CmoCh12G011430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G011430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Auxin-responsive protein
Location	Cmo_Chr12: 10391175 .. 10393368 (-)
RNA-Seq Expression	CmoCh12G011430
Synteny	CmoCh12G011430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATTTCTCCCCCTTTCCCACTTTCCCGTCCGATTCTCTGCACTTTCTGTTTGTTTCCCGAGAAAATTAAAAAACCCATCGGAAAATTAAGCGAAACCCATTTGAGAAAGAGAAGAAAAAATGGCGTTTGAGAAAGATCTCAACTTGGAAGCCACGGAGCTCCGACTTGGCCTGCCGGGAACCTCGCCGGACAATCAATCTCCTCCGATCAACTCCAACAAAAGAGCTTTGCCGTCCGACGACCAAAACCTGCCGGATTCCGCCCGAGAAAATAACTCCGATCCCACAAAATGCACCCCGGAAACTCCGCCTCCCACCAAGTAAGTATGGTTGGATGAAAAGAAAAGTCTCGGGAATAATTGTGAGTTTATAATTAAGAAATACTCTCTCAATTAGGGAACCAAAATGCAAATCCACCAGAGTGTGTATTCAAAGTGGACAATATCGTACCATTGTGGAGAGTCGTGTTTGTCTAACAAGCACTTTATGAAAAATTTGATAGAAAGACGTTTATATTTATCTCGTCCGGGAATAATCGTGGGTTTATAATTAAAGAATACTGTCTCCATTGGTACGAAGCATATTGGGAAGTCTAAAACAAATCCACCAGAGCTCAAAGTGGACAATATCATACTACTACCAAGAGTCATGTTCGTCTAAAAAAATTTAACAGAAAGACATTCTTTATTTGTCAGGGCACAGGTTGTGGGGTGGCCGCCGGTCAGATCGTTCAGAAAAAATTCTTTTCAAGTGAAGAAAAAAGATGAGGCGGCGGCGGCCGGAGGAATGTTCATAAAGGTGAGCATGGATGGAGCTCCGTTTCTAAGGAAGGTTGATCTCAAGATCTATGGAGGATATCCTGAGCTTCTTCAAGCTTTGGAGAACATGTTCAAATTCTCTCTTGGTAAATTTCTAATTTTATTTTTCTTTTTGATCTCTAGATCTTGAAATGGAAATTTATGAGTTGTTTTTTTGTTGTTGTAGGGAAGTTTTGTGAGAGAGAAGGGTATAACGAATCGGAATTCGTCCCGACTTATGAAGATAAAGATGGCGATTGGATGCTCGTCGGCGACGTTCCATGGGAGTAAGTTTCATATCTCTATCTATAATGAATTTTCGTGCAACTTTTTCGATTAAAACTCATGTTCTAGGATCAGGTTTAGGGTTCTAAAATTCGATAATCTAGAAAACATGGTCGATCCGATCAAACCCGAATTCACGAAACGAAATTTTTTAACATTATCAATTCGATCCAACTCAACCCGTTTGAGTTGGGTTATAAACTTATTTAAATTGGGTCGAAAAATGTCCTAACTCATACCCTTGAACCCAATAAGTAGAGCAGCCTTGAACCCATACCCTTGATTCCTGCCTTGAGCCTCAGCCCGTAGGACCAACGGTTGCTGTTTGGTCTGGATAAGCAGGCATGGACAGGCTCCTCGAGCGGATACGTGTTTGAAAATTTTACAACTAAAATAATTGAATTGGGTCGAAAATGTCCTAACTTGATCCAACCGAACCCATGAATTCATTATCTAATAAAAATTGTTTGTGTTCGAAAATTTTACGACTAAAATAATTGAATTGGGTCGAAAAAATGTCATAACCCGACCCGACCGAACCCAAAAACATCCCTAAATCTCGTTCTTTGCGGACTAATTAAAGATGGGTTTATATGTAATTTTGCAGGATGTTTATGAGCTCATGCAAGAAGCTTAGAATCATGAAGGGATCAGAGGCCAAAGGATTGGGGTGTGGAGCAGTGTGAAGAAGAAGAAGAAGGATAACTGCTCTGGTTTTTGGTCATCGGAAAAGCTGTGGAACTTCATCACAGCCGCCGTGGATTTGCCGGCGGAGATCCGCCGCCGGCCGCCTCTCCGATGATGTGATCAATTTCTCGTGTAAATTTTAATGAAAAATCAGATCTTGATATACTTAGAGAGAGGCTGATGAACAAGACCCGAAAATAATAAGGGAATTATTATTATTATTAAATTTTTTTTTTTGGTGATTATTCGTATTAAATTTTTTGGGGGAAATTATGTTAATTAATTACCCAAAGAATTTGTATATTTTATATGATATAATCATCAATTCCAAGAGAAGGGTTTTTTTTTTTTCCTTATAATAGAATATTTACATGTAATATTTTGCGGGTTTAAGCGATCGATCGGTCAAGTACGACATTTAAAA

mRNA sequence

TCCATTTCTCCCCCTTTCCCACTTTCCCGTCCGATTCTCTGCACTTTCTGTTTGTTTCCCGAGAAAATTAAAAAACCCATCGGAAAATTAAGCGAAACCCATTTGAGAAAGAGAAGAAAAAATGGCGTTTGAGAAAGATCTCAACTTGGAAGCCACGGAGCTCCGACTTGGCCTGCCGGGAACCTCGCCGGACAATCAATCTCCTCCGATCAACTCCAACAAAAGAGCTTTGCCGTCCGACGACCAAAACCTGCCGGATTCCGCCCGAGAAAATAACTCCGATCCCACAAAATGCACCCCGGAAACTCCGCCTCCCACCAAGGCACAGGTTGTGGGGTGGCCGCCGGTCAGATCGTTCAGAAAAAATTCTTTTCAAGTGAAGAAAAAAGATGAGGCGGCGGCGGCCGGAGGAATGTTCATAAAGGTGAGCATGGATGGAGCTCCGTTTCTAAGGAAGGTTGATCTCAAGATCTATGGAGGATATCCTGAGCTTCTTCAAGCTTTGGAGAACATGTTCAAATTCTCTCTTGGGAAGTTTTGTGAGAGAGAAGGGTATAACGAATCGGAATTCGTCCCGACTTATGAAGATAAAGATGGCGATTGGATGCTCGTCGGCGACGTTCCATGGGAGATGTTTATGAGCTCATGCAAGAAGCTTAGAATCATGAAGGGATCAGAGGCCAAAGGATTGGGGTGTGGAGCAGTGTGAAGAAGAAGAAGAAGGATAACTGCTCTGGTTTTTGGTCATCGGAAAAGCTGTGGAACTTCATCACAGCCGCCGTGGATTTGCCGGCGGAGATCCGCCGCCGGCCGCCTCTCCGATGATGTGATCAATTTCTCGTGTAAATTTTAATGAAAAATCAGATCTTGATATACTTAGAGAGAGGCTGATGAACAAGACCCGAAAATAATAAGGGAATTATTATTATTATTAAATTTTTTTTTTTGGTGATTATTCGTATTAAATTTTTTGGGGGAAATTATGTTAATTAATTACCCAAAGAATTTGTATATTTTATATGATATAATCATCAATTCCAAGAGAAGGGTTTTTTTTTTTTCCTTATAATAGAATATTTACATGTAATATTTTGCGGGTTTAAGCGATCGATCGGTCAAGTACGACATTTAAAA

Coding sequence (CDS)

ATGGCGTTTGAGAAAGATCTCAACTTGGAAGCCACGGAGCTCCGACTTGGCCTGCCGGGAACCTCGCCGGACAATCAATCTCCTCCGATCAACTCCAACAAAAGAGCTTTGCCGTCCGACGACCAAAACCTGCCGGATTCCGCCCGAGAAAATAACTCCGATCCCACAAAATGCACCCCGGAAACTCCGCCTCCCACCAAGGCACAGGTTGTGGGGTGGCCGCCGGTCAGATCGTTCAGAAAAAATTCTTTTCAAGTGAAGAAAAAAGATGAGGCGGCGGCGGCCGGAGGAATGTTCATAAAGGTGAGCATGGATGGAGCTCCGTTTCTAAGGAAGGTTGATCTCAAGATCTATGGAGGATATCCTGAGCTTCTTCAAGCTTTGGAGAACATGTTCAAATTCTCTCTTGGGAAGTTTTGTGAGAGAGAAGGGTATAACGAATCGGAATTCGTCCCGACTTATGAAGATAAAGATGGCGATTGGATGCTCGTCGGCGACGTTCCATGGGAGATGTTTATGAGCTCATGCAAGAAGCTTAGAATCATGAAGGGATCAGAGGCCAAAGGATTGGGGTGTGGAGCAGTGTGA

Protein sequence

MAFEKDLNLEATELRLGLPGTSPDNQSPPINSNKRALPSDDQNLPDSARENNSDPTKCTPETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLKIYGGYPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLRIMKGSEAKGLGCGAV

Homology

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BLAST of CmoCh12G011430 vs. ExPASy Swiss-Prot
Match: O24542 (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.6e-63
Identity = 122/193 (63.21%), Postives = 150/193 (77.72%), Query Frame = 0


Query: 2   AFEKDLNLEATELRLGLPGTSPDNQSPPINSNKRALP--SDDQNLPDSARENNSDPTKCT 61
           ++EK+LNL+ATELRLGLPG+    +     SNKR+ P  SD++++      N SD TK  
Sbjct: 7   SYEKELNLKATELRLGLPGSDEPEKRATARSNKRSSPEASDEESI-----SNGSDVTK-E 66

Query: 62  PETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLKIYG 121
               PP KAQVVGWPP+RS+RKN+ Q +KK+E +   GM++KVSM GAP+LRK+DLK+Y 
Sbjct: 67  DNVVPPAKAQVVGWPPIRSYRKNNVQ-QKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYK 126

Query: 122 GYPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKL 181
            YPELL+ALENMFK   G++ EREGYN SE+ PTYEDKDGDWMLVGDVPW MF+SSCK+L
Sbjct: 127 SYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRL 186

Query: 182 RIMKGSEAKGLGC 193
           RIMKGSEAKGLGC
Sbjct: 187 RIMKGSEAKGLGC 192

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BLAST of CmoCh12G011430 vs. ExPASy Swiss-Prot
Match: P32294 (Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-59
Identity = 117/197 (59.39%), Postives = 147/197 (74.62%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGT--SPDNQ---SPPINSNKRALPSDDQNLPDSARENNSDP 60
           + FE DLNL+ATELRLGLPGT    DN       + +NKR +    Q+    ++ ++   
Sbjct: 5   VVFESDLNLKATELRLGLPGTEEKEDNNLRTHAVLRNNKRQVRETSQDSVSISKASHHQQ 64

Query: 61  TKCTPETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDL 120
              T   PPP KA++VGWPP+RS+RKNS Q  + D      G+F+KVSMDGAP+LRKVDL
Sbjct: 65  HVETVSAPPP-KAKIVGWPPIRSYRKNSVQEGEGD------GIFVKVSMDGAPYLRKVDL 124

Query: 121 KIYGGYPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSS 180
           K+YGGYPELL+ALE MFK ++G++ EREGY  SE+ PTYEDKDGDWMLVGDVPW+MF++S
Sbjct: 125 KVYGGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTS 184

Query: 181 CKKLRIMKGSEAKGLGC 193
           CK+LRIMKGSEA+GLGC
Sbjct: 185 CKRLRIMKGSEARGLGC 194

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BLAST of CmoCh12G011430 vs. ExPASy Swiss-Prot
Match: Q38822 (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.1e-59
Identity = 115/193 (59.59%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 7   LNLEATELRLGLPGT-----SPDNQSPPINSNKRALPSD-DQNLPDSARENNSDPTKCTP 66
           +NL+ TELRLGLPGT     + +  S   N+NKR L +D ++ +  S+R+          
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKT--------- 64

Query: 67  ETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLKIYGG 126
           ET PP KAQ+VGWPPVRS+RKN+ Q KK +      G+++KVSMDGAP+LRK+DL  Y G
Sbjct: 65  ETSPPRKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKG 124

Query: 127 YPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLR 186
           Y ELL+ALE MFKFS+G++ ER+GY  S+FVPTYEDKDGDWML+GDVPWEMF+ +CK+LR
Sbjct: 125 YSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLR 184

Query: 187 IMKGSEAKGLGCG 194
           IMKGSEAKGLGCG
Sbjct: 185 IMKGSEAKGLGCG 188

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BLAST of CmoCh12G011430 vs. ExPASy Swiss-Prot
Match: P33077 (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2)

HSP 1 Score: 229.2 bits (583), Expect = 4.1e-59
Identity = 118/193 (61.14%), Postives = 144/193 (74.61%), Query Frame = 0


Query: 3   FEKDLNLEATELRLGLPGTSPDNQSPPINSNKRALPSDDQNLPDSARENNSDPTKCTPET 62
           +++ +NL+ATELRLGLPGT          SNKR LP         A E   + T  T ET
Sbjct: 7   YDELVNLKATELRLGLPGTEETVSCG--KSNKRVLP--------EATEKEIESTGKT-ET 66

Query: 63  PPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLKIYGGYP 122
             P KAQ+VGWPPVRS+RKN+ Q KK +  +   G ++KVSMDGAP+LRK+DL +Y  YP
Sbjct: 67  ASPPKAQIVGWPPVRSYRKNNVQTKKSE--SEGQGNYVKVSMDGAPYLRKIDLTMYKQYP 126

Query: 123 ELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLRIM 182
           EL+++LENMFKFS+G++ EREGY  S+FVPTYEDKDGDWMLVGDVPWEMF+SSCK+LRIM
Sbjct: 127 ELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIM 186

Query: 183 KGSEAKGLGCGAV 196
           KGSE KGLGCG +
Sbjct: 187 KGSEVKGLGCGGL 186

[Close]

BLAST of CmoCh12G011430 vs. ExPASy Swiss-Prot
Match: O24543 (Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-58
Identity = 115/201 (57.21%), Postives = 147/201 (73.13%), Query Frame = 0


Query: 2   AFEKDLNLEATELRLGLPGTSPDNQSPPI------NSNKRALPS-DDQNLPDSARENNSD 61
           ++E +LNL ATELRLGLPG+    +  P       +SNKR+ P  ++     +   ++SD
Sbjct: 3   SYETELNLRATELRLGLPGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDSSD 62

Query: 62  PTKCT---PETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLR 121
            T  +    ++  P K QVVGWPP+RSFRKNS Q +KK E     GM++KVSM GAP+LR
Sbjct: 63  STTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQ-QKKVEQGDGTGMYLKVSMAGAPYLR 122

Query: 122 KVDLKIYGGYPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEM 181
           K+DLK+Y  YPELL+AL+N+FK + G++ EREGYN SE+ PTYEDKDGDWMLVGDVPW M
Sbjct: 123 KIDLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNM 182

Query: 182 FMSSCKKLRIMKGSEAKGLGC 193
           F+SSCK+LRI+KGSEAKGLGC
Sbjct: 183 FVSSCKRLRIIKGSEAKGLGC 202

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BLAST of CmoCh12G011430 vs. ExPASy TrEMBL
Match: A0A6J1FBX8 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111444021 PE=3 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.2e-108
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDNQSPPINSNKRALPSDDQNLPDSARENNSDPTKCTP 60
           MAFEKDLNLEATELRLGLPGTSPDNQSPPINSNKRALPSDDQNLPDSARENNSDPTKCTP
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDNQSPPINSNKRALPSDDQNLPDSARENNSDPTKCTP 60

Query: 61  ETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLKIYGG 120
           ETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLKIYGG
Sbjct: 61  ETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLKIYGG 120

Query: 121 YPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLR 180
           YPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLR
Sbjct: 121 YPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLR 180

Query: 181 IMKGSEAKGLGCGAV 196
           IMKGSEAKGLGCGAV
Sbjct: 181 IMKGSEAKGLGCGAV 195

[Close]

BLAST of CmoCh12G011430 vs. ExPASy TrEMBL
Match: A0A6J1HSB8 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111465674 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.3e-103
Identity = 190/198 (95.96%), Postives = 191/198 (96.46%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDNQSPPINSNKRALPSDDQNLPDSARENNSDPTKCTP 60
           MAFEKDLNLEATELRLGLPGTSPDNQS PINSNKRALPSDDQNLPDSARENNSDPTKCTP
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDNQSSPINSNKRALPSDDQNLPDSARENNSDPTKCTP 60

Query: 61  ETPPPTKAQVVGWPPVRSFRKNSFQVKKKDE---AAAAGGMFIKVSMDGAPFLRKVDLKI 120
           + PPPTKAQVVGWPPVRSFRKNSFQVKKKDE    AAAGGMFIKVSMDGAPFLRKVDLKI
Sbjct: 61  DNPPPTKAQVVGWPPVRSFRKNSFQVKKKDETAAVAAAGGMFIKVSMDGAPFLRKVDLKI 120

Query: 121 YGGYPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCK 180
           YGGYPELLQALENMFKFSLGKFC REGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCK
Sbjct: 121 YGGYPELLQALENMFKFSLGKFCGREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCK 180

Query: 181 KLRIMKGSEAKGLGCGAV 196
           KLRIMKGSEAKGLGCGAV
Sbjct: 181 KLRIMKGSEAKGLGCGAV 198

[Close]

BLAST of CmoCh12G011430 vs. ExPASy TrEMBL
Match: A0A6J1G4Q6 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111450780 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.1e-91
Identity = 173/200 (86.50%), Postives = 179/200 (89.50%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDNQSPPIN---SNKRALPSDDQNLPDSARENNSDPTK 60
           MAF+KDLNLEATELRLGLPGTSPD+QS PIN   SNKRALPSDDQN P+S R++NSD TK
Sbjct: 1   MAFQKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDSNSDLTK 60

Query: 61  CTPETPPPTKAQVVGWPPVRSFRKNSFQVKKKDE--AAAAGGMFIKVSMDGAPFLRKVDL 120
              E PPPTKAQVVGWPPVRSFRKN FQ KKKDE  A AAGGMFIKVSMDGAPFLRKVDL
Sbjct: 61  SDQENPPPTKAQVVGWPPVRSFRKNCFQAKKKDEGAATAAGGMFIKVSMDGAPFLRKVDL 120

Query: 121 KIYGGYPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSS 180
           K Y GYPELLQALENMFKFSLGKFCEREGYN SEFVPTYEDKDGDWMLVGDVPWEMFM S
Sbjct: 121 KTYQGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMGS 180

Query: 181 CKKLRIMKGSEAKGLGCGAV 196
           CKKLRIMKGSEAKGL CG+V
Sbjct: 181 CKKLRIMKGSEAKGLSCGSV 200

[Close]

BLAST of CmoCh12G011430 vs. ExPASy TrEMBL
Match: A0A5A7V9G4 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001460 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.5e-90
Identity = 175/199 (87.94%), Postives = 181/199 (90.95%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDNQS-PPI---NSNKRALPSDDQNLPDSARENNSDPT 60
           MAFEKDLNLEATELRLGLPGTSPD+QS  PI   NSNKRALPSDDQN  +S RE NSDP+
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNPLESRREINSDPS 60

Query: 61  KCTPETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLK 120
           KCT E  PPTKAQVVGWPPVRSFRKN  Q KKK+EAAAA GMFIKVSMDGAPFLRKVDLK
Sbjct: 61  KCTQENTPPTKAQVVGWPPVRSFRKNCLQAKKKEEAAAA-GMFIKVSMDGAPFLRKVDLK 120

Query: 121 IYGGYPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSC 180
           IY GYP+LLQALENMFKFSLGKFCEREGYN SEFVPTYEDKDGDWMLVGDVPWEMFMSSC
Sbjct: 121 IYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSC 180

Query: 181 KKLRIMKGSEAKGLGCGAV 196
           KKLRIMKGSEAKGLGCG+V
Sbjct: 181 KKLRIMKGSEAKGLGCGSV 198

[Close]

BLAST of CmoCh12G011430 vs. ExPASy TrEMBL
Match: A0A1S3C3E2 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496036 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.5e-90
Identity = 175/199 (87.94%), Postives = 181/199 (90.95%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDNQS-PPI---NSNKRALPSDDQNLPDSARENNSDPT 60
           MAFEKDLNLEATELRLGLPGTSPD+QS  PI   NSNKRALPSDDQN  +S RE NSDP+
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNPLESRREINSDPS 60

Query: 61  KCTPETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLK 120
           KCT E  PPTKAQVVGWPPVRSFRKN  Q KKK+EAAAA GMFIKVSMDGAPFLRKVDLK
Sbjct: 61  KCTQENTPPTKAQVVGWPPVRSFRKNCLQAKKKEEAAAA-GMFIKVSMDGAPFLRKVDLK 120

Query: 121 IYGGYPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSC 180
           IY GYP+LLQALENMFKFSLGKFCEREGYN SEFVPTYEDKDGDWMLVGDVPWEMFMSSC
Sbjct: 121 IYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSC 180

Query: 181 KKLRIMKGSEAKGLGCGAV 196
           KKLRIMKGSEAKGLGCG+V
Sbjct: 181 KKLRIMKGSEAKGLGCGSV 198

[Close]

BLAST of CmoCh12G011430 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.9e-60
Identity = 115/193 (59.59%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 7   LNLEATELRLGLPGT-----SPDNQSPPINSNKRALPSD-DQNLPDSARENNSDPTKCTP 66
           +NL+ TELRLGLPGT     + +  S   N+NKR L +D ++ +  S+R+          
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKT--------- 64

Query: 67  ETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLKIYGG 126
           ET PP KAQ+VGWPPVRS+RKN+ Q KK +      G+++KVSMDGAP+LRK+DL  Y G
Sbjct: 65  ETSPPRKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKG 124

Query: 127 YPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLR 186
           Y ELL+ALE MFKFS+G++ ER+GY  S+FVPTYEDKDGDWML+GDVPWEMF+ +CK+LR
Sbjct: 125 YSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLR 184

Query: 187 IMKGSEAKGLGCG 194
           IMKGSEAKGLGCG
Sbjct: 185 IMKGSEAKGLGCG 188

[Close]

BLAST of CmoCh12G011430 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.9e-60
Identity = 118/193 (61.14%), Postives = 144/193 (74.61%), Query Frame = 0


Query: 3   FEKDLNLEATELRLGLPGTSPDNQSPPINSNKRALPSDDQNLPDSARENNSDPTKCTPET 62
           +++ +NL+ATELRLGLPGT          SNKR LP         A E   + T  T ET
Sbjct: 7   YDELVNLKATELRLGLPGTEETVSCG--KSNKRVLP--------EATEKEIESTGKT-ET 66

Query: 63  PPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLKIYGGYP 122
             P KAQ+VGWPPVRS+RKN+ Q KK +  +   G ++KVSMDGAP+LRK+DL +Y  YP
Sbjct: 67  ASPPKAQIVGWPPVRSYRKNNVQTKKSE--SEGQGNYVKVSMDGAPYLRKIDLTMYKQYP 126

Query: 123 ELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLRIM 182
           EL+++LENMFKFS+G++ EREGY  S+FVPTYEDKDGDWMLVGDVPWEMF+SSCK+LRIM
Sbjct: 127 ELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIM 186

Query: 183 KGSEAKGLGCGAV 196
           KGSE KGLGCG +
Sbjct: 187 KGSEVKGLGCGGL 186

[Close]

BLAST of CmoCh12G011430 vs. TAIR 10
Match: AT3G23030.1 (indole-3-acetic acid inducible 2 )

HSP 1 Score: 199.1 bits (505), Expect = 3.2e-51
Identity = 106/192 (55.21%), Postives = 131/192 (68.23%), Query Frame = 0


Query: 1   MAFEK--DLNLEATELRLGLPGTSPDNQSPPINSNKRALPSDDQNLPDSARENNSDPTKC 60
           MA+EK  +LNL+ TEL LGLPG +   +          + S+++ L +  R+        
Sbjct: 1   MAYEKVNELNLKDTELCLGLPGRTEKIKE---EQEVSCVKSNNKRLFEETRDEE------ 60

Query: 61  TPETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLKIY 120
             E+ PPTK Q+VGWPPVRS RKN+  V            ++KVSMDGAP+LRK+DLK Y
Sbjct: 61  --ESTPPTKTQIVGWPPVRSSRKNNNSVS-----------YVKVSMDGAPYLRKIDLKTY 120

Query: 121 GGYPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCKK 180
             YPELL+ALENMFK  +G++CEREGY  S FVPTYEDKDGDWMLVGDVPW+MF SSCK+
Sbjct: 121 KNYPELLKALENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKR 170

Query: 181 LRIMKGSEAKGL 191
           LRIMKGS+A  L
Sbjct: 181 LRIMKGSDAPAL 170

[Close]

BLAST of CmoCh12G011430 vs. TAIR 10
Match: AT4G14560.1 (indole-3-acetic acid inducible )

HSP 1 Score: 198.0 bits (502), Expect = 7.1e-51
Identity = 108/190 (56.84%), Postives = 130/190 (68.42%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDNQ---SPPINSNKRALPSDDQNLPDSARENNSDPTK 60
           M     LNL+ TELRLGLPG   + Q   S   ++NKR                N+D T+
Sbjct: 1   MEVTNGLNLKDTELRLGLPGAQEEQQLELSCVRSNNKR---------------KNNDSTE 60

Query: 61  CTPETPPPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPFLRKVDLKI 120
                PPP K Q+VGWPPVRS RKN+     K+ +      ++KVSMDGAP+LRK+DLK+
Sbjct: 61  --ESAPPPAKTQIVGWPPVRSNRKNN---NNKNVS------YVKVSMDGAPYLRKIDLKM 120

Query: 121 YGGYPELLQALENMFKFSLGKFCEREGYNESEFVPTYEDKDGDWMLVGDVPWEMFMSSCK 180
           Y  YPELL+ALENMFKF++G++ EREGY  S FVPTYEDKDGDWMLVGDVPW+MF SSC+
Sbjct: 121 YKNYPELLKALENMFKFTVGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQ 164

Query: 181 KLRIMKGSEA 188
           KLRIMKGSEA
Sbjct: 181 KLRIMKGSEA 164

[Close]

BLAST of CmoCh12G011430 vs. TAIR 10
Match: AT1G04250.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-41
Identity = 99/215 (46.05%), Postives = 124/215 (57.67%), Query Frame = 0


Query: 6   DLNLEATELRLGLPGTSPDNQSPPINSNKRA----------LPSDDQNLPDSAREN---- 65
           +LNL  TEL LGLPG    +   P+  NKR           L ++  N   S   +    
Sbjct: 6   ELNLRETELCLGLPG---GDTVAPVTGNKRGFSETVDLKLNLNNEPANKEGSTTHDVVTF 65

Query: 66  NSDPTKCTPETP--PPTKAQVVGWPPVRSFRKNSFQVKKKDEAAAAGGMFIKVSMDGAPF 125
           +S      P+ P  PP KAQVVGWPPVRS+RKN     +K         F+KVSMDGAP+
Sbjct: 66  DSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDGAPY 125

Query: 126 LRKVDLKIYGGYPELLQALENMF-KFSLGKFCEREG-------------YNESEFVPTYE 185
           LRK+DL++Y  Y EL  AL NMF  F++GK    EG              N  ++VP+YE
Sbjct: 126 LRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYE 185

Query: 186 DKDGDWMLVGDVPWEMFMSSCKKLRIMKGSEAKGL 191
           DKDGDWMLVGDVPW MF+ +CK+LR+MKGS+A GL
Sbjct: 186 DKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGL 217

The following BLAST results are available for this feature:

BLAST of CmoCh12G011430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24542	1.6e-63	63.21	Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S...	[more]
P32294	1.8e-59	59.39	Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 S...	[more]
Q38822	4.1e-59	59.59	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1	[more]
P33077	4.1e-59	61.14	Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2	[more]
O24543	2.0e-58	57.21	Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 S...	[more]

BLAST of CmoCh12G011430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBX8	2.2e-108	100.00	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111444021 PE=3 SV=1	[more]
A0A6J1HSB8	1.3e-103	95.96	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111465674 PE=3 SV=1	[more]
A0A6J1G4Q6	7.1e-91	86.50	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111450780 PE=3 SV=1	[more]
A0A5A7V9G4	3.5e-90	87.94	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3C3E2	3.5e-90	87.94	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496036 PE=3 SV=1	[more]

BLAST of CmoCh12G011430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04240.1	2.9e-60	59.59	AUX/IAA transcriptional regulator family protein	[more]
AT5G43700.1	2.9e-60	61.14	AUX/IAA transcriptional regulator family protein	[more]
AT3G23030.1	3.2e-51	55.21	indole-3-acetic acid inducible 2	[more]
AT4G14560.1	7.1e-51	56.84	indole-3-acetic acid inducible	[more]
AT1G04250.1	1.3e-41	46.05	AUX/IAA transcriptional regulator family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 46..191 e-value: 1.2E-57 score: 195.5
None	No IPR available	GENE3D	3.10.20.90		coord: 91..195 e-value: 1.4E-43 score: 149.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..72
None	No IPR available	PANTHER	PTHR31734:SF167	AUXIN-RESPONSIVE PROTEIN	coord: 1..192
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 95..183
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 1..192
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 97..184 score: 26.647228

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G011430.1	CmoCh12G011430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding