CmoCh12G011470 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G011470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	PRA1 family protein
Location	Cmo_Chr12: 10413755 .. 10414602 (-)
RNA-Seq Expression	CmoCh12G011470
Synteny	CmoCh12G011470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAATAGTCTCTGCAAAAGAAGTAAACTGATTGAGAAACAGAACAGAACTCCATTTCCATCGCTCCATTCTTCAGATCCAACGCCCAATTTCTTCCCCAGAAAGCTAAAACCCATTTTTCCTTCCGCCCCAACAAATTCTCCCCCCGAAAAACCCTTAGATCCGTGCAAATTTCACTCTAAAACCCTCGATTTTCCTTCAATGTCACGGGTCAAATTCGCCGCCGTCTACGGCACCGTGCCCTCTCCGCCCGCCGCCACATTCCCCACCACTTCCGGCGAAGCTCCTCCATCTTTCCCCTCCAGTTCCTCCTTTCTCGAACACGCTAAAACTACCACGCAATCCCTAATCGCCAAACAGCGGCCATGGCGAGAGCTCCTCGATTTCTCCGCCTTCTCTCTCCCTTTAAGCTCCGATGACGCTATGGCGAGAATCCGCCAGAACGTGAACTACTTTCATGTCAATTACGCCATGGTGATGCTCGTCATCGTCTTCTTCAGCTTATTCTGGCACCCGACTTCGTTCTTCGTTATCTTGCTCGTCTTCGTTGCTTGGTTGTTCTTCTACTTCCTCCGCGATCAGCCTCTCGTTCTCTTCGACCAAACGTTCGATGATAAAGTTGTTTTGGGGGTTTTGAGCATTTTTACAATCATCGCTCTTGTTTCTACTGATGTCGGATCGAATGTTTTGGGAGCCCTAACAACAGGGACCGTCGTTGTTGCGTTGCACGCGGCGTTTCGGAGTACGGCGGATCAATTTCTCGATTTGGAGACTGCTACACAAGGGGGATTGCTGTCGGCTGCGGGAAATCAGCAACAACAACAACAACGAGGCTACACTCGGATTTGA

mRNA sequence

GGAATAGTCTCTGCAAAAGAAGTAAACTGATTGAGAAACAGAACAGAACTCCATTTCCATCGCTCCATTCTTCAGATCCAACGCCCAATTTCTTCCCCAGAAAGCTAAAACCCATTTTTCCTTCCGCCCCAACAAATTCTCCCCCCGAAAAACCCTTAGATCCGTGCAAATTTCACTCTAAAACCCTCGATTTTCCTTCAATGTCACGGGTCAAATTCGCCGCCGTCTACGGCACCGTGCCCTCTCCGCCCGCCGCCACATTCCCCACCACTTCCGGCGAAGCTCCTCCATCTTTCCCCTCCAGTTCCTCCTTTCTCGAACACGCTAAAACTACCACGCAATCCCTAATCGCCAAACAGCGGCCATGGCGAGAGCTCCTCGATTTCTCCGCCTTCTCTCTCCCTTTAAGCTCCGATGACGCTATGGCGAGAATCCGCCAGAACGTGAACTACTTTCATGTCAATTACGCCATGGTGATGCTCGTCATCGTCTTCTTCAGCTTATTCTGGCACCCGACTTCGTTCTTCGTTATCTTGCTCGTCTTCGTTGCTTGGTTGTTCTTCTACTTCCTCCGCGATCAGCCTCTCGTTCTCTTCGACCAAACGTTCGATGATAAAGTTGTTTTGGGGGTTTTGAGCATTTTTACAATCATCGCTCTTGTTTCTACTGATGTCGGATCGAATGTTTTGGGAGCCCTAACAACAGGGACCGTCGTTGTTGCGTTGCACGCGGCGTTTCGGAGTACGGCGGATCAATTTCTCGATTTGGAGACTGCTACACAAGGGGGATTGCTGTCGGCTGCGGGAAATCAGCAACAACAACAACAACGAGGCTACACTCGGATTTGA

Coding sequence (CDS)

