CmoCh12G011910 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTACTACCGTGATCCTTCAGCCGCAGGATTGCCTTGGGAACGGGTTACGCCACCAAGGTTTGGTTCTGTCGTCTCCGCCTTTGAAATCGCGGCGGAATTCTAACCGTATTAGTTCTAGTTCTTCTTCTGCAAACCCTAATTTTAATCAGGATGATGCGACTTGTTCCGGTAGGCGGCGGAGTTCGGAAGTGGGAGTTAAGGCTAACCGTCGAGTGAATAGAGGTCGGAGTCGGGTGGTAGAGACGTCCACGGCGGCGAAGATTTCACCGAAGAATCTGGTTATGGGACAAGTCAAGATCTTGAAGCGTGGAGAGATGTTGTGTCCCGATGGAGGTGTTGGTGATGGTGGTAAGAGGATGTTGGAATCGAAGGTTGAGGATTTGGATTTGGTTTTGGGATCGACTGATCGGTTGGGTCCAGACCCTGATTTGATGCAGAAGCAGGTTGTATTTTCGGAATTGAAGGTTGCCGATGGGATCTATGCTGGATCGGGTGCGTTCTTTGCTTCGCCGCCTCCGAGTTCAGTGCCCTTGCCGTCCTTTTTAGGTAAGAACGGTACTGCAACTAACGATCTGCGGCGGTTGTTGCGACTTGATTTGGACTGA ATGGCTACTACCGTGATCCTTCAGCCGCAGGATTGCCTTGGGAACGGGTTACGCCACCAAGGTTTGGTTCTGTCGTCTCCGCCTTTGAAATCGCGGCGGAATTCTAACCGTATTAGTTCTAGTTCTTCTTCTGCAAACCCTAATTTTAATCAGGATGATGCGACTTGTTCCGGTAGGCGGCGGAGTTCGGAAGTGGGAGTTAAGGCTAACCGTCGAGTGAATAGAGGTCGGAGTCGGGTGGTAGAGACGTCCACGGCGGCGAAGATTTCACCGAAGAATCTGGTTATGGGACAAGTCAAGATCTTGAAGCGTGGAGAGATGTTGTGTCCCGATGGAGGTGTTGGTGATGGTGGTAAGAGGATGTTGGAATCGAAGGTTGAGGATTTGGATTTGGTTTTGGGATCGACTGATCGGTTGGGTCCAGACCCTGATTTGATGCAGAAGCAGGTTGTATTTTCGGAATTGAAGGTTGCCGATGGGATCTATGCTGGATCGGGTGCGTTCTTTGCTTCGCCGCCTCCGAGTTCAGTGCCCTTGCCGTCCTTTTTAGGTAAGAACGGTACTGCAACTAACGATCTGCGGCGGTTGTTGCGACTTGATTTGGACTGA ATGGCTACTACCGTGATCCTTCAGCCGCAGGATTGCCTTGGGAACGGGTTACGCCACCAAGGTTTGGTTCTGTCGTCTCCGCCTTTGAAATCGCGGCGGAATTCTAACCGTATTAGTTCTAGTTCTTCTTCTGCAAACCCTAATTTTAATCAGGATGATGCGACTTGTTCCGGTAGGCGGCGGAGTTCGGAAGTGGGAGTTAAGGCTAACCGTCGAGTGAATAGAGGTCGGAGTCGGGTGGTAGAGACGTCCACGGCGGCGAAGATTTCACCGAAGAATCTGGTTATGGGACAAGTCAAGATCTTGAAGCGTGGAGAGATGTTGTGTCCCGATGGAGGTGTTGGTGATGGTGGTAAGAGGATGTTGGAATCGAAGGTTGAGGATTTGGATTTGGTTTTGGGATCGACTGATCGGTTGGGTCCAGACCCTGATTTGATGCAGAAGCAGGTTGTATTTTCGGAATTGAAGGTTGCCGATGGGATCTATGCTGGATCGGGTGCGTTCTTTGCTTCGCCGCCTCCGAGTTCAGTGCCCTTGCCGTCCTTTTTAGGTAAGAACGGTACTGCAACTAACGATCTGCGGCGGTTGTTGCGACTTGATTTGGACTGA MATTVILQPQDCLGNGLRHQGLVLSSPPLKSRRNSNRISSSSSSANPNFNQDDATCSGRRRSSEVGVKANRRVNRGRSRVVETSTAAKISPKNLVMGQVKILKRGEMLCPDGGVGDGGKRMLESKVEDLDLVLGSTDRLGPDPDLMQKQVVFSELKVADGIYAGSGAFFASPPPSSVPLPSFLGKNGTATNDLRRLLRLDLD Homology
BLAST of CmoCh12G011910 vs. ExPASy TrEMBL
Match: A0A6J1FBP4 (uncharacterized protein LOC111444161 OS=Cucurbita moschata OX=3662 GN=LOC111444161 PE=4 SV=1) HSP 1 Score: 390.2 bits (1001), Expect = 5.3e-105 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
BLAST of CmoCh12G011910 vs. ExPASy TrEMBL
Match: A0A6J1HQ64 (uncharacterized protein LOC111465671 OS=Cucurbita maxima OX=3661 GN=LOC111465671 PE=4 SV=1) HSP 1 Score: 389.8 bits (1000), Expect = 6.9e-105 Identity = 201/202 (99.50%), Postives = 202/202 (100.00%), Query Frame = 0
BLAST of CmoCh12G011910 vs. ExPASy TrEMBL
Match: A0A6J1CPP9 (uncharacterized protein LOC111013161 OS=Momordica charantia OX=3673 GN=LOC111013161 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 2.9e-71 Identity = 160/205 (78.05%), Postives = 169/205 (82.44%), Query Frame = 0
BLAST of CmoCh12G011910 vs. ExPASy TrEMBL
Match: A0A5A7VCB7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00850 PE=4 SV=1) HSP 1 Score: 271.6 bits (693), Expect = 2.7e-69 Identity = 153/207 (73.91%), Postives = 173/207 (83.57%), Query Frame = 0
BLAST of CmoCh12G011910 vs. ExPASy TrEMBL
Match: A0A1S3C5D8 (uncharacterized protein LOC103496651 OS=Cucumis melo OX=3656 GN=LOC103496651 PE=4 SV=1) HSP 1 Score: 271.6 bits (693), Expect = 2.7e-69 Identity = 153/207 (73.91%), Postives = 173/207 (83.57%), Query Frame = 0
BLAST of CmoCh12G011910 vs. TAIR 10
Match: AT4G32020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 71.2 bits (173), Expect = 1.0e-12 Identity = 67/197 (34.01%), Postives = 88/197 (44.67%), Query Frame = 0
BLAST of CmoCh12G011910 vs. TAIR 10
Match: AT4G02040.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 69.3 bits (168), Expect = 4.0e-12 Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 0
BLAST of CmoCh12G011910 vs. TAIR 10
Match: AT3G21570.1 (unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 7.2e-06 Identity = 32/67 (47.76%), Postives = 37/67 (55.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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