query: 184 PLPSFLGKNGTATNDLRRLLRLDLD 203
           PLPSFLG NGTAT+DLRRLLRLDLD
Sbjct: 183 PLPSFLGNNGTATSDLRRLLRLDLD 203

BLAST of CmoCh12G011910 vs. ExPASy TrEMBL
Match: A0A5A7VCB7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00850 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.7e-69
Identity = 153/207 (73.91%), Postives = 173/207 (83.57%), Query Frame = 0

Query: 4   TVILQPQDCLGNGLRHQGLVLSSPPLKSRRNSNRISSSSSSANPNFNQDDATCSG-RRRS 63
           TVIL PQDCLG GLRHQGLVLS+ PL SRRNSN  +S+S+S+NPNFN DD +CSG RRRS
Sbjct: 3   TVILPPQDCLGKGLRHQGLVLSA-PLNSRRNSNP-NSASTSSNPNFNHDDKSCSGRRRRS 62

Query: 64  SEVGVKANRRVNRGRSRVVETSTAAKISPKNLVMGQVKILKRGEMLCPDGGVGDG----- 123
           + VG+KANR+ NR RSRV E+ST AK++ K+LVMGQVKILKRGE+L P  GVG G     
Sbjct: 63  ASVGLKANRQANRERSRVRESSTTAKMTTKSLVMGQVKILKRGEILTPGRGVGGGGGGGD 122

Query: 124 --GKRMLESKVEDLDLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPS 183
             GKR LESKVE++DLVLGSTDRLGPDPDLMQKQVV +E K  DG+YAGSGAFFASPPPS
Sbjct: 123 SCGKRRLESKVEEVDLVLGSTDRLGPDPDLMQKQVVLTEFK--DGMYAGSGAFFASPPPS 182

Query: 184 SVPLPSFLGKNGTATNDLRRLLRLDLD 203
           SVPLPSF+ KNG AT DLRRLLRLDL+
Sbjct: 183 SVPLPSFVVKNGIATTDLRRLLRLDLE 205

BLAST of CmoCh12G011910 vs. ExPASy TrEMBL
Match: A0A1S3C5D8 (uncharacterized protein LOC103496651 OS=Cucumis melo OX=3656 GN=LOC103496651 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.7e-69
Identity = 153/207 (73.91%), Postives = 173/207 (83.57%), Query Frame = 0

Query: 4   TVILQPQDCLGNGLRHQGLVLSSPPLKSRRNSNRISSSSSSANPNFNQDDATCSG-RRRS 63
           TVIL PQDCLG GLRHQGLVLS+ PL SRRNSN  +S+S+S+NPNFN DD +CSG RRRS
Sbjct: 3   TVILPPQDCLGKGLRHQGLVLSA-PLNSRRNSNP-NSASTSSNPNFNHDDKSCSGRRRRS 62

Query: 64  SEVGVKANRRVNRGRSRVVETSTAAKISPKNLVMGQVKILKRGEMLCPDGGVGDG----- 123
           + VG+KANR+ NR RSRV E+ST AK++ K+LVMGQVKILKRGE+L P  GVG G     
Sbjct: 63  ASVGLKANRQANRERSRVRESSTTAKMTTKSLVMGQVKILKRGEILTPGRGVGGGGGGGD 122

Query: 124 --GKRMLESKVEDLDLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPS 183
             GKR LESKVE++DLVLGSTDRLGPDPDLMQKQVV +E K  DG+YAGSGAFFASPPPS
Sbjct: 123 SCGKRRLESKVEEVDLVLGSTDRLGPDPDLMQKQVVLTEFK--DGMYAGSGAFFASPPPS 182

Query: 184 SVPLPSFLGKNGTATNDLRRLLRLDLD 203
           SVPLPSF+ KNG AT DLRRLLRLDL+
Sbjct: 183 SVPLPSFVVKNGIATTDLRRLLRLDLE 205

BLAST of CmoCh12G011910 vs. TAIR 10
Match: AT4G32020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-12
Identity = 67/197 (34.01%), Postives = 88/197 (44.67%), Query Frame = 0

Query: 6   ILQPQDCLGNGLRHQGLVLSSPPLKSRRNSNRISSSSSSANPNFNQDDATCSGRRRSSEV 65
           +L PQDCL +   H      +P     R    +S++ +  +P  +Q         RSS  
Sbjct: 5   VLNPQDCLKDPFSHM-KQHRNPSACPNRQKKTVSNNRTRRSPPRSQSS-------RSSSP 64

Query: 66  GVKANRRVNRGR-SRVVETSTAAKISPKNLVMGQVKILKRGEMLCPDGGVGDGGKRMLES 125
            V       R   S  V   T  K     + + QV+ILKRGE +          K   + 
Sbjct: 65  PVAPPLPPPRAAVSAFVPKGTLKKSLSNTVAVSQVRILKRGEEI---------PKETSDL 124

Query: 126 KVEDLDLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPSSVPLPSFLG 185
            VE  D  LGST R+GPDP L+  Q+  S  K     +        SPPPS VPLP+F  
Sbjct: 125 VVEMSD--LGSTRRIGPDPGLIPGQIRLSGRKSKSAPFYAGPVTMTSPPPSDVPLPAFFT 180

Query: 186 KNGTATNDLRRLLRLDL 202
           K   ATNDL R+LRLD+
Sbjct: 185 KK--ATNDLIRILRLDI 180

BLAST of CmoCh12G011910 vs. TAIR 10
Match: AT4G02040.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-12
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 0

Query: 75  RGRSRVVETSTAAKISPKNLVMGQVKILKRGEMLC-----PDGGVGDGGKRMLESKVEDL 134
           R +S  V  S AA     NLVM QVKILKRGE L       +    D  +R +   ++D+
Sbjct: 39  RKQSPTVVKSPAAN---PNLVMEQVKILKRGETLSAFNKNKENISSDDTRRPVLKMIKDV 98

Query: 135 DLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFA-SPPPSSVPLPSFLG 185
           DL++ +T+R+GP+P+++ KQ+       A G+ + +GA  + SPPPS VP+P FLG
Sbjct: 99  DLIVSATNRIGPEPEILMKQI------GALGLQSFAGANCSLSPPPSCVPIPCFLG 145

BLAST of CmoCh12G011910 vs. TAIR 10
Match: AT3G21570.1 (unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 7.2e-06
Identity = 32/67 (47.76%), Postives = 37/67 (55.22%), Query Frame = 0

Query: 152 FSELKV--------ADGIYAGSGAFFASPPPSSVPLPSFLGK-----------NGTATND 200
           FS +KV        AD IYAGS  F  SP PSS+PLPSF  K           + +A+ D
Sbjct: 68  FSNIKVRKYSPEVSADDIYAGSSIFAVSPAPSSLPLPSFSKKKAKSQVVVVSIDDSASQD 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FBP45.3e-105100.00uncharacterized protein LOC111444161 OS=Cucurbita moschata OX=3662 GN=LOC1114441... [more]
A0A6J1HQ646.9e-10599.50uncharacterized protein LOC111465671 OS=Cucurbita maxima OX=3661 GN=LOC111465671... [more]
A0A6J1CPP92.9e-7178.05uncharacterized protein LOC111013161 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A5A7VCB72.7e-6973.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C5D82.7e-6973.91uncharacterized protein LOC103496651 OS=Cucumis melo OX=3656 GN=LOC103496651 PE=... [more]
Match NameE-valueIdentityDescription
AT4G32020.11.0e-1234.01unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G02040.14.0e-1240.52unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G21570.17.2e-0647.76unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..78
NoneNo IPR availablePANTHERPTHR33670SPLICING FACTOR, PROLINE- AND GLUTAMINE-RICH-LIKEcoord: 1..201
NoneNo IPR availablePANTHERPTHR33670:SF15OS02G0797600 PROTEINcoord: 1..201

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G011910.1CmoCh12G011910.1mRNA