ATGTCACGGGTCAAATTCGCCGCCGTCTACGGCACCGTGCCCTCTCCGCCCGCCGCCACATTCCCCACCACTTCCGGCGAAGCTCCTCCATCTTTCCCCTCCAGTTCCTCCTTTCTCGAACACGCTAAAACTACCACGCAATCCCTAATCGCCAAACAGCGGCCATGGCGAGAGCTCCTCGATTTCTCCGCCTTCTCTCTCCCTTTAAGCTCCGATGACGCTATGGCGAGAATCCGCCAGAACGTGAACTACTTTCATGTCAATTACGCCATGGTGATGCTCGTCATCGTCTTCTTCAGCTTATTCTGGCACCCGACTTCGTTCTTCGTTATCTTGCTCGTCTTCGTTGCTTGGTTGTTCTTCTACTTCCTCCGCGATCAGCCTCTCGTTCTCTTCGACCAAACGTTCGATGATAAAGTTGTTTTGGGGGTTTTGAGCATTTTTACAATCATCGCTCTTGTTTCTACTGATGTCGGATCGAATGTTTTGGGAGCCCTAACAACAGGGACCGTCGTTGTTGCGTTGCACGCGGCGTTTCGGAGTACGGCGGATCAATTTCTCGATTTGGAGACTGCTACACAAGGGGGATTGCTGTCGGCTGCGGGAAATCAGCAACAACAACAACAACGAGGCTACACTCGGATTTGA

Protein sequence

MSRVKFAAVYGTVPSPPAATFPTTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELLDFSAFSLPLSSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLFFYFLRDQPLVLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFRSTADQFLDLETATQGGLLSAAGNQQQQQQRGYTRI

Homology

[Close]

BLAST of CmoCh12G011470 vs. ExPASy Swiss-Prot
Match: Q9FRR1 (PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.5e-35
Identity = 90/196 (45.92%), Postives = 125/196 (63.78%), Query Frame = 0


Query: 16  PPAATFPTTSGEAPPSFPSSSSFL----EHAKTTTQSLIAKQRPWRELLDFSAFSLPLSS 75
           PP        G   PS  S+++ +      AK TTQS+I   RPWRE+LD SA SLP   
Sbjct: 6   PPYGYGGAGGGGVGPSSTSNTTIIGTLSARAKQTTQSMITTLRPWREILDLSALSLPRGY 65

Query: 76  DDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLFFYFLRD--QPL 135
           D+AMA ++ N++YF  NYA+ +L IVF  L +HP S    ++VF+ W+  YF RD    +
Sbjct: 66  DEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSI 125

Query: 136 VLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFRSTADQFLDL 195
           V+  +  DDK+VL +LS+ T++ALV TDVG NVL +L  G ++V  H AFR+T D FLD 
Sbjct: 126 VISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDE 185

Query: 196 ETATQGGLLSA-AGNQ 205
           E+A +GGL+SA +GN+
Sbjct: 186 ESARRGGLVSAGSGNR 201

[Close]

BLAST of CmoCh12G011470 vs. ExPASy Swiss-Prot
Match: Q9LIC6 (PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.1e-32
Identity = 80/184 (43.48%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 10  YGTVPSPPAATFPTTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELLDFSAFSLPL 69
           YG +P         TS  A P     S  L  AK   ++ +A +R WR + DF +  LP 
Sbjct: 4   YGAIP---------TSSHASPLVDVES--LSRAKHRIKAGLATRRAWRVMFDFHSMGLPH 63

Query: 70  SSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLFFYFLRDQPL 129
              DA  RI+ N+ YF +NYA+V+L+++FFSL WHPTS  V  ++ V W+F YFLRD+P+
Sbjct: 64  GVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPI 123

Query: 130 VLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFRSTADQFLDL 189
            LF    DD+ VL VLS+ T++ L+ T+   N++GAL TG V+V +H+  R T D FLD 
Sbjct: 124 KLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDE 176

Query: 190 ETAT 194
           E AT
Sbjct: 184 EAAT 176

[Close]

BLAST of CmoCh12G011470 vs. ExPASy Swiss-Prot
Match: Q9C889 (PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 77/193 (39.90%), Postives = 115/193 (59.59%), Query Frame = 0


Query: 10  YGTVPSPPAATFPTTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELLDFSAFSLPL 69
           YG +P+            + PS      ++  AK   +S +A +RPW+ + DF + +LP 
Sbjct: 4   YGAIPT-----------SSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPH 63

Query: 70  SSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLFFYFLRDQPL 129
              DA++RI+ N+ YF  NYA+ +L I+F SL +HPTS  V+ ++ V W+F YFLRD+PL
Sbjct: 64  GFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPL 123

Query: 130 VLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFRSTADQFLDL 189
           V+F    DD+ VL  LS+ T++ L+ T   SN+LG+L T  V+V +HAA R + + FLD 
Sbjct: 124 VVFGYQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDE 183

Query: 190 ETAT---QGGLLS 200
           E A      GL+S
Sbjct: 184 EAAAVTEASGLMS 185

[Close]

BLAST of CmoCh12G011470 vs. ExPASy Swiss-Prot
Match: Q9FLB6 (PRA1 family protein B3 OS=Arabidopsis thaliana OX=3702 GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.5e-27
Identity = 80/192 (41.67%), Postives = 111/192 (57.81%), Query Frame = 0


Query: 15  SPPAATFPTTSG-----EAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELLDFSAFSLPL 74
           +PP       SG     + P S P+  +FL    ++ +  ++++RPW EL+D SA S P 
Sbjct: 4   NPPTLPISDHSGGGSQSQQPVSTPAFRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPE 63

Query: 75  SSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLFFYFLR--DQ 134
           S  DA +RIR+N+ YF VNY  ++ +++  SL  HP S  V+L +F AW+F Y  R  DQ
Sbjct: 64  SLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQ 123

Query: 135 PLVLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFRSTADQFL 194
           PLV+  +TF D+  LGVL I TI+ +  T VGS +  AL  G  +V LH AFR   D FL
Sbjct: 124 PLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFL 183

Query: 195 DLETATQGGLLS 200
           D +     GLLS
Sbjct: 184 DDQEPANTGLLS 195

[Close]

BLAST of CmoCh12G011470 vs. ExPASy Swiss-Prot
Match: Q9LIC7 (PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-26
Identity = 73/171 (42.69%), Postives = 99/171 (57.89%), Query Frame = 0


Query: 23  TTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELLDFSAFSLPLSSDDAMARIRQNV 82
           TTS  A P+    S  +  AK   +  +A +R WR + D  +  LP    D  +RI+ N+
Sbjct: 8   TTSSHASPAVNHES--ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNL 67

Query: 83  NYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLFFYFLRDQPLVLFDQTFDDKVVL 142
            YF  NYA+V+L ++FFSL WHPTS  V   +   W+F YFLRD PL +F    DD+ VL
Sbjct: 68  AYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVL 127

Query: 143 GVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFRSTADQFLDLETAT 194
             LS+ TI+ L+ T+   N++ AL  G V+V +HA  R T D FLD E AT
Sbjct: 128 IGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAAT 176

[Close]

BLAST of CmoCh12G011470 vs. ExPASy TrEMBL
Match: A0A6J1FGH1 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111443972 PE=3 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.2e-108
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MSRVKFAAVYGTVPSPPAATFPTTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELL 60
           MSRVKFAAVYGTVPSPPAATFPTTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELL
Sbjct: 1   MSRVKFAAVYGTVPSPPAATFPTTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELL 60

Query: 61  DFSAFSLPLSSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLF 120
           DFSAFSLPLSSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLF
Sbjct: 61  DFSAFSLPLSSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLF 120

Query: 121 FYFLRDQPLVLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFR 180
           FYFLRDQPLVLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFR
Sbjct: 121 FYFLRDQPLVLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFR 180

Query: 181 STADQFLDLETATQGGLLSAAGNQQQQQQRGYTRI 216
           STADQFLDLETATQGGLLSAAGNQQQQQQRGYTRI
Sbjct: 181 STADQFLDLETATQGGLLSAAGNQQQQQQRGYTRI 215

[Close]

BLAST of CmoCh12G011470 vs. ExPASy TrEMBL
Match: A0A6J1HLM4 (PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111465660 PE=3 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.2e-102
Identity = 208/215 (96.74%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MSRVKFAAVYGTVPSPPAATFPTTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELL 60
           MSRVKFAA YGTVPSPP AT PTTSGEAPPSF SSSSFLEHAKTTTQSLIAKQRPWRELL
Sbjct: 1   MSRVKFAAAYGTVPSPPPATIPTTSGEAPPSFRSSSSFLEHAKTTTQSLIAKQRPWRELL 60

Query: 61  DFSAFSLPLSSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLF 120
           DFSAFSLPLSSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLF
Sbjct: 61  DFSAFSLPLSSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLF 120

Query: 121 FYFLRDQPLVLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFR 180
           FYFLRDQPLVLF+QTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFR
Sbjct: 121 FYFLRDQPLVLFNQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFR 180

Query: 181 STADQFLDLETATQGGLLSAAGNQQQQQQRGYTRI 216
           STADQFLD+ETATQGGLLSAAGN QQQQQRGYTRI
Sbjct: 181 STADQFLDVETATQGGLLSAAGN-QQQQQRGYTRI 214

[Close]

BLAST of CmoCh12G011470 vs. ExPASy TrEMBL
Match: A0A5A7VAZ9 (PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001570 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 4.2e-84
Identity = 176/215 (81.86%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 1   MSRVKFAAVYGTVPSPPAATFPTTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELL 60
           MS VKF++ YG VPSP AAT PTTS  APP FPSSSSFLE AKTTTQSLIA QRPWREL 
Sbjct: 1   MSSVKFSSGYGAVPSPAAATIPTTSSGAPPPFPSSSSFLERAKTTTQSLIATQRPWRELF 60

Query: 61  DFSAFSLPLSSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLF 120
           DFSAFSLP S DDAMARIRQNVNYF VNYA+VML+IVF SLFWHP S  V LL+FVAWLF
Sbjct: 61  DFSAFSLPFSYDDAMARIRQNVNYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVAWLF 120

Query: 121 FYFLRDQPLVLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFR 180
           FYF RDQPLVLF+QTFDDKVVLGVLSIFTIIALVSTDVGSNVLGAL TG  VV LHAAFR
Sbjct: 121 FYFFRDQPLVLFNQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALITGVAVVGLHAAFR 180

Query: 181 STADQFLDLETATQGGLLSAAGNQQQQQQRGYTRI 216
            TAD FLD ETA +GGLLS  GN  QQQQRGYTRI
Sbjct: 181 ITADHFLDEETAAEGGLLSVVGN--QQQQRGYTRI 213

[Close]

BLAST of CmoCh12G011470 vs. ExPASy TrEMBL
Match: A0A0A0LIB9 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G010300 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.1e-83
Identity = 175/215 (81.40%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 1   MSRVKFAAVYGTVPSPPAATFPTTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELL 60
           MS VKF++ YG VPS  AAT PTTS  APPSFPSSSSFLE AKTTTQSLIA QRPWREL 
Sbjct: 1   MSSVKFSSGYGAVPSQAAATIPTTSSGAPPSFPSSSSFLERAKTTTQSLIATQRPWRELF 60

Query: 61  DFSAFSLPLSSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLF 120
           DFSAFSLP S DDAMARIRQNVNYF VNYA+VML+IVF SLFWHP S  V LL+FVAWLF
Sbjct: 61  DFSAFSLPFSYDDAMARIRQNVNYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVAWLF 120

Query: 121 FYFLRDQPLVLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFR 180
           FYF RDQPLVLF+QTFDDKVVLGVLSIFTIIALVSTDVGSNVLGAL TG  VV LH+AFR
Sbjct: 121 FYFFRDQPLVLFNQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALITGVTVVGLHSAFR 180

Query: 181 STADQFLDLETATQGGLLSAAGNQQQQQQRGYTRI 216
            TAD FLD ETA +GGLLS  GN  QQQQRGYTRI
Sbjct: 181 ITADHFLDEETAAEGGLLSVVGN--QQQQRGYTRI 213

[Close]

BLAST of CmoCh12G011470 vs. ExPASy TrEMBL
Match: A0A1S3C2L3 (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103496149 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.7e-83
Identity = 175/215 (81.40%), Postives = 182/215 (84.65%), Query Frame = 0


Query: 1   MSRVKFAAVYGTVPSPPAATFPTTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELL 60
           MS VKF++ YG VPSP AAT PTTS  APP FPSSSSFLE AKTTTQSLIA  RPWREL 
Sbjct: 1   MSSVKFSSGYGAVPSPAAATIPTTSSGAPPPFPSSSSFLERAKTTTQSLIATLRPWRELF 60

Query: 61  DFSAFSLPLSSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLF 120
           DFSAFSLP S DDAMARIRQNVNYF VNYA+VML+IVF SLFWHP S  V LL+FVAWLF
Sbjct: 61  DFSAFSLPFSYDDAMARIRQNVNYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVAWLF 120

Query: 121 FYFLRDQPLVLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFR 180
           FYF RDQPLVLF+QTFDDKVVLGVLSIFTIIALVSTDVGSNVLGAL TG  VV LHAAFR
Sbjct: 121 FYFFRDQPLVLFNQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALITGVAVVGLHAAFR 180

Query: 181 STADQFLDLETATQGGLLSAAGNQQQQQQRGYTRI 216
            TAD FLD ETA +GGLLS  GN  QQQQRGYTRI
Sbjct: 181 ITADHFLDEETAAEGGLLSVVGN--QQQQRGYTRI 213

[Close]

BLAST of CmoCh12G011470 vs. TAIR 10
Match: AT1G08770.1 (prenylated RAB acceptor 1.E )

HSP 1 Score: 149.8 bits (377), Expect = 2.5e-36
Identity = 90/196 (45.92%), Postives = 125/196 (63.78%), Query Frame = 0


Query: 16  PPAATFPTTSGEAPPSFPSSSSFL----EHAKTTTQSLIAKQRPWRELLDFSAFSLPLSS 75
           PP        G   PS  S+++ +      AK TTQS+I   RPWRE+LD SA SLP   
Sbjct: 6   PPYGYGGAGGGGVGPSSTSNTTIIGTLSARAKQTTQSMITTLRPWREILDLSALSLPRGY 65

Query: 76  DDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLFFYFLRD--QPL 135
           D+AMA ++ N++YF  NYA+ +L IVF  L +HP S    ++VF+ W+  YF RD    +
Sbjct: 66  DEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSI 125

Query: 136 VLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFRSTADQFLDL 195
           V+  +  DDK+VL +LS+ T++ALV TDVG NVL +L  G ++V  H AFR+T D FLD 
Sbjct: 126 VISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDE 185

Query: 196 ETATQGGLLSA-AGNQ 205
           E+A +GGL+SA +GN+
Sbjct: 186 ESARRGGLVSAGSGNR 201

[Close]

BLAST of CmoCh12G011470 vs. TAIR 10
Match: AT3G13720.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 139.0 bits (349), Expect = 4.3e-33
Identity = 80/184 (43.48%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 10  YGTVPSPPAATFPTTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELLDFSAFSLPL 69
           YG +P         TS  A P     S  L  AK   ++ +A +R WR + DF +  LP 
Sbjct: 4   YGAIP---------TSSHASPLVDVES--LSRAKHRIKAGLATRRAWRVMFDFHSMGLPH 63

Query: 70  SSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLFFYFLRDQPL 129
              DA  RI+ N+ YF +NYA+V+L+++FFSL WHPTS  V  ++ V W+F YFLRD+P+
Sbjct: 64  GVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPI 123

Query: 130 VLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFRSTADQFLDL 189
            LF    DD+ VL VLS+ T++ L+ T+   N++GAL TG V+V +H+  R T D FLD 
Sbjct: 124 KLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDE 176

Query: 190 ETAT 194
           E AT
Sbjct: 184 EAAT 176

[Close]

BLAST of CmoCh12G011470 vs. TAIR 10
Match: AT1G55190.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 128.3 bits (321), Expect = 7.7e-30
Identity = 77/193 (39.90%), Postives = 115/193 (59.59%), Query Frame = 0


Query: 10  YGTVPSPPAATFPTTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELLDFSAFSLPL 69
           YG +P+            + PS      ++  AK   +S +A +RPW+ + DF + +LP 
Sbjct: 4   YGAIPT-----------SSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPH 63

Query: 70  SSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLFFYFLRDQPL 129
              DA++RI+ N+ YF  NYA+ +L I+F SL +HPTS  V+ ++ V W+F YFLRD+PL
Sbjct: 64  GFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPL 123

Query: 130 VLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFRSTADQFLDL 189
           V+F    DD+ VL  LS+ T++ L+ T   SN+LG+L T  V+V +HAA R + + FLD 
Sbjct: 124 VVFGYQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDE 183

Query: 190 ETAT---QGGLLS 200
           E A      GL+S
Sbjct: 184 EAAAVTEASGLMS 185

[Close]

BLAST of CmoCh12G011470 vs. TAIR 10
Match: AT5G05380.1 (prenylated RAB acceptor 1.B3 )

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-28
Identity = 80/192 (41.67%), Postives = 111/192 (57.81%), Query Frame = 0


Query: 15  SPPAATFPTTSG-----EAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELLDFSAFSLPL 74
           +PP       SG     + P S P+  +FL    ++ +  ++++RPW EL+D SA S P 
Sbjct: 4   NPPTLPISDHSGGGSQSQQPVSTPAFRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPE 63

Query: 75  SSDDAMARIRQNVNYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLFFYFLR--DQ 134
           S  DA +RIR+N+ YF VNY  ++ +++  SL  HP S  V+L +F AW+F Y  R  DQ
Sbjct: 64  SLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQ 123

Query: 135 PLVLFDQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFRSTADQFL 194
           PLV+  +TF D+  LGVL I TI+ +  T VGS +  AL  G  +V LH AFR   D FL
Sbjct: 124 PLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFL 183

Query: 195 DLETATQGGLLS 200
           D +     GLLS
Sbjct: 184 DDQEPANTGLLS 195

[Close]

BLAST of CmoCh12G011470 vs. TAIR 10
Match: AT3G13710.1 (prenylated RAB acceptor 1.F4 )

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-27
Identity = 73/171 (42.69%), Postives = 99/171 (57.89%), Query Frame = 0


Query: 23  TTSGEAPPSFPSSSSFLEHAKTTTQSLIAKQRPWRELLDFSAFSLPLSSDDAMARIRQNV 82
           TTS  A P+    S  +  AK   +  +A +R WR + D  +  LP    D  +RI+ N+
Sbjct: 8   TTSSHASPAVNHES--ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNL 67

Query: 83  NYFHVNYAMVMLVIVFFSLFWHPTSFFVILLVFVAWLFFYFLRDQPLVLFDQTFDDKVVL 142
            YF  NYA+V+L ++FFSL WHPTS  V   +   W+F YFLRD PL +F    DD+ VL
Sbjct: 68  AYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVL 127

Query: 143 GVLSIFTIIALVSTDVGSNVLGALTTGTVVVALHAAFRSTADQFLDLETAT 194
             LS+ TI+ L+ T+   N++ AL  G V+V +HA  R T D FLD E AT
Sbjct: 128 IGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAAT 176

The following BLAST results are available for this feature:

BLAST of CmoCh12G011470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FRR1	3.5e-35	45.92	PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1	[more]
Q9LIC6	6.1e-32	43.48	PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1	[more]
Q9C889	1.1e-28	39.90	PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1	[more]
Q9FLB6	3.5e-27	41.67	PRA1 family protein B3 OS=Arabidopsis thaliana OX=3702 GN=PRA1B3 PE=1 SV=1	[more]
Q9LIC7	1.7e-26	42.69	PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1	[more]

BLAST of CmoCh12G011470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGH1	3.2e-108	100.00	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111443972 PE=3 SV=1	[more]
A0A6J1HLM4	1.2e-102	96.74	PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111465660 PE=3 SV=1	[more]
A0A5A7VAZ9	4.2e-84	81.86	PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G...	[more]
A0A0A0LIB9	2.1e-83	81.40	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G010300 PE=3 SV=1	[more]
A0A1S3C2L3	2.7e-83	81.40	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103496149 PE=3 SV=1	[more]

BLAST of CmoCh12G011470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08770.1	2.5e-36	45.92	prenylated RAB acceptor 1.E	[more]
AT3G13720.1	4.3e-33	43.48	PRA1 (Prenylated rab acceptor) family protein	[more]
AT1G55190.1	7.7e-30	39.90	PRA1 (Prenylated rab acceptor) family protein	[more]
AT5G05380.1	2.5e-28	41.67	prenylated RAB acceptor 1.B3	[more]
AT3G13710.1	1.2e-27	42.69	prenylated RAB acceptor 1.F4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 50..188 e-value: 5.8E-44 score: 149.2
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 32..206
None	No IPR available	PANTHER	PTHR19317:SF13	PRA1 FAMILY PROTEIN	coord: 32..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G011470.1	CmoCh12G011470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